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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 321 |
| AciI | CCGC | 1 cut(s) | 435 |
| AcsI | RAATTY | 2 cut(s) | 6, 414 |
| AcuI | CTGAAG | 1 cut(s) | 348 |
| AfaI | GTAC | 3 cut(s) | 173, 216, 406 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 441 |
| AgsI | TTSAA | 3 cut(s) | 85, 298, 421 |
| AluBI | AGCT | 3 cut(s) | 46, 121, 238 |
| AluI | AGCT | 3 cut(s) | 46, 121, 238 |
| ApoI | RAATTY | 2 cut(s) | 6, 414 |
| AseI | ATTAAT | 1 cut(s) | 108 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 173, 293 |
| AspS9I | GGNCC | 1 cut(s) | 245 |
| AsuHPI | GGTGA | 1 cut(s) | 319 |
| AvaII | GGWCC | 1 cut(s) | 245 |
| BanI | GGYRCC | 1 cut(s) | 321 |
| BccI | CCATC | 3 cut(s) | 190, 255, 297 |
| BciVI | GTATCC | 1 cut(s) | 279 |
| BfaI | CTAG | 3 cut(s) | 47, 122, 143 |
| BfuI | GTATCC | 1 cut(s) | 279 |
| BmcAI | AGTACT | 1 cut(s) | 173 |
| Bme18I | GGWCC | 1 cut(s) | 245 |
| BmgT120I | GGNCC | 1 cut(s) | 245 |
| BmiI | GGNNCC | 1 cut(s) | 323 |
| BmsI | GCATC | 2 cut(s) | 388, 488 |
| BpuEI | CTTGAG | 2 cut(s) | 59, 185 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 441 |
| Bse1I | ACTGG | 1 cut(s) | 248 |
| BseGI | GGATG | 3 cut(s) | 182, 270, 308 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 441 |
| BseNI | ACTGG | 1 cut(s) | 248 |
| BshNI | GGYRCC | 1 cut(s) | 321 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 441 |
| Bsp1407I | TGTACA | 1 cut(s) | 214 |
| Bsp143I | GATC | 1 cut(s) | 29 |
| BspACI | CCGC | 1 cut(s) | 435 |
| BspHI | TCATGA | 1 cut(s) | 198 |
| BspLI | GGNNCC | 1 cut(s) | 323 |
| BspT107I | GGYRCC | 1 cut(s) | 321 |
| BsrGI | TGTACA | 1 cut(s) | 214 |
| BsrI | ACTGG | 1 cut(s) | 248 |
| BssMI | GATC | 1 cut(s) | 29 |
| Bst4CI | ACNGT | 2 cut(s) | 154, 214 |
| Bst6I | CTCTTC | 1 cut(s) | 354 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 10 |
| BstAUI | TGTACA | 1 cut(s) | 214 |
| BstC8I | GCNNGC | 1 cut(s) | 161 |
| BstF5I | GGATG | 3 cut(s) | 182, 270, 308 |
| BstKTI | GATC | 1 cut(s) | 32 |
| BstMBI | GATC | 1 cut(s) | 29 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 10, 407 |
| BsuI | GTATCC | 1 cut(s) | 279 |
| BtsCI | GGATG | 3 cut(s) | 182, 270, 308 |
| Cac8I | GCNNGC | 1 cut(s) | 161 |
| CciI | TCATGA | 1 cut(s) | 198 |
| Cfr13I | GGNCC | 1 cut(s) | 245 |
| CseI | GACGC | 1 cut(s) | 415 |
| Csp6I | GTAC | 3 cut(s) | 172, 215, 405 |
| CviAII | CATG | 2 cut(s) | 199, 452 |
| CviJI | RGCY | 3 cut(s) | 46, 121, 238 |
| CviKI_1 | RGCY | 3 cut(s) | 46, 121, 238 |
| CviQI | GTAC | 3 cut(s) | 172, 215, 405 |
| DpnI | GATC | 1 cut(s) | 31 |
| DpnII | GATC | 1 cut(s) | 29 |
| Eam1104I | CTCTTC | 1 cut(s) | 354 |
| EarI | CTCTTC | 1 cut(s) | 354 |
| Eco32I | GATATC | 1 cut(s) | 196 |
| Eco47I | GGWCC | 1 cut(s) | 245 |
| Eco57I | CTGAAG | 1 cut(s) | 348 |
| EcoRV | GATATC | 1 cut(s) | 196 |
| EcoT22I | ATGCAT | 1 cut(s) | 481 |
| FaeI | CATG | 2 cut(s) | 202, 455 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 222, 254 |
| FatI | CATG | 2 cut(s) | 198, 451 |
| FokI | GGATG | 3 cut(s) | 169, 277, 315 |
| FspBI | CTAG | 3 cut(s) | 47, 122, 143 |
| HgaI | GACGC | 1 cut(s) | 415 |
| Hin1II | CATG | 2 cut(s) | 202, 455 |
| HinfI | GANTC | 1 cut(s) | 202 |
| HphI | GGTGA | 1 cut(s) | 319 |
| Hpy188III | TCNNGA | 2 cut(s) | 38, 199 |
| HpyAV | CCTTC | 1 cut(s) | 323 |
| HpyCH4III | ACNGT | 2 cut(s) | 154, 214 |
| HpyCH4IV | ACGT | 1 cut(s) | 385 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 59, 336, 479, 503 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 10, 407 |
| HpySE526I | ACGT | 1 cut(s) | 385 |
| Hsp92II | CATG | 2 cut(s) | 202, 455 |
| Kzo9I | GATC | 1 cut(s) | 29 |
| LmnI | GCTCC | 1 cut(s) | 18 |
| LpnPI | CCDG | 6 cut(s) | 30, 261, 339, 387, 396, 427 |
| LweI | GCATC | 2 cut(s) | 388, 488 |
| MaeI | CTAG | 3 cut(s) | 47, 122, 143 |
| MaeII | ACGT | 1 cut(s) | 385 |
| MaeIII | GTNAC | 1 cut(s) | 347 |
| MalI | GATC | 1 cut(s) | 31 |
| MboI | GATC | 1 cut(s) | 29 |
| MboII | GAAGA | 2 cut(s) | 73, 371 |
| MluCI | AATT | 2 cut(s) | 6, 414 |
| MnlI | CCTC | 2 cut(s) | 355, 506 |
| Mph1103I | ATGCAT | 1 cut(s) | 481 |
| MroXI | GAANNNNTTC | 2 cut(s) | 173, 293 |
| MseI | TTAA | 1 cut(s) | 108 |
| MslI | CAYNNNNRTG | 1 cut(s) | 493 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 10, 407 |
| NdeII | GATC | 1 cut(s) | 29 |
| NlaIII | CATG | 2 cut(s) | 202, 455 |
| NlaIV | GGNNCC | 1 cut(s) | 323 |
| NsiI | ATGCAT | 1 cut(s) | 481 |
| PagI | TCATGA | 1 cut(s) | 198 |
| PdmI | GAANNNNTTC | 2 cut(s) | 173, 293 |
| PfeI | GAWTC | 1 cut(s) | 202 |
| PshBI | ATTAAT | 1 cut(s) | 108 |
| PspN4I | GGNNCC | 1 cut(s) | 323 |
| PspPI | GGNCC | 1 cut(s) | 245 |
| RsaI | GTAC | 3 cut(s) | 173, 216, 406 |
| RsaNI | GTAC | 3 cut(s) | 172, 215, 405 |
| RseI | CAYNNNNRTG | 1 cut(s) | 493 |
| SaqAI | TTAA | 1 cut(s) | 108 |
| Sau3AI | GATC | 1 cut(s) | 29 |
| Sau96I | GGNCC | 1 cut(s) | 245 |
| ScaI | AGTACT | 1 cut(s) | 173 |
| SetI | ASST | 9 cut(s) | 48, 56, 90, 123, 144, 240, 366, 388, 446 |
| SfaNI | GCATC | 2 cut(s) | 388, 488 |
| SinI | GGWCC | 1 cut(s) | 245 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 493 |
| SmlI | CTYRAG | 2 cut(s) | 38, 164 |
| SmoI | CTYRAG | 2 cut(s) | 38, 164 |
| Sse9I | AATT | 2 cut(s) | 6, 414 |
| SsiI | CCGC | 1 cut(s) | 435 |
| SspMI | CTAG | 3 cut(s) | 47, 122, 143 |
| TaaI | ACNGT | 2 cut(s) | 154, 214 |
| TaiI | ACGT | 1 cut(s) | 388 |
| TaqI | TCGA | 3 cut(s) | 192, 259, 357 |
| TasI | AATT | 2 cut(s) | 6, 414 |
| TatI | WGTACW | 2 cut(s) | 171, 214 |
| TfiI | GAWTC | 1 cut(s) | 202 |
| Tru1I | TTAA | 1 cut(s) | 108 |
| Tru9I | TTAA | 1 cut(s) | 108 |
| TspDTI | ATGAA | 3 cut(s) | 146, 194, 302 |
| VpaK11BI | GGWCC | 1 cut(s) | 245 |
| VspI | ATTAAT | 1 cut(s) | 108 |
| XapI | RAATTY | 2 cut(s) | 6, 414 |
| XmnI | GAANNNNTTC | 2 cut(s) | 173, 293 |
| XspI | CTAG | 3 cut(s) | 47, 122, 143 |
| ZrmI | AGTACT | 1 cut(s) | 173 |
| Zsp2I | ATGCAT | 1 cut(s) | 481 |