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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 165, 186 |
| AciI | CCGC | 1 cut(s) | 8 |
| AcuI | CTGAAG | 1 cut(s) | 234 |
| AfaI | GTAC | 1 cut(s) | 402 |
| AgsI | TTSAA | 4 cut(s) | 55, 108, 246, 263 |
| AjnI | CCWGG | 1 cut(s) | 391 |
| AluBI | AGCT | 3 cut(s) | 26, 449, 473 |
| AluI | AGCT | 3 cut(s) | 26, 449, 473 |
| AoxI | GGCC | 1 cut(s) | 311 |
| ApeKI | GCWGC | 1 cut(s) | 470 |
| AspS9I | GGNCC | 1 cut(s) | 311 |
| BbsI | GAAGAC | 1 cut(s) | 216 |
| BbvI | GCAGC | 1 cut(s) | 482 |
| BccI | CCATC | 1 cut(s) | 302 |
| BciT130I | CCWGG | 1 cut(s) | 393 |
| BglII | AGATCT | 1 cut(s) | 17 |
| BisI | GCNGC | 1 cut(s) | 471 |
| BlsI | GCNGC | 1 cut(s) | 472 |
| Bme1390I | CCNGG | 1 cut(s) | 393 |
| BmgT120I | GGNCC | 1 cut(s) | 311 |
| BmrFI | CCNGG | 1 cut(s) | 393 |
| BmsI | GCATC | 2 cut(s) | 361, 457 |
| BpiI | GAAGAC | 1 cut(s) | 216 |
| BsaJI | CCNNGG | 1 cut(s) | 391 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 314, 344 |
| Bse3DI | GCAATG | 2 cut(s) | 309, 352 |
| BseBI | CCWGG | 1 cut(s) | 393 |
| BseDI | CCNNGG | 1 cut(s) | 391 |
| BseGI | GGATG | 4 cut(s) | 130, 313, 331, 376 |
| BseMI | GCAATG | 2 cut(s) | 309, 352 |
| BseRI | GAGGAG | 1 cut(s) | 335 |
| BseXI | GCAGC | 1 cut(s) | 482 |
| BshFI | GGCC | 1 cut(s) | 313 |
| BsnI | GGCC | 1 cut(s) | 313 |
| Bsp143I | GATC | 1 cut(s) | 17 |
| BspACI | CCGC | 1 cut(s) | 8 |
| BspANI | GGCC | 1 cut(s) | 313 |
| BsrDI | GCAATG | 2 cut(s) | 309, 352 |
| BssECI | CCNNGG | 1 cut(s) | 391 |
| BssMI | GATC | 1 cut(s) | 17 |
| Bst2UI | CCWGG | 1 cut(s) | 393 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstF5I | GGATG | 4 cut(s) | 130, 313, 331, 376 |
| BstKTI | GATC | 1 cut(s) | 20 |
| BstMBI | GATC | 1 cut(s) | 17 |
| BstNI | CCWGG | 1 cut(s) | 393 |
| BstNSI | RCATGY | 1 cut(s) | 8 |
| BstSCI | CCNGG | 1 cut(s) | 391 |
| BstV1I | GCAGC | 1 cut(s) | 482 |
| BstV2I | GAAGAC | 1 cut(s) | 216 |
| BstX2I | RGATCY | 1 cut(s) | 17 |
| BstYI | RGATCY | 1 cut(s) | 17 |
| BsuRI | GGCC | 1 cut(s) | 313 |
| BtgZI | GCGATG | 1 cut(s) | 480 |
| BtsCI | GGATG | 4 cut(s) | 130, 313, 331, 376 |
| BtsIMutI | CAGTG | 2 cut(s) | 279, 345 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| Cfr13I | GGNCC | 1 cut(s) | 311 |
| Csp6I | GTAC | 1 cut(s) | 401 |
| CviAII | CATG | 4 cut(s) | 5, 102, 203, 455 |
| CviJI | RGCY | 6 cut(s) | 26, 313, 382, 396, 449, 473 |
| CviKI_1 | RGCY | 6 cut(s) | 26, 313, 382, 396, 449, 473 |
| CviQI | GTAC | 1 cut(s) | 401 |
| DpnI | GATC | 1 cut(s) | 19 |
| DpnII | GATC | 1 cut(s) | 17 |
| DraI | TTTAAA | 1 cut(s) | 444 |
| Eco57I | CTGAAG | 1 cut(s) | 234 |
| EcoRII | CCWGG | 1 cut(s) | 391 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| FaeI | CATG | 4 cut(s) | 8, 105, 206, 458 |
| FatI | CATG | 4 cut(s) | 4, 101, 202, 454 |
| Fnu4HI | GCNGC | 1 cut(s) | 471 |
| FokI | GGATG | 4 cut(s) | 137, 320, 338, 383 |
| Fsp4HI | GCNGC | 1 cut(s) | 471 |
| GluI | GCNGC | 1 cut(s) | 471 |
| HaeIII | GGCC | 1 cut(s) | 313 |
| Hin1II | CATG | 4 cut(s) | 8, 105, 206, 458 |
| HinfI | GANTC | 5 cut(s) | 151, 242, 263, 269, 405 |
| Hpy166II | GTNNAC | 1 cut(s) | 401 |
| Hpy188I | TCNGA | 2 cut(s) | 268, 481 |
| Hpy188III | TCNNGA | 1 cut(s) | 52 |
| Hpy8I | GTNNAC | 1 cut(s) | 401 |
| HpyCH4IV | ACGT | 1 cut(s) | 221 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 302, 345, 374, 470 |
| HpySE526I | ACGT | 1 cut(s) | 221 |
| Hsp92II | CATG | 4 cut(s) | 8, 105, 206, 458 |
| Kzo9I | GATC | 1 cut(s) | 17 |
| LpnPI | CCDG | 4 cut(s) | 237, 327, 378, 405 |
| Lsp1109I | GCAGC | 1 cut(s) | 482 |
| LweI | GCATC | 2 cut(s) | 361, 457 |
| MaeII | ACGT | 1 cut(s) | 221 |
| MalI | GATC | 1 cut(s) | 19 |
| MboI | GATC | 1 cut(s) | 17 |
| MboII | GAAGA | 2 cut(s) | 216, 251 |
| MflI | RGATCY | 1 cut(s) | 17 |
| MluCI | AATT | 1 cut(s) | 439 |
| MlyI | GAGTC | 1 cut(s) | 145 |
| MnlI | CCTC | 4 cut(s) | 189, 313, 316, 361 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 3 cut(s) | 147, 354, 443 |
| MslI | CAYNNNNRTG | 1 cut(s) | 340 |
| MspR9I | CCNGG | 1 cut(s) | 393 |
| MvaI | CCWGG | 1 cut(s) | 393 |
| NdeII | GATC | 1 cut(s) | 17 |
| NlaIII | CATG | 4 cut(s) | 8, 105, 206, 458 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 8 |
| PaeI | GCATGC | 1 cut(s) | 8 |
| PfeI | GAWTC | 4 cut(s) | 242, 263, 269, 405 |
| PkrI | GCNGC | 1 cut(s) | 472 |
| PleI | GAGTC | 1 cut(s) | 145 |
| PpsI | GAGTC | 1 cut(s) | 145 |
| PsiI | TTATAA | 2 cut(s) | 165, 186 |
| Psp6I | CCWGG | 1 cut(s) | 391 |
| PspGI | CCWGG | 1 cut(s) | 391 |
| PspPI | GGNCC | 1 cut(s) | 311 |
| PsuI | RGATCY | 1 cut(s) | 17 |
| RsaI | GTAC | 1 cut(s) | 402 |
| RsaNI | GTAC | 1 cut(s) | 401 |
| RseI | CAYNNNNRTG | 1 cut(s) | 340 |
| SaqAI | TTAA | 3 cut(s) | 147, 354, 443 |
| SatI | GCNGC | 1 cut(s) | 471 |
| Sau3AI | GATC | 1 cut(s) | 17 |
| Sau96I | GGNCC | 1 cut(s) | 311 |
| SchI | GAGTC | 1 cut(s) | 145 |
| ScrFI | CCNGG | 1 cut(s) | 393 |
| SetI | ASST | 6 cut(s) | 28, 200, 224, 256, 451, 475 |
| SfaNI | GCATC | 2 cut(s) | 361, 457 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 340 |
| SphI | GCATGC | 1 cut(s) | 8 |
| Sse9I | AATT | 1 cut(s) | 439 |
| SsiI | CCGC | 1 cut(s) | 8 |
| StyD4I | CCNGG | 1 cut(s) | 391 |
| TaiI | ACGT | 1 cut(s) | 224 |
| TaqI | TCGA | 1 cut(s) | 257 |
| TasI | AATT | 1 cut(s) | 439 |
| TfiI | GAWTC | 4 cut(s) | 242, 263, 269, 405 |
| Tru1I | TTAA | 3 cut(s) | 147, 354, 443 |
| Tru9I | TTAA | 3 cut(s) | 147, 354, 443 |
| TscAI | CASTG | 2 cut(s) | 279, 345 |
| TseI | GCWGC | 1 cut(s) | 470 |
| TspDTI | ATGAA | 2 cut(s) | 192, 324 |
| TspRI | CASTG | 2 cut(s) | 279, 345 |
| XceI | RCATGY | 1 cut(s) | 8 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |