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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 470 |
| AclWI | GGATC | 1 cut(s) | 818 |
| AcsI | RAATTY | 1 cut(s) | 57 |
| AfaI | GTAC | 2 cut(s) | 191, 656 |
| AgsI | TTSAA | 7 cut(s) | 28, 46, 63, 355, 548, 686, 710 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 492, 524 |
| AluBI | AGCT | 4 cut(s) | 92, 229, 397, 668 |
| AluI | AGCT | 4 cut(s) | 92, 229, 397, 668 |
| AlwI | GGATC | 1 cut(s) | 818 |
| AoxI | GGCC | 1 cut(s) | 317 |
| ApeKI | GCWGC | 4 cut(s) | 397, 513, 668, 733 |
| ApoI | RAATTY | 1 cut(s) | 57 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 745, 777 |
| AspS9I | GGNCC | 2 cut(s) | 317, 472 |
| AsuHPI | GGTGA | 1 cut(s) | 171 |
| AsuII | TTCGAA | 1 cut(s) | 197 |
| AvaII | GGWCC | 1 cut(s) | 472 |
| BbvI | GCAGC | 4 cut(s) | 384, 525, 655, 745 |
| BccI | CCATC | 3 cut(s) | 46, 80, 483 |
| BfaI | CTAG | 2 cut(s) | 93, 627 |
| BfmI | CTRYAG | 1 cut(s) | 813 |
| BglII | AGATCT | 1 cut(s) | 147 |
| BisI | GCNGC | 4 cut(s) | 398, 514, 669, 734 |
| BlsI | GCNGC | 4 cut(s) | 399, 515, 670, 735 |
| Bme18I | GGWCC | 1 cut(s) | 472 |
| BmgT120I | GGNCC | 2 cut(s) | 317, 472 |
| BmiI | GGNNCC | 1 cut(s) | 318 |
| Bpu14I | TTCGAA | 1 cut(s) | 197 |
| BpuEI | CTTGAG | 1 cut(s) | 455 |
| BsaBI | GATNNNNATC | 1 cut(s) | 380 |
| BsaJI | CCNNGG | 1 cut(s) | 827 |
| Bse8I | GATNNNNATC | 1 cut(s) | 380 |
| BseDI | CCNNGG | 1 cut(s) | 827 |
| BseGI | GGATG | 1 cut(s) | 540 |
| BseJI | GATNNNNATC | 1 cut(s) | 380 |
| BseRI | GAGGAG | 2 cut(s) | 152, 239 |
| BseXI | GCAGC | 4 cut(s) | 384, 525, 655, 745 |
| BshFI | GGCC | 1 cut(s) | 319 |
| BslFI | GGGAC | 1 cut(s) | 235 |
| BsmFI | GGGAC | 1 cut(s) | 235 |
| BsnI | GGCC | 1 cut(s) | 319 |
| Bsp119I | TTCGAA | 1 cut(s) | 197 |
| Bsp1407I | TGTACA | 1 cut(s) | 189 |
| Bsp143I | GATC | 2 cut(s) | 147, 823 |
| Bsp19I | CCATGG | 1 cut(s) | 827 |
| BspANI | GGCC | 1 cut(s) | 319 |
| BspLI | GGNNCC | 1 cut(s) | 318 |
| BspPI | GGATC | 1 cut(s) | 818 |
| BspT104I | TTCGAA | 1 cut(s) | 197 |
| BsrGI | TGTACA | 1 cut(s) | 189 |
| BssECI | CCNNGG | 1 cut(s) | 827 |
| BssMI | GATC | 2 cut(s) | 147, 823 |
| BssT1I | CCWWGG | 1 cut(s) | 827 |
| Bst4CI | ACNGT | 1 cut(s) | 194 |
| Bst6I | CTCTTC | 1 cut(s) | 743 |
| BstAUI | TGTACA | 1 cut(s) | 189 |
| BstBI | TTCGAA | 1 cut(s) | 197 |
| BstC8I | GCNNGC | 1 cut(s) | 431 |
| BstDSI | CCRYGG | 1 cut(s) | 827 |
| BstEII | GGTNACC | 1 cut(s) | 177 |
| BstF5I | GGATG | 1 cut(s) | 540 |
| BstKTI | GATC | 2 cut(s) | 150, 826 |
| BstMBI | GATC | 2 cut(s) | 147, 823 |
| BstNSI | RCATGY | 1 cut(s) | 433 |
| BstPI | GGTNACC | 1 cut(s) | 177 |
| BstSFI | CTRYAG | 1 cut(s) | 813 |
| BstV1I | GCAGC | 4 cut(s) | 384, 525, 655, 745 |
| BstX2I | RGATCY | 1 cut(s) | 147 |
| BstYI | RGATCY | 1 cut(s) | 147 |
| BsuRI | GGCC | 1 cut(s) | 319 |
| BtgI | CCRYGG | 1 cut(s) | 827 |
| BtsCI | GGATG | 1 cut(s) | 540 |
| Cac8I | GCNNGC | 1 cut(s) | 431 |
| Cfr13I | GGNCC | 2 cut(s) | 317, 472 |
| CseI | GACGC | 1 cut(s) | 62 |
| Csp6I | GTAC | 2 cut(s) | 190, 655 |
| CviAII | CATG | 4 cut(s) | 254, 263, 430, 828 |
| CviJI | RGCY | 8 cut(s) | 92, 229, 319, 340, 397, 516, 668, 736 |
| CviKI_1 | RGCY | 8 cut(s) | 92, 229, 319, 340, 397, 516, 668, 736 |
| CviQI | GTAC | 2 cut(s) | 190, 655 |
| DpnI | GATC | 2 cut(s) | 149, 825 |
| DpnII | GATC | 2 cut(s) | 147, 823 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 470 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 470 |
| Eam1104I | CTCTTC | 1 cut(s) | 743 |
| EarI | CTCTTC | 1 cut(s) | 743 |
| Eco130I | CCWWGG | 1 cut(s) | 827 |
| Eco32I | GATATC | 1 cut(s) | 382 |
| Eco47I | GGWCC | 1 cut(s) | 472 |
| Eco91I | GGTNACC | 1 cut(s) | 177 |
| EcoO65I | GGTNACC | 1 cut(s) | 177 |
| EcoRV | GATATC | 1 cut(s) | 382 |
| EcoT14I | CCWWGG | 1 cut(s) | 827 |
| EcoT22I | ATGCAT | 1 cut(s) | 431 |
| ErhI | CCWWGG | 1 cut(s) | 827 |
| FaeI | CATG | 4 cut(s) | 257, 266, 433, 831 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 8, 40, 134, 166, 313, 345 |
| FaqI | GGGAC | 1 cut(s) | 235 |
| FatI | CATG | 4 cut(s) | 253, 262, 429, 827 |
| FauNDI | CATATG | 1 cut(s) | 184 |
| Fnu4HI | GCNGC | 4 cut(s) | 398, 514, 669, 734 |
| FokI | GGATG | 1 cut(s) | 547 |
| Fsp4HI | GCNGC | 4 cut(s) | 398, 514, 669, 734 |
| FspBI | CTAG | 2 cut(s) | 93, 627 |
| GluI | GCNGC | 4 cut(s) | 398, 514, 669, 734 |
| HaeIII | GGCC | 1 cut(s) | 319 |
| HgaI | GACGC | 1 cut(s) | 62 |
| Hin1II | CATG | 4 cut(s) | 257, 266, 433, 831 |
| HincII | GTYRAC | 2 cut(s) | 368, 804 |
| HindII | GTYRAC | 2 cut(s) | 368, 804 |
| HinfI | GANTC | 1 cut(s) | 355 |
| HphI | GGTGA | 1 cut(s) | 171 |
| Hpy166II | GTNNAC | 3 cut(s) | 190, 368, 804 |
| Hpy188I | TCNGA | 2 cut(s) | 78, 747 |
| Hpy8I | GTNNAC | 3 cut(s) | 190, 368, 804 |
| Hpy99I | CGWCG | 1 cut(s) | 78 |
| HpyAV | CCTTC | 3 cut(s) | 536, 593, 722 |
| HpyCH4III | ACNGT | 1 cut(s) | 194 |
| HpyCH4V | TGCA | 2 cut(s) | 416, 429 |
| Hsp92II | CATG | 4 cut(s) | 257, 266, 433, 831 |
| Kzo9I | GATC | 2 cut(s) | 147, 823 |
| LmnI | GCTCC | 2 cut(s) | 89, 226 |
| LpnPI | CCDG | 1 cut(s) | 386 |
| Lsp1109I | GCAGC | 4 cut(s) | 384, 525, 655, 745 |
| MaeI | CTAG | 2 cut(s) | 93, 627 |
| MaeIII | GTNAC | 1 cut(s) | 177 |
| MalI | GATC | 2 cut(s) | 149, 825 |
| MboI | GATC | 2 cut(s) | 147, 823 |
| MboII | GAAGA | 3 cut(s) | 90, 722, 760 |
| MflI | RGATCY | 1 cut(s) | 147 |
| MluCI | AATT | 6 cut(s) | 57, 68, 483, 616, 633, 783 |
| MmeI | TCCRAC | 3 cut(s) | 56, 512, 725 |
| MnlI | CCTC | 9 cut(s) | 130, 153, 217, 293, 432, 459, 498, 605, 744 |
| Mph1103I | ATGCAT | 1 cut(s) | 431 |
| MseI | TTAA | 9 cut(s) | 131, 156, 173, 231, 240, 296, 566, 579, 660 |
| MslI | CAYNNNNRTG | 1 cut(s) | 795 |
| NcoI | CCATGG | 1 cut(s) | 827 |
| NdeI | CATATG | 1 cut(s) | 184 |
| NdeII | GATC | 2 cut(s) | 147, 823 |
| NlaIII | CATG | 4 cut(s) | 257, 266, 433, 831 |
| NlaIV | GGNNCC | 1 cut(s) | 318 |
| NmuCI | GTSAC | 1 cut(s) | 177 |
| NsiI | ATGCAT | 1 cut(s) | 431 |
| NspI | RCATGY | 1 cut(s) | 433 |
| NspV | TTCGAA | 1 cut(s) | 197 |
| PaeI | GCATGC | 1 cut(s) | 433 |
| PfeI | GAWTC | 1 cut(s) | 355 |
| PkrI | GCNGC | 4 cut(s) | 399, 515, 670, 735 |
| PspEI | GGTNACC | 1 cut(s) | 177 |
| PspN4I | GGNNCC | 1 cut(s) | 318 |
| PspPI | GGNCC | 2 cut(s) | 317, 472 |
| PsuI | RGATCY | 1 cut(s) | 147 |
| RsaI | GTAC | 2 cut(s) | 191, 656 |
| RsaNI | GTAC | 2 cut(s) | 190, 655 |
| RseI | CAYNNNNRTG | 1 cut(s) | 795 |
| SaqAI | TTAA | 9 cut(s) | 131, 156, 173, 231, 240, 296, 566, 579, 660 |
| SatI | GCNGC | 4 cut(s) | 398, 514, 669, 734 |
| Sau3AI | GATC | 2 cut(s) | 147, 823 |
| Sau96I | GGNCC | 2 cut(s) | 317, 472 |
| SfcI | CTRYAG | 1 cut(s) | 813 |
| SfuI | TTCGAA | 1 cut(s) | 197 |
| SinI | GGWCC | 1 cut(s) | 472 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 795 |
| SmlI | CTYRAG | 1 cut(s) | 434 |
| SmoI | CTYRAG | 1 cut(s) | 434 |
| SphI | GCATGC | 1 cut(s) | 433 |
| Sse9I | AATT | 6 cut(s) | 57, 68, 483, 616, 633, 783 |
| SspI | AATATT | 1 cut(s) | 202 |
| SspMI | CTAG | 2 cut(s) | 93, 627 |
| StyI | CCWWGG | 1 cut(s) | 827 |
| TaaI | ACNGT | 1 cut(s) | 194 |
| TaqI | TCGA | 2 cut(s) | 197, 597 |
| TasI | AATT | 6 cut(s) | 57, 68, 483, 616, 633, 783 |
| TatI | WGTACW | 1 cut(s) | 189 |
| TfiI | GAWTC | 1 cut(s) | 355 |
| Tru1I | TTAA | 9 cut(s) | 131, 156, 173, 231, 240, 296, 566, 579, 660 |
| Tru9I | TTAA | 9 cut(s) | 131, 156, 173, 231, 240, 296, 566, 579, 660 |
| TseFI | GTSAC | 1 cut(s) | 177 |
| TseI | GCWGC | 4 cut(s) | 397, 513, 668, 733 |
| Tsp45I | GTSAC | 1 cut(s) | 177 |
| TspDTI | ATGAA | 2 cut(s) | 17, 729 |
| VpaK11BI | GGWCC | 1 cut(s) | 472 |
| XapI | RAATTY | 1 cut(s) | 57 |
| XceI | RCATGY | 1 cut(s) | 433 |
| XspI | CTAG | 2 cut(s) | 93, 627 |
| Zsp2I | ATGCAT | 1 cut(s) | 431 |