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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 287 |
| AcsI | RAATTY | 3 cut(s) | 28, 68, 330 |
| AfaI | GTAC | 2 cut(s) | 522, 539 |
| AgsI | TTSAA | 7 cut(s) | 28, 132, 247, 298, 329, 437, 548 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 492, 524 |
| AluBI | AGCT | 2 cut(s) | 293, 503 |
| AluI | AGCT | 2 cut(s) | 293, 503 |
| Alw26I | GTCTC | 2 cut(s) | 220, 413 |
| AoxI | GGCC | 1 cut(s) | 514 |
| ApeKI | GCWGC | 1 cut(s) | 113 |
| ApoI | RAATTY | 3 cut(s) | 28, 68, 330 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 333 |
| AspS9I | GGNCC | 1 cut(s) | 317 |
| AsuHPI | GGTGA | 2 cut(s) | 467, 479 |
| AvaII | GGWCC | 1 cut(s) | 317 |
| BbvI | GCAGC | 1 cut(s) | 125 |
| BccI | CCATC | 3 cut(s) | 80, 179, 363 |
| BcoDI | GTCTC | 2 cut(s) | 220, 413 |
| BisI | GCNGC | 1 cut(s) | 114 |
| BlsI | GCNGC | 1 cut(s) | 115 |
| Bme18I | GGWCC | 1 cut(s) | 317 |
| BmgT120I | GGNCC | 1 cut(s) | 317 |
| BmiI | GGNNCC | 1 cut(s) | 91 |
| BmsI | GCATC | 1 cut(s) | 100 |
| BsaAI | YACGTR | 1 cut(s) | 124 |
| BseGI | GGATG | 3 cut(s) | 73, 190, 540 |
| BseXI | GCAGC | 1 cut(s) | 125 |
| BshFI | GGCC | 1 cut(s) | 516 |
| BsiSI | CCGG | 1 cut(s) | 182 |
| BsmAI | GTCTC | 2 cut(s) | 220, 413 |
| BsnI | GGCC | 1 cut(s) | 516 |
| Bsp1407I | TGTACA | 1 cut(s) | 520 |
| Bsp143I | GATC | 1 cut(s) | 234 |
| BspACI | CCGC | 1 cut(s) | 287 |
| BspANI | GGCC | 1 cut(s) | 516 |
| BspLI | GGNNCC | 1 cut(s) | 91 |
| BsrGI | TGTACA | 1 cut(s) | 520 |
| BssMI | GATC | 1 cut(s) | 234 |
| BstAUI | TGTACA | 1 cut(s) | 520 |
| BstBAI | YACGTR | 1 cut(s) | 124 |
| BstF5I | GGATG | 3 cut(s) | 73, 190, 540 |
| BstKTI | GATC | 1 cut(s) | 237 |
| BstMAI | GTCTC | 2 cut(s) | 220, 413 |
| BstMBI | GATC | 1 cut(s) | 234 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 500 |
| BstV1I | GCAGC | 1 cut(s) | 125 |
| BsuRI | GGCC | 1 cut(s) | 516 |
| BtsCI | GGATG | 3 cut(s) | 73, 190, 540 |
| Cfr13I | GGNCC | 1 cut(s) | 317 |
| Csp6I | GTAC | 2 cut(s) | 521, 538 |
| CviAII | CATG | 2 cut(s) | 238, 263 |
| CviJI | RGCY | 4 cut(s) | 167, 293, 503, 516 |
| CviKI_1 | RGCY | 4 cut(s) | 167, 293, 503, 516 |
| CviQI | GTAC | 2 cut(s) | 521, 538 |
| DpnI | GATC | 1 cut(s) | 236 |
| DpnII | GATC | 1 cut(s) | 234 |
| DraI | TTTAAA | 1 cut(s) | 45 |
| Eco47I | GGWCC | 1 cut(s) | 317 |
| EcoRI | GAATTC | 1 cut(s) | 28 |
| FaeI | CATG | 2 cut(s) | 241, 266 |
| FaiI | YATR | 6 cut(s) | 239, 264, 364, 425, 431, 470 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 2 cut(s) | 237, 262 |
| Fnu4HI | GCNGC | 1 cut(s) | 114 |
| FokI | GGATG | 3 cut(s) | 60, 197, 547 |
| Fsp4HI | GCNGC | 1 cut(s) | 114 |
| GluI | GCNGC | 1 cut(s) | 114 |
| HaeIII | GGCC | 1 cut(s) | 516 |
| HapII | CCGG | 1 cut(s) | 182 |
| Hin1II | CATG | 2 cut(s) | 241, 266 |
| HinfI | GANTC | 1 cut(s) | 280 |
| HpaII | CCGG | 1 cut(s) | 182 |
| HphI | GGTGA | 2 cut(s) | 467, 479 |
| Hpy166II | GTNNAC | 1 cut(s) | 475 |
| Hpy188I | TCNGA | 1 cut(s) | 36 |
| Hpy188III | TCNNGA | 1 cut(s) | 401 |
| Hpy8I | GTNNAC | 1 cut(s) | 475 |
| HpyAV | CCTTC | 2 cut(s) | 10, 130 |
| HpyCH4IV | ACGT | 1 cut(s) | 123 |
| HpyCH4V | TGCA | 3 cut(s) | 113, 416, 494 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 500 |
| HpySE526I | ACGT | 1 cut(s) | 123 |
| Hsp92II | CATG | 2 cut(s) | 241, 266 |
| Kzo9I | GATC | 1 cut(s) | 234 |
| LpnPI | CCDG | 1 cut(s) | 195 |
| Lsp1109I | GCAGC | 1 cut(s) | 125 |
| LweI | GCATC | 1 cut(s) | 100 |
| MaeII | ACGT | 1 cut(s) | 123 |
| MaeIII | GTNAC | 1 cut(s) | 249 |
| MalI | GATC | 1 cut(s) | 236 |
| MboI | GATC | 1 cut(s) | 234 |
| MboII | GAAGA | 6 cut(s) | 95, 154, 157, 194, 394, 419 |
| MluCI | AATT | 7 cut(s) | 28, 68, 324, 330, 411, 483, 507 |
| MmeI | TCCRAC | 2 cut(s) | 117, 512 |
| MnlI | CCTC | 3 cut(s) | 153, 459, 463 |
| MroXI | GAANNNNTTC | 1 cut(s) | 333 |
| MseI | TTAA | 2 cut(s) | 44, 60 |
| MspI | CCGG | 1 cut(s) | 182 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 500 |
| NdeII | GATC | 1 cut(s) | 234 |
| NlaIII | CATG | 2 cut(s) | 241, 266 |
| NlaIV | GGNNCC | 1 cut(s) | 91 |
| NmuCI | GTSAC | 1 cut(s) | 249 |
| PdmI | GAANNNNTTC | 1 cut(s) | 333 |
| PfeI | GAWTC | 1 cut(s) | 280 |
| PkrI | GCNGC | 1 cut(s) | 115 |
| Ppu21I | YACGTR | 1 cut(s) | 124 |
| PspN4I | GGNNCC | 1 cut(s) | 91 |
| PspPI | GGNCC | 1 cut(s) | 317 |
| RsaI | GTAC | 2 cut(s) | 522, 539 |
| RsaNI | GTAC | 2 cut(s) | 521, 538 |
| SaqAI | TTAA | 2 cut(s) | 44, 60 |
| SatI | GCNGC | 1 cut(s) | 114 |
| Sau3AI | GATC | 1 cut(s) | 234 |
| Sau96I | GGNCC | 1 cut(s) | 317 |
| SetI | ASST | 9 cut(s) | 58, 121, 126, 164, 295, 443, 480, 492, 505 |
| SfaNI | GCATC | 1 cut(s) | 100 |
| SinI | GGWCC | 1 cut(s) | 317 |
| Sse9I | AATT | 7 cut(s) | 28, 68, 324, 330, 411, 483, 507 |
| SsiI | CCGC | 1 cut(s) | 287 |
| SspI | AATATT | 1 cut(s) | 391 |
| TaiI | ACGT | 1 cut(s) | 126 |
| TasI | AATT | 7 cut(s) | 28, 68, 324, 330, 411, 483, 507 |
| TatI | WGTACW | 1 cut(s) | 520 |
| TfiI | GAWTC | 1 cut(s) | 280 |
| Tru1I | TTAA | 2 cut(s) | 44, 60 |
| Tru9I | TTAA | 2 cut(s) | 44, 60 |
| TseFI | GTSAC | 1 cut(s) | 249 |
| TseI | GCWGC | 1 cut(s) | 113 |
| Tsp45I | GTSAC | 1 cut(s) | 249 |
| TspDTI | ATGAA | 3 cut(s) | 17, 62, 420 |
| VpaK11BI | GGWCC | 1 cut(s) | 317 |
| XapI | RAATTY | 3 cut(s) | 28, 68, 330 |
| XmnI | GAANNNNTTC | 1 cut(s) | 333 |