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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 9 |
| AccB1I | GGYRCC | 2 cut(s) | 337, 832 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 128, 842 |
| AccI | GTMKAC | 3 cut(s) | 609, 817, 1164 |
| AciI | CCGC | 1 cut(s) | 1247 |
| AcoI | YGGCCR | 2 cut(s) | 119, 215 |
| AcsI | RAATTY | 5 cut(s) | 28, 125, 269, 1176, 1235 |
| AcuI | CTGAAG | 1 cut(s) | 1320 |
| AdeI | CACNNNGTG | 1 cut(s) | 956 |
| AfaI | GTAC | 4 cut(s) | 748, 823, 963, 1049 |
| AfeI | AGCGCT | 1 cut(s) | 190 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 128, 461, 512, 842 |
| AflIII | ACRYGT | 1 cut(s) | 114 |
| AgsI | TTSAA | 6 cut(s) | 165, 383, 629, 1109, 1186, 1243 |
| AjnI | CCWGG | 1 cut(s) | 310 |
| AluBI | AGCT | 3 cut(s) | 103, 791, 1130 |
| AluI | AGCT | 3 cut(s) | 103, 791, 1130 |
| Aor51HI | AGCGCT | 1 cut(s) | 190 |
| AoxI | GGCC | 3 cut(s) | 119, 215, 298 |
| ApeKI | GCWGC | 3 cut(s) | 788, 1023, 1264 |
| ApoI | RAATTY | 5 cut(s) | 28, 125, 269, 1176, 1235 |
| AseI | ATTAAT | 1 cut(s) | 177 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 526 |
| AspLEI | GCGC | 1 cut(s) | 191 |
| AspS9I | GGNCC | 1 cut(s) | 299 |
| AsuHPI | GGTGA | 4 cut(s) | 146, 527, 568, 982 |
| BalI | TGGCCA | 2 cut(s) | 121, 217 |
| BanI | GGYRCC | 2 cut(s) | 337, 832 |
| BbvI | GCAGC | 3 cut(s) | 800, 1035, 1276 |
| BccI | CCATC | 3 cut(s) | 56, 164, 773 |
| BciT130I | CCWGG | 1 cut(s) | 312 |
| BciVI | GTATCC | 1 cut(s) | 485 |
| BfaI | CTAG | 2 cut(s) | 155, 765 |
| BfoI | RGCGCY | 1 cut(s) | 192 |
| BfuI | GTATCC | 1 cut(s) | 485 |
| BisI | GCNGC | 3 cut(s) | 789, 1024, 1265 |
| BlsI | GCNGC | 3 cut(s) | 790, 1025, 1266 |
| BmcAI | AGTACT | 1 cut(s) | 963 |
| Bme1390I | CCNGG | 1 cut(s) | 312 |
| BmgT120I | GGNCC | 1 cut(s) | 299 |
| BmiI | GGNNCC | 3 cut(s) | 339, 834, 1308 |
| BmrFI | CCNGG | 1 cut(s) | 312 |
| BmsI | GCATC | 2 cut(s) | 382, 491 |
| Bpu10I | CCTNAGC | 1 cut(s) | 303 |
| BpuEI | CTTGAG | 1 cut(s) | 914 |
| BsaAI | YACGTR | 1 cut(s) | 821 |
| BsaJI | CCNNGG | 2 cut(s) | 248, 945 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 128, 461, 512, 842 |
| Bse1I | ACTGG | 1 cut(s) | 218 |
| BseBI | CCWGG | 1 cut(s) | 312 |
| BseDI | CCNNGG | 2 cut(s) | 248, 945 |
| BseGI | GGATG | 4 cut(s) | 76, 506, 784, 1042 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 128, 461, 512, 842 |
| BseMII | CTCAG | 1 cut(s) | 885 |
| BseNI | ACTGG | 1 cut(s) | 218 |
| BseRI | GAGGAG | 1 cut(s) | 574 |
| BseXI | GCAGC | 3 cut(s) | 800, 1035, 1276 |
| BseYI | CCCAGC | 1 cut(s) | 868 |
| BsgI | GTGCAG | 1 cut(s) | 978 |
| BshFI | GGCC | 3 cut(s) | 121, 217, 300 |
| BshNI | GGYRCC | 2 cut(s) | 337, 832 |
| BsiSI | CCGG | 1 cut(s) | 80 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 128, 461, 512, 842 |
| BsnI | GGCC | 3 cut(s) | 121, 217, 300 |
| Bsp143I | GATC | 1 cut(s) | 799 |
| Bsp19I | CCATGG | 1 cut(s) | 248 |
| BspACI | CCGC | 1 cut(s) | 1247 |
| BspANI | GGCC | 3 cut(s) | 121, 217, 300 |
| BspCNI | CTCAG | 1 cut(s) | 886 |
| BspLI | GGNNCC | 3 cut(s) | 339, 834, 1308 |
| BspT107I | GGYRCC | 2 cut(s) | 337, 832 |
| BsrI | ACTGG | 1 cut(s) | 218 |
| BssECI | CCNNGG | 2 cut(s) | 248, 945 |
| BssMI | GATC | 1 cut(s) | 799 |
| BssT1I | CCWWGG | 1 cut(s) | 248 |
| Bst2UI | CCWGG | 1 cut(s) | 312 |
| Bst4CI | ACNGT | 2 cut(s) | 288, 1033 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 956 |
| BstBAI | YACGTR | 1 cut(s) | 821 |
| BstC8I | GCNNGC | 2 cut(s) | 42, 1269 |
| BstDEI | CTNAG | 3 cut(s) | 303, 888, 894 |
| BstDSI | CCRYGG | 2 cut(s) | 248, 945 |
| BstEII | GGTNACC | 1 cut(s) | 134 |
| BstF5I | GGATG | 4 cut(s) | 76, 506, 784, 1042 |
| BstH2I | RGCGCY | 1 cut(s) | 192 |
| BstHHI | GCGC | 1 cut(s) | 191 |
| BstKTI | GATC | 1 cut(s) | 802 |
| BstMBI | GATC | 1 cut(s) | 799 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 195, 956, 1020, 1127, 1264 |
| BstNI | CCWGG | 1 cut(s) | 312 |
| BstNSI | RCATGY | 4 cut(s) | 44, 118, 689, 977 |
| BstPI | GGTNACC | 1 cut(s) | 134 |
| BstSCI | CCNGG | 1 cut(s) | 310 |
| BstSNI | TACGTA | 1 cut(s) | 821 |
| BstV1I | GCAGC | 3 cut(s) | 800, 1035, 1276 |
| BsuI | GTATCC | 1 cut(s) | 485 |
| BsuRI | GGCC | 3 cut(s) | 121, 217, 300 |
| BtgI | CCRYGG | 2 cut(s) | 248, 945 |
| BtsCI | GGATG | 4 cut(s) | 76, 506, 784, 1042 |
| BtsI | GCAGTG | 1 cut(s) | 680 |
| BtsIMutI | CAGTG | 4 cut(s) | 225, 284, 680, 1038 |
| Cac8I | GCNNGC | 2 cut(s) | 42, 1269 |
| CfoI | GCGC | 1 cut(s) | 191 |
| Cfr13I | GGNCC | 1 cut(s) | 299 |
| CseI | GACGC | 1 cut(s) | 62 |
| CsiI | ACCWGGT | 1 cut(s) | 310 |
| Csp6I | GTAC | 4 cut(s) | 747, 822, 962, 1048 |
| CviAII | CATG | 9 cut(s) | 41, 96, 115, 249, 259, 686, 842, 974, 1051 |
| CviQI | GTAC | 4 cut(s) | 747, 822, 962, 1048 |
| DdeI | CTNAG | 3 cut(s) | 303, 888, 894 |
| DpnI | GATC | 1 cut(s) | 801 |
| DpnII | GATC | 1 cut(s) | 799 |
| DraIII | CACNNNGTG | 1 cut(s) | 956 |
| EaeI | YGGCCR | 2 cut(s) | 119, 215 |
| EciI | GGCGGA | 1 cut(s) | 1262 |
| Eco105I | TACGTA | 1 cut(s) | 821 |
| Eco130I | CCWWGG | 1 cut(s) | 248 |
| Eco32I | GATATC | 2 cut(s) | 294, 322 |
| Eco47III | AGCGCT | 1 cut(s) | 190 |
| Eco57I | CTGAAG | 1 cut(s) | 1320 |
| Eco91I | GGTNACC | 1 cut(s) | 134 |
| EcoO65I | GGTNACC | 1 cut(s) | 134 |
| EcoRI | GAATTC | 1 cut(s) | 1176 |
| EcoRII | CCWGG | 1 cut(s) | 310 |
| EcoRV | GATATC | 2 cut(s) | 294, 322 |
| EcoT14I | CCWWGG | 1 cut(s) | 248 |
| EcoT22I | ATGCAT | 2 cut(s) | 260, 397 |
| ErhI | CCWWGG | 1 cut(s) | 248 |
| FaeI | CATG | 9 cut(s) | 44, 99, 118, 252, 262, 689, 845, 977, 1054 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 395, 427, 1315 |
| FatI | CATG | 9 cut(s) | 40, 95, 114, 248, 258, 685, 841, 973, 1050 |
| FblI | GTMKAC | 3 cut(s) | 609, 817, 1164 |
| Fnu4HI | GCNGC | 3 cut(s) | 789, 1024, 1265 |
| FokI | GGATG | 4 cut(s) | 63, 513, 791, 1049 |
| Fsp4HI | GCNGC | 3 cut(s) | 789, 1024, 1265 |
| FspBI | CTAG | 2 cut(s) | 155, 765 |
| GlaI | GCGC | 1 cut(s) | 190 |
| GluI | GCNGC | 3 cut(s) | 789, 1024, 1265 |
| GsaI | CCCAGC | 1 cut(s) | 872 |
| HaeII | RGCGCY | 1 cut(s) | 192 |
| HaeIII | GGCC | 3 cut(s) | 121, 217, 300 |
| HapII | CCGG | 1 cut(s) | 80 |
| HgaI | GACGC | 1 cut(s) | 62 |
| HhaI | GCGC | 1 cut(s) | 191 |
| Hin1II | CATG | 9 cut(s) | 44, 99, 118, 252, 262, 689, 845, 977, 1054 |
| Hin6I | GCGC | 1 cut(s) | 189 |
| HinP1I | GCGC | 1 cut(s) | 189 |
| HincII | GTYRAC | 2 cut(s) | 109, 282 |
| HindII | GTYRAC | 2 cut(s) | 109, 282 |
| HindIII | AAGCTT | 1 cut(s) | 101 |
| HinfI | GANTC | 2 cut(s) | 86, 1189 |
| HpaI | GTTAAC | 1 cut(s) | 282 |
| HpaII | CCGG | 1 cut(s) | 80 |
| HphI | GGTGA | 4 cut(s) | 146, 527, 568, 982 |
| Hpy166II | GTNNAC | 6 cut(s) | 109, 282, 610, 818, 1165, 1196 |
| Hpy188I | TCNGA | 3 cut(s) | 152, 795, 925 |
| Hpy188III | TCNNGA | 2 cut(s) | 498, 1091 |
| Hpy8I | GTNNAC | 6 cut(s) | 109, 282, 610, 818, 1165, 1196 |
| Hpy99I | CGWCG | 1 cut(s) | 329 |
| HpyAV | CCTTC | 3 cut(s) | 251, 589, 1237 |
| HpyCH4III | ACNGT | 2 cut(s) | 288, 1033 |
| HpyCH4IV | ACGT | 2 cut(s) | 327, 820 |
| HpyCH4V | TGCA | 8 cut(s) | 258, 395, 685, 712, 912, 959, 1023, 1121 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 195, 956, 1020, 1127, 1264 |
| HpyF3I | CTNAG | 3 cut(s) | 303, 888, 894 |
| HpySE526I | ACGT | 2 cut(s) | 327, 820 |
| Hsp92II | CATG | 9 cut(s) | 44, 99, 118, 252, 262, 689, 845, 977, 1054 |
| HspAI | GCGC | 1 cut(s) | 189 |
| KspAI | GTTAAC | 1 cut(s) | 282 |
| Kzo9I | GATC | 1 cut(s) | 799 |
| Lsp1109I | GCAGC | 3 cut(s) | 800, 1035, 1276 |
| LweI | GCATC | 2 cut(s) | 382, 491 |
| MabI | ACCWGGT | 1 cut(s) | 310 |
| MaeI | CTAG | 2 cut(s) | 155, 765 |
| MaeII | ACGT | 2 cut(s) | 327, 820 |
| MaeIII | GTNAC | 3 cut(s) | 134, 229, 678 |
| MalI | GATC | 1 cut(s) | 801 |
| MboI | GATC | 1 cut(s) | 799 |
| MboII | GAAGA | 5 cut(s) | 519, 854, 910, 1136, 1198 |
| MfeI | CAATTG | 1 cut(s) | 1170 |
| MlsI | TGGCCA | 2 cut(s) | 121, 217 |
| MluCI | AATT | 9 cut(s) | 28, 125, 159, 269, 651, 804, 1170, 1176, 1235 |
| MluNI | TGGCCA | 2 cut(s) | 121, 217 |
| MlyI | GAGTC | 1 cut(s) | 80 |
| MmeI | TCCRAC | 1 cut(s) | 175 |
| MnlI | CCTC | 4 cut(s) | 103, 364, 552, 1087 |
| Mox20I | TGGCCA | 2 cut(s) | 121, 217 |
| Mph1103I | ATGCAT | 2 cut(s) | 260, 397 |
| MroXI | GAANNNNTTC | 1 cut(s) | 526 |
| MscI | TGGCCA | 2 cut(s) | 121, 217 |
| MseI | TTAA | 8 cut(s) | 177, 194, 281, 356, 419, 756, 1043, 1061 |
| MslI | CAYNNNNRTG | 3 cut(s) | 253, 1206, 1278 |
| Msp20I | TGGCCA | 2 cut(s) | 121, 217 |
| MspI | CCGG | 1 cut(s) | 80 |
| MspR9I | CCNGG | 1 cut(s) | 312 |
| MunI | CAATTG | 1 cut(s) | 1170 |
| MvaI | CCWGG | 1 cut(s) | 312 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 195, 956, 1020, 1127, 1264 |
| NcoI | CCATGG | 1 cut(s) | 248 |
| NdeII | GATC | 1 cut(s) | 799 |
| NlaIII | CATG | 9 cut(s) | 44, 99, 118, 252, 262, 689, 845, 977, 1054 |
| NlaIV | GGNNCC | 3 cut(s) | 339, 834, 1308 |
| NmuCI | GTSAC | 3 cut(s) | 134, 229, 678 |
| NsiI | ATGCAT | 2 cut(s) | 260, 397 |
| NspI | RCATGY | 4 cut(s) | 44, 118, 689, 977 |
| PaeI | GCATGC | 1 cut(s) | 44 |
| PciI | ACATGT | 1 cut(s) | 114 |
| PdmI | GAANNNNTTC | 1 cut(s) | 526 |
| PfeI | GAWTC | 1 cut(s) | 1189 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 128, 842 |
| PkrI | GCNGC | 3 cut(s) | 790, 1025, 1266 |
| PleI | GAGTC | 1 cut(s) | 80 |
| PpsI | GAGTC | 1 cut(s) | 80 |
| Ppu21I | YACGTR | 1 cut(s) | 821 |
| PscI | ACATGT | 1 cut(s) | 114 |
| PshBI | ATTAAT | 1 cut(s) | 177 |
| PsiI | TTATAA | 1 cut(s) | 9 |
| Psp6I | CCWGG | 1 cut(s) | 310 |
| PspEI | GGTNACC | 1 cut(s) | 134 |
| PspFI | CCCAGC | 1 cut(s) | 868 |
| PspGI | CCWGG | 1 cut(s) | 310 |
| PspN4I | GGNNCC | 3 cut(s) | 339, 834, 1308 |
| PspPI | GGNCC | 1 cut(s) | 299 |
| RsaI | GTAC | 4 cut(s) | 748, 823, 963, 1049 |
| RsaNI | GTAC | 4 cut(s) | 747, 822, 962, 1048 |
| RseI | CAYNNNNRTG | 3 cut(s) | 253, 1206, 1278 |
| SaqAI | TTAA | 8 cut(s) | 177, 194, 281, 356, 419, 756, 1043, 1061 |
| SatI | GCNGC | 3 cut(s) | 789, 1024, 1265 |
| Sau3AI | GATC | 1 cut(s) | 799 |
| Sau96I | GGNCC | 1 cut(s) | 299 |
| ScaI | AGTACT | 1 cut(s) | 963 |
| SchI | GAGTC | 1 cut(s) | 80 |
| ScrFI | CCNGG | 1 cut(s) | 312 |
| SexAI | ACCWGGT | 1 cut(s) | 310 |
| SfaNI | GCATC | 2 cut(s) | 382, 491 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 253, 1206, 1278 |
| SmlI | CTYRAG | 1 cut(s) | 929 |
| SmoI | CTYRAG | 1 cut(s) | 929 |
| SnaBI | TACGTA | 1 cut(s) | 821 |
| SphI | GCATGC | 1 cut(s) | 44 |
| Sse9I | AATT | 9 cut(s) | 28, 125, 159, 269, 651, 804, 1170, 1176, 1235 |
| SsiI | CCGC | 1 cut(s) | 1247 |
| SspI | AATATT | 1 cut(s) | 1059 |
| SspMI | CTAG | 2 cut(s) | 155, 765 |
| StyD4I | CCNGG | 1 cut(s) | 310 |
| StyI | CCWWGG | 1 cut(s) | 248 |
| TaaI | ACNGT | 2 cut(s) | 288, 1033 |
| TaiI | ACGT | 2 cut(s) | 330, 823 |
| TaqI | TCGA | 2 cut(s) | 324, 691 |
| TasI | AATT | 9 cut(s) | 28, 125, 159, 269, 651, 804, 1170, 1176, 1235 |
| TatI | WGTACW | 1 cut(s) | 961 |
| TfiI | GAWTC | 1 cut(s) | 1189 |
| Tru1I | TTAA | 8 cut(s) | 177, 194, 281, 356, 419, 756, 1043, 1061 |
| Tru9I | TTAA | 8 cut(s) | 177, 194, 281, 356, 419, 756, 1043, 1061 |
| TscAI | CASTG | 4 cut(s) | 225, 291, 687, 1038 |
| TseFI | GTSAC | 3 cut(s) | 134, 229, 678 |
| TseI | GCWGC | 3 cut(s) | 788, 1023, 1264 |
| Tsp45I | GTSAC | 3 cut(s) | 134, 229, 678 |
| TspDTI | ATGAA | 2 cut(s) | 275, 1067 |
| TspGWI | ACGGA | 1 cut(s) | 477 |
| TspRI | CASTG | 4 cut(s) | 225, 291, 687, 1038 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 128, 842 |
| VspI | ATTAAT | 1 cut(s) | 177 |
| XapI | RAATTY | 5 cut(s) | 28, 125, 269, 1176, 1235 |
| XceI | RCATGY | 4 cut(s) | 44, 118, 689, 977 |
| XmiI | GTMKAC | 3 cut(s) | 609, 817, 1164 |
| XmnI | GAANNNNTTC | 1 cut(s) | 526 |
| XspI | CTAG | 2 cut(s) | 155, 765 |
| ZrmI | AGTACT | 1 cut(s) | 963 |
| Zsp2I | ATGCAT | 2 cut(s) | 260, 397 |