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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 288 |
| Acc65I | GGTACC | 1 cut(s) | 38 |
| AccB1I | GGYRCC | 1 cut(s) | 38 |
| AciI | CCGC | 1 cut(s) | 497 |
| AclI | AACGTT | 1 cut(s) | 905 |
| AcsI | RAATTY | 1 cut(s) | 735 |
| AfaI | GTAC | 3 cut(s) | 40, 587, 602 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 134, 597, 785, 1116 |
| AgsI | TTSAA | 8 cut(s) | 49, 124, 246, 435, 616, 713, 919, 1105 |
| AjnI | CCWGG | 1 cut(s) | 133 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1060, 1092 |
| AleI | CACNNNNGTG | 1 cut(s) | 837 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 890, 922 |
| AluBI | AGCT | 1 cut(s) | 683 |
| AluI | AGCT | 1 cut(s) | 683 |
| Alw26I | GTCTC | 1 cut(s) | 268 |
| AoxI | GGCC | 2 cut(s) | 147, 1048 |
| ApeKI | GCWGC | 2 cut(s) | 21, 77 |
| ApoI | RAATTY | 1 cut(s) | 735 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 611 |
| Asp718I | GGTACC | 1 cut(s) | 38 |
| AspLEI | GCGC | 1 cut(s) | 791 |
| AspS9I | GGNCC | 3 cut(s) | 137, 563, 1049 |
| AsuC2I | CCSGG | 1 cut(s) | 1118 |
| AsuNHI | GCTAGC | 1 cut(s) | 826 |
| AvaII | GGWCC | 2 cut(s) | 137, 563 |
| AxyI | CCTNAGG | 1 cut(s) | 645 |
| BanI | GGYRCC | 1 cut(s) | 38 |
| BbsI | GAAGAC | 1 cut(s) | 68 |
| BbvI | GCAGC | 2 cut(s) | 8, 64 |
| BccI | CCATC | 4 cut(s) | 65, 262, 573, 1033 |
| BciT130I | CCWGG | 1 cut(s) | 135 |
| BciVI | GTATCC | 1 cut(s) | 716 |
| BcnI | CCSGG | 1 cut(s) | 1118 |
| BcoDI | GTCTC | 1 cut(s) | 268 |
| BfaI | CTAG | 2 cut(s) | 827, 912 |
| BfmI | CTRYAG | 1 cut(s) | 684 |
| BfuI | GTATCC | 1 cut(s) | 716 |
| BisI | GCNGC | 2 cut(s) | 22, 78 |
| BlpI | GCTNAGC | 1 cut(s) | 864 |
| BlsI | GCNGC | 2 cut(s) | 23, 79 |
| Bme1390I | CCNGG | 2 cut(s) | 135, 1118 |
| Bme18I | GGWCC | 2 cut(s) | 137, 563 |
| BmgT120I | GGNCC | 3 cut(s) | 137, 563, 1049 |
| BmiI | GGNNCC | 2 cut(s) | 40, 228 |
| BmrFI | CCNGG | 2 cut(s) | 135, 1118 |
| BmsI | GCATC | 5 cut(s) | 16, 117, 709, 813, 850 |
| BmtI | GCTAGC | 1 cut(s) | 830 |
| BpiI | GAAGAC | 1 cut(s) | 68 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 864 |
| BpuMI | CCSGG | 1 cut(s) | 1118 |
| BsaI | GGTCTC | 1 cut(s) | 268 |
| BsaJI | CCNNGG | 1 cut(s) | 795 |
| BsaWI | WCCGGW | 1 cut(s) | 565 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 890, 920 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 134, 597, 785, 1116 |
| Bse118I | RCCGGY | 1 cut(s) | 364 |
| Bse1I | ACTGG | 2 cut(s) | 288, 974 |
| Bse21I | CCTNAGG | 1 cut(s) | 645 |
| BseBI | CCWGG | 1 cut(s) | 135 |
| BseDI | CCNNGG | 1 cut(s) | 795 |
| BseGI | GGATG | 4 cut(s) | 76, 588, 942, 1044 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 134, 597, 785, 1116 |
| BseMII | CTCAG | 3 cut(s) | 636, 651, 878 |
| BseNI | ACTGG | 2 cut(s) | 288, 974 |
| BseXI | GCAGC | 2 cut(s) | 8, 64 |
| BshFI | GGCC | 2 cut(s) | 149, 1050 |
| BshNI | GGYRCC | 1 cut(s) | 38 |
| BsiSI | CCGG | 3 cut(s) | 365, 566, 1117 |
| BslFI | GGGAC | 1 cut(s) | 980 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 134, 597, 785, 1116 |
| BsmAI | GTCTC | 1 cut(s) | 268 |
| BsmFI | GGGAC | 1 cut(s) | 980 |
| BsnI | GGCC | 2 cut(s) | 149, 1050 |
| Bso31I | GGTCTC | 1 cut(s) | 268 |
| Bsp143I | GATC | 2 cut(s) | 347, 700 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 864 |
| Bsp19I | CCATGG | 1 cut(s) | 795 |
| BspACI | CCGC | 1 cut(s) | 497 |
| BspANI | GGCC | 2 cut(s) | 149, 1050 |
| BspCNI | CTCAG | 3 cut(s) | 637, 652, 877 |
| BspLI | GGNNCC | 2 cut(s) | 40, 228 |
| BspOI | GCTAGC | 1 cut(s) | 830 |
| BspT107I | GGYRCC | 1 cut(s) | 38 |
| BspTNI | GGTCTC | 1 cut(s) | 268 |
| BsrFI | RCCGGY | 1 cut(s) | 364 |
| BsrI | ACTGG | 2 cut(s) | 288, 974 |
| BssAI | RCCGGY | 1 cut(s) | 364 |
| BssECI | CCNNGG | 1 cut(s) | 795 |
| BssMI | GATC | 2 cut(s) | 347, 700 |
| BssT1I | CCWWGG | 1 cut(s) | 795 |
| Bst2UI | CCWGG | 1 cut(s) | 135 |
| Bst4CI | ACNGT | 6 cut(s) | 226, 472, 532, 730, 771, 1124 |
| Bst6I | CTCTTC | 2 cut(s) | 180, 247 |
| BstC8I | GCNNGC | 2 cut(s) | 453, 828 |
| BstDEI | CTNAG | 3 cut(s) | 645, 660, 864 |
| BstDSI | CCRYGG | 1 cut(s) | 795 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 595 |
| BstF5I | GGATG | 4 cut(s) | 76, 588, 942, 1044 |
| BstHHI | GCGC | 1 cut(s) | 791 |
| BstKTI | GATC | 2 cut(s) | 350, 703 |
| BstMAI | GTCTC | 1 cut(s) | 268 |
| BstMBI | GATC | 2 cut(s) | 347, 700 |
| BstNI | CCWGG | 1 cut(s) | 135 |
| BstSCI | CCNGG | 2 cut(s) | 133, 1116 |
| BstSFI | CTRYAG | 1 cut(s) | 684 |
| BstV1I | GCAGC | 2 cut(s) | 8, 64 |
| BstV2I | GAAGAC | 1 cut(s) | 68 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1091 |
| Bsu36I | CCTNAGG | 1 cut(s) | 645 |
| BsuI | GTATCC | 1 cut(s) | 716 |
| BsuRI | GGCC | 2 cut(s) | 149, 1050 |
| BtgI | CCRYGG | 1 cut(s) | 795 |
| BtgZI | GCGATG | 1 cut(s) | 39 |
| BtsCI | GGATG | 4 cut(s) | 76, 588, 942, 1044 |
| BtsIMutI | CAGTG | 2 cut(s) | 726, 776 |
| Cac8I | GCNNGC | 2 cut(s) | 453, 828 |
| CfoI | GCGC | 1 cut(s) | 791 |
| Cfr10I | RCCGGY | 1 cut(s) | 364 |
| Cfr13I | GGNCC | 3 cut(s) | 137, 563, 1049 |
| CsiI | ACCWGGT | 1 cut(s) | 133 |
| Csp6I | GTAC | 3 cut(s) | 39, 586, 601 |
| CviAII | CATG | 6 cut(s) | 94, 302, 604, 796, 877, 1085 |
| CviJI | RGCY | 7 cut(s) | 127, 149, 364, 683, 750, 868, 1050 |
| CviKI_1 | RGCY | 7 cut(s) | 127, 149, 364, 683, 750, 868, 1050 |
| CviQI | GTAC | 3 cut(s) | 39, 586, 601 |
| DdeI | CTNAG | 3 cut(s) | 645, 660, 864 |
| DpnI | GATC | 2 cut(s) | 349, 702 |
| DpnII | GATC | 2 cut(s) | 347, 700 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 288 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 288 |
| Eam1104I | CTCTTC | 2 cut(s) | 180, 247 |
| EarI | CTCTTC | 2 cut(s) | 180, 247 |
| Eco130I | CCWWGG | 1 cut(s) | 795 |
| Eco31I | GGTCTC | 1 cut(s) | 268 |
| Eco47I | GGWCC | 2 cut(s) | 137, 563 |
| Eco81I | CCTNAGG | 1 cut(s) | 645 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 595 |
| EcoRI | GAATTC | 1 cut(s) | 735 |
| EcoRII | CCWGG | 1 cut(s) | 133 |
| EcoT14I | CCWWGG | 1 cut(s) | 795 |
| ErhI | CCWWGG | 1 cut(s) | 795 |
| FaeI | CATG | 6 cut(s) | 97, 305, 607, 799, 880, 1088 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1060, 1092 |
| FaqI | GGGAC | 1 cut(s) | 980 |
| FatI | CATG | 6 cut(s) | 93, 301, 603, 795, 876, 1084 |
| FauI | CCCGC | 1 cut(s) | 504 |
| FauNDI | CATATG | 1 cut(s) | 885 |
| Fnu4HI | GCNGC | 2 cut(s) | 22, 78 |
| FokI | GGATG | 4 cut(s) | 83, 595, 949, 1051 |
| Fsp4HI | GCNGC | 2 cut(s) | 22, 78 |
| FspBI | CTAG | 2 cut(s) | 827, 912 |
| GlaI | GCGC | 1 cut(s) | 790 |
| GluI | GCNGC | 2 cut(s) | 22, 78 |
| HaeIII | GGCC | 2 cut(s) | 149, 1050 |
| HapII | CCGG | 3 cut(s) | 365, 566, 1117 |
| HhaI | GCGC | 1 cut(s) | 791 |
| Hin1II | CATG | 6 cut(s) | 97, 305, 607, 799, 880, 1088 |
| Hin6I | GCGC | 1 cut(s) | 789 |
| HinP1I | GCGC | 1 cut(s) | 789 |
| HincII | GTYRAC | 3 cut(s) | 676, 903, 1099 |
| HindII | GTYRAC | 3 cut(s) | 676, 903, 1099 |
| HinfI | GANTC | 4 cut(s) | 256, 319, 520, 915 |
| HpaI | GTTAAC | 1 cut(s) | 903 |
| HpaII | CCGG | 3 cut(s) | 365, 566, 1117 |
| Hpy166II | GTNNAC | 3 cut(s) | 676, 903, 1099 |
| Hpy188I | TCNGA | 4 cut(s) | 113, 578, 700, 1024 |
| Hpy188III | TCNNGA | 6 cut(s) | 46, 265, 435, 644, 919, 1007 |
| Hpy8I | GTNNAC | 3 cut(s) | 676, 903, 1099 |
| HpyAV | CCTTC | 1 cut(s) | 510 |
| HpyCH4III | ACNGT | 6 cut(s) | 226, 472, 532, 730, 771, 1124 |
| HpyCH4IV | ACGT | 2 cut(s) | 513, 905 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 204, 341, 451, 774, 889, 989 |
| HpyF3I | CTNAG | 3 cut(s) | 645, 660, 864 |
| HpySE526I | ACGT | 2 cut(s) | 513, 905 |
| Hsp92II | CATG | 6 cut(s) | 97, 305, 607, 799, 880, 1088 |
| HspAI | GCGC | 1 cut(s) | 789 |
| KpnI | GGTACC | 1 cut(s) | 42 |
| KspAI | GTTAAC | 1 cut(s) | 903 |
| Kzo9I | GATC | 2 cut(s) | 347, 700 |
| LmnI | GCTCC | 1 cut(s) | 880 |
| Lsp1109I | GCAGC | 2 cut(s) | 8, 64 |
| LweI | GCATC | 5 cut(s) | 16, 117, 709, 813, 850 |
| MabI | ACCWGGT | 1 cut(s) | 133 |
| MaeI | CTAG | 2 cut(s) | 827, 912 |
| MaeII | ACGT | 2 cut(s) | 513, 905 |
| MaeIII | GTNAC | 1 cut(s) | 153 |
| MalI | GATC | 2 cut(s) | 349, 702 |
| MboI | GATC | 2 cut(s) | 347, 700 |
| MfeI | CAATTG | 2 cut(s) | 336, 890 |
| MmeI | TCCRAC | 2 cut(s) | 149, 876 |
| MnlI | CCTC | 6 cut(s) | 53, 246, 591, 640, 751, 993 |
| MroXI | GAANNNNTTC | 1 cut(s) | 611 |
| MseI | TTAA | 7 cut(s) | 278, 294, 402, 441, 527, 902, 974 |
| MslI | CAYNNNNRTG | 3 cut(s) | 608, 837, 1089 |
| MspI | CCGG | 3 cut(s) | 365, 566, 1117 |
| MspR9I | CCNGG | 2 cut(s) | 135, 1118 |
| MunI | CAATTG | 2 cut(s) | 336, 890 |
| MvaI | CCWGG | 1 cut(s) | 135 |
| NciI | CCSGG | 1 cut(s) | 1118 |
| NcoI | CCATGG | 1 cut(s) | 795 |
| NdeI | CATATG | 1 cut(s) | 885 |
| NdeII | GATC | 2 cut(s) | 347, 700 |
| NheI | GCTAGC | 1 cut(s) | 826 |
| NlaIII | CATG | 6 cut(s) | 97, 305, 607, 799, 880, 1088 |
| NlaIV | GGNNCC | 2 cut(s) | 40, 228 |
| OliI | CACNNNNGTG | 1 cut(s) | 837 |
| PdmI | GAANNNNTTC | 1 cut(s) | 611 |
| PfeI | GAWTC | 4 cut(s) | 256, 319, 520, 915 |
| PkrI | GCNGC | 2 cut(s) | 23, 79 |
| Psp1406I | AACGTT | 1 cut(s) | 905 |
| Psp6I | CCWGG | 1 cut(s) | 133 |
| PspGI | CCWGG | 1 cut(s) | 133 |
| PspN4I | GGNNCC | 2 cut(s) | 40, 228 |
| PspPI | GGNCC | 3 cut(s) | 137, 563, 1049 |
| RsaI | GTAC | 3 cut(s) | 40, 587, 602 |
| RsaNI | GTAC | 3 cut(s) | 39, 586, 601 |
| RseI | CAYNNNNRTG | 3 cut(s) | 608, 837, 1089 |
| SaqAI | TTAA | 7 cut(s) | 278, 294, 402, 441, 527, 902, 974 |
| SatI | GCNGC | 2 cut(s) | 22, 78 |
| Sau3AI | GATC | 2 cut(s) | 347, 700 |
| Sau96I | GGNCC | 3 cut(s) | 137, 563, 1049 |
| ScrFI | CCNGG | 2 cut(s) | 135, 1118 |
| SexAI | ACCWGGT | 1 cut(s) | 133 |
| SfaNI | GCATC | 5 cut(s) | 16, 117, 709, 813, 850 |
| SfcI | CTRYAG | 1 cut(s) | 684 |
| SinI | GGWCC | 2 cut(s) | 137, 563 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 608, 837, 1089 |
| SsiI | CCGC | 1 cut(s) | 497 |
| SspMI | CTAG | 2 cut(s) | 827, 912 |
| StyD4I | CCNGG | 2 cut(s) | 133, 1116 |
| StyI | CCWWGG | 1 cut(s) | 795 |
| TaaI | ACNGT | 6 cut(s) | 226, 472, 532, 730, 771, 1124 |
| TaiI | ACGT | 2 cut(s) | 516, 908 |
| TaqI | TCGA | 2 cut(s) | 266, 634 |
| TatI | WGTACW | 1 cut(s) | 585 |
| TfiI | GAWTC | 4 cut(s) | 256, 319, 520, 915 |
| Tru1I | TTAA | 7 cut(s) | 278, 294, 402, 441, 527, 902, 974 |
| Tru9I | TTAA | 7 cut(s) | 278, 294, 402, 441, 527, 902, 974 |
| TscAI | CASTG | 2 cut(s) | 733, 776 |
| TseI | GCWGC | 2 cut(s) | 21, 77 |
| TspDTI | ATGAA | 7 cut(s) | 198, 512, 524, 620, 865, 1068, 1074 |
| TspRI | CASTG | 2 cut(s) | 733, 776 |
| VpaK11BI | GGWCC | 2 cut(s) | 137, 563 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 595 |
| XapI | RAATTY | 1 cut(s) | 735 |
| XmnI | GAANNNNTTC | 1 cut(s) | 611 |
| XspI | CTAG | 2 cut(s) | 827, 912 |