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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 195 |
| AcsI | RAATTY | 1 cut(s) | 571 |
| AfaI | GTAC | 2 cut(s) | 494, 509 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 41 |
| AgsI | TTSAA | 7 cut(s) | 31, 124, 174, 310, 342, 350, 523 |
| AjnI | CCWGG | 1 cut(s) | 40 |
| AluBI | AGCT | 1 cut(s) | 362 |
| AluI | AGCT | 1 cut(s) | 362 |
| Alw26I | GTCTC | 1 cut(s) | 181 |
| AoxI | GGCC | 1 cut(s) | 54 |
| ApeKI | GCWGC | 1 cut(s) | 85 |
| ApoI | RAATTY | 1 cut(s) | 571 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 518 |
| AspLEI | GCGC | 1 cut(s) | 144 |
| AspS9I | GGNCC | 3 cut(s) | 44, 54, 470 |
| AsuHPI | GGTGA | 2 cut(s) | 340, 533 |
| AvaII | GGWCC | 2 cut(s) | 44, 470 |
| AxyI | CCTNAGG | 1 cut(s) | 552 |
| BbvI | GCAGC | 1 cut(s) | 72 |
| BccI | CCATC | 2 cut(s) | 450, 480 |
| BciT130I | CCWGG | 1 cut(s) | 42 |
| BcoDI | GTCTC | 1 cut(s) | 181 |
| BfaI | CTAG | 1 cut(s) | 89 |
| BisI | GCNGC | 1 cut(s) | 86 |
| BlsI | GCNGC | 1 cut(s) | 87 |
| Bme1390I | CCNGG | 1 cut(s) | 42 |
| Bme18I | GGWCC | 2 cut(s) | 44, 470 |
| BmgT120I | GGNCC | 3 cut(s) | 44, 54, 470 |
| BmiI | GGNNCC | 1 cut(s) | 135 |
| BmrFI | CCNGG | 1 cut(s) | 42 |
| BmsI | GCATC | 2 cut(s) | 24, 345 |
| BpuEI | CTTGAG | 1 cut(s) | 406 |
| BsaWI | WCCGGW | 1 cut(s) | 472 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 41 |
| Bse118I | RCCGGY | 1 cut(s) | 271 |
| Bse21I | CCTNAGG | 1 cut(s) | 552 |
| BseBI | CCWGG | 1 cut(s) | 42 |
| BseGI | GGATG | 1 cut(s) | 495 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 41 |
| BseMII | CTCAG | 2 cut(s) | 543, 558 |
| BseXI | GCAGC | 1 cut(s) | 72 |
| BshFI | GGCC | 1 cut(s) | 56 |
| BsiSI | CCGG | 2 cut(s) | 272, 473 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 41 |
| BsmAI | GTCTC | 1 cut(s) | 181 |
| BsnI | GGCC | 1 cut(s) | 56 |
| Bsp143I | GATC | 1 cut(s) | 254 |
| BspANI | GGCC | 1 cut(s) | 56 |
| BspCNI | CTCAG | 2 cut(s) | 544, 559 |
| BspLI | GGNNCC | 1 cut(s) | 135 |
| BspQI | GCTCTTC | 1 cut(s) | 118 |
| BsrFI | RCCGGY | 1 cut(s) | 271 |
| BssAI | RCCGGY | 1 cut(s) | 271 |
| BssMI | GATC | 1 cut(s) | 254 |
| Bst2UI | CCWGG | 1 cut(s) | 42 |
| Bst4CI | ACNGT | 3 cut(s) | 133, 379, 439 |
| Bst6I | CTCTTC | 1 cut(s) | 118 |
| BstC8I | GCNNGC | 1 cut(s) | 360 |
| BstDEI | CTNAG | 2 cut(s) | 552, 567 |
| BstF5I | GGATG | 1 cut(s) | 495 |
| BstHHI | GCGC | 1 cut(s) | 144 |
| BstKTI | GATC | 1 cut(s) | 257 |
| BstMAI | GTCTC | 1 cut(s) | 181 |
| BstMBI | GATC | 1 cut(s) | 254 |
| BstNI | CCWGG | 1 cut(s) | 42 |
| BstSCI | CCNGG | 1 cut(s) | 40 |
| BstV1I | GCAGC | 1 cut(s) | 72 |
| Bsu36I | CCTNAGG | 1 cut(s) | 552 |
| BsuRI | GGCC | 1 cut(s) | 56 |
| BtsCI | GGATG | 1 cut(s) | 495 |
| Cac8I | GCNNGC | 1 cut(s) | 360 |
| CfoI | GCGC | 1 cut(s) | 144 |
| Cfr10I | RCCGGY | 1 cut(s) | 271 |
| Cfr13I | GGNCC | 3 cut(s) | 44, 54, 470 |
| CsiI | ACCWGGT | 1 cut(s) | 40 |
| Csp6I | GTAC | 2 cut(s) | 493, 508 |
| CviAII | CATG | 2 cut(s) | 209, 511 |
| CviJI | RGCY | 4 cut(s) | 34, 56, 271, 362 |
| CviKI_1 | RGCY | 4 cut(s) | 34, 56, 271, 362 |
| CviQI | GTAC | 2 cut(s) | 493, 508 |
| DdeI | CTNAG | 2 cut(s) | 552, 567 |
| DpnI | GATC | 1 cut(s) | 256 |
| DpnII | GATC | 1 cut(s) | 254 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 195 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 195 |
| Eam1104I | CTCTTC | 1 cut(s) | 118 |
| EarI | CTCTTC | 1 cut(s) | 118 |
| Eco47I | GGWCC | 2 cut(s) | 44, 470 |
| Eco81I | CCTNAGG | 1 cut(s) | 552 |
| EcoRII | CCWGG | 1 cut(s) | 40 |
| FaeI | CATG | 2 cut(s) | 212, 514 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 351, 383 |
| FatI | CATG | 2 cut(s) | 208, 510 |
| Fnu4HI | GCNGC | 1 cut(s) | 86 |
| FokI | GGATG | 1 cut(s) | 502 |
| Fsp4HI | GCNGC | 1 cut(s) | 86 |
| FspBI | CTAG | 1 cut(s) | 89 |
| GlaI | GCGC | 1 cut(s) | 143 |
| GluI | GCNGC | 1 cut(s) | 86 |
| HaeIII | GGCC | 1 cut(s) | 56 |
| HapII | CCGG | 2 cut(s) | 272, 473 |
| HhaI | GCGC | 1 cut(s) | 144 |
| Hin1II | CATG | 2 cut(s) | 212, 514 |
| Hin6I | GCGC | 1 cut(s) | 142 |
| HinP1I | GCGC | 1 cut(s) | 142 |
| HinfI | GANTC | 4 cut(s) | 163, 189, 232, 427 |
| HpaII | CCGG | 2 cut(s) | 272, 473 |
| HphI | GGTGA | 2 cut(s) | 340, 533 |
| Hpy188I | TCNGA | 2 cut(s) | 20, 48 |
| Hpy188III | TCNNGA | 1 cut(s) | 551 |
| HpyCH4III | ACNGT | 3 cut(s) | 133, 379, 439 |
| HpyCH4V | TGCA | 2 cut(s) | 229, 358 |
| HpyF3I | CTNAG | 2 cut(s) | 552, 567 |
| Hsp92II | CATG | 2 cut(s) | 212, 514 |
| HspAI | GCGC | 1 cut(s) | 142 |
| Kzo9I | GATC | 1 cut(s) | 254 |
| LguI | GCTCTTC | 1 cut(s) | 118 |
| LpnPI | CCDG | 8 cut(s) | 27, 54, 150, 152, 255, 285, 486, 564 |
| Lsp1109I | GCAGC | 1 cut(s) | 72 |
| LweI | GCATC | 2 cut(s) | 24, 345 |
| MabI | ACCWGGT | 1 cut(s) | 40 |
| MaeI | CTAG | 1 cut(s) | 89 |
| MaeIII | GTNAC | 1 cut(s) | 539 |
| MalI | GATC | 1 cut(s) | 256 |
| MboI | GATC | 1 cut(s) | 254 |
| MboII | GAAGA | 7 cut(s) | 105, 109, 191, 227, 298, 391, 473 |
| MluCI | AATT | 2 cut(s) | 315, 571 |
| MlyI | GAGTC | 1 cut(s) | 183 |
| MmeI | TCCRAC | 1 cut(s) | 56 |
| MnlI | CCTC | 2 cut(s) | 498, 547 |
| MroXI | GAANNNNTTC | 1 cut(s) | 518 |
| MseI | TTAA | 2 cut(s) | 201, 434 |
| MslI | CAYNNNNRTG | 2 cut(s) | 224, 515 |
| MspI | CCGG | 2 cut(s) | 272, 473 |
| MspR9I | CCNGG | 1 cut(s) | 42 |
| MvaI | CCWGG | 1 cut(s) | 42 |
| NdeII | GATC | 1 cut(s) | 254 |
| NlaIII | CATG | 2 cut(s) | 212, 514 |
| NlaIV | GGNNCC | 1 cut(s) | 135 |
| NmuCI | GTSAC | 1 cut(s) | 539 |
| PciSI | GCTCTTC | 1 cut(s) | 118 |
| PdmI | GAANNNNTTC | 1 cut(s) | 518 |
| PfeI | GAWTC | 3 cut(s) | 163, 232, 427 |
| PkrI | GCNGC | 1 cut(s) | 87 |
| PleI | GAGTC | 1 cut(s) | 183 |
| PpsI | GAGTC | 1 cut(s) | 183 |
| Psp6I | CCWGG | 1 cut(s) | 40 |
| PspGI | CCWGG | 1 cut(s) | 40 |
| PspN4I | GGNNCC | 1 cut(s) | 135 |
| PspPI | GGNCC | 3 cut(s) | 44, 54, 470 |
| RsaI | GTAC | 2 cut(s) | 494, 509 |
| RsaNI | GTAC | 2 cut(s) | 493, 508 |
| RseI | CAYNNNNRTG | 2 cut(s) | 224, 515 |
| SapI | GCTCTTC | 1 cut(s) | 118 |
| SaqAI | TTAA | 2 cut(s) | 201, 434 |
| SatI | GCNGC | 1 cut(s) | 86 |
| Sau3AI | GATC | 1 cut(s) | 254 |
| Sau96I | GGNCC | 3 cut(s) | 44, 54, 470 |
| SchI | GAGTC | 1 cut(s) | 183 |
| ScrFI | CCNGG | 1 cut(s) | 42 |
| SetI | ASST | 7 cut(s) | 43, 281, 330, 364, 369, 409, 509 |
| SexAI | ACCWGGT | 1 cut(s) | 40 |
| SfaNI | GCATC | 2 cut(s) | 24, 345 |
| SinI | GGWCC | 2 cut(s) | 44, 470 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 224, 515 |
| SmlI | CTYRAG | 1 cut(s) | 385 |
| SmoI | CTYRAG | 1 cut(s) | 385 |
| Sse9I | AATT | 2 cut(s) | 315, 571 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 1 cut(s) | 89 |
| StyD4I | CCNGG | 1 cut(s) | 40 |
| TaaI | ACNGT | 3 cut(s) | 133, 379, 439 |
| TaqI | TCGA | 2 cut(s) | 417, 484 |
| TasI | AATT | 2 cut(s) | 315, 571 |
| TfiI | GAWTC | 3 cut(s) | 163, 232, 427 |
| Tru1I | TTAA | 2 cut(s) | 201, 434 |
| Tru9I | TTAA | 2 cut(s) | 201, 434 |
| TseFI | GTSAC | 1 cut(s) | 539 |
| TseI | GCWGC | 1 cut(s) | 85 |
| Tsp45I | GTSAC | 1 cut(s) | 539 |
| TspDTI | ATGAA | 2 cut(s) | 419, 527 |
| VpaK11BI | GGWCC | 2 cut(s) | 44, 470 |
| XapI | RAATTY | 1 cut(s) | 571 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 64 |
| XmnI | GAANNNNTTC | 1 cut(s) | 518 |
| XspI | CTAG | 1 cut(s) | 89 |