Domain of unknown function (DUF4216)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2052 |
| AarI | CACCTGC | 1 cut(s) | 460 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1724 |
| Acc36I | ACCTGC | 1 cut(s) | 460 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1025, 2441 |
| AccI | GTMKAC | 3 cut(s) | 1052, 1846, 2115 |
| AccII | CGCG | 2 cut(s) | 349, 2067 |
| AccIII | TCCGGA | 1 cut(s) | 2095 |
| AciI | CCGC | 4 cut(s) | 347, 785, 964, 1961 |
| AclWI | GGATC | 4 cut(s) | 2231, 2244, 2663, 2744 |
| AcoI | YGGCCR | 2 cut(s) | 1319, 2274 |
| AcuI | CTGAAG | 3 cut(s) | 338, 1411, 1887 |
| AcvI | CACGTG | 1 cut(s) | 1292 |
| AfaI | GTAC | 7 cut(s) | 259, 269, 379, 844, 1874, 1910, 2070 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 422, 872, 986, 1025, 1127, 2263, 2441, 2873 |
| AflII | CTTAAG | 1 cut(s) | 1820 |
| AgsI | TTSAA | 5 cut(s) | 287, 762, 1312, 1992, 2522 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 348 |
| AjnI | CCWGG | 2 cut(s) | 655, 670 |
| AleI | CACNNNNGTG | 1 cut(s) | 1617 |
| Alw26I | GTCTC | 4 cut(s) | 110, 272, 1043, 1093 |
| AlwI | GGATC | 4 cut(s) | 2231, 2244, 2663, 2744 |
| Aor13HI | TCCGGA | 1 cut(s) | 2095 |
| AoxI | GGCC | 8 cut(s) | 575, 1319, 1430, 1495, 1768, 1793, 1887, 2274 |
| ApeKI | GCWGC | 4 cut(s) | 740, 966, 1537, 1757 |
| AseI | ATTAAT | 2 cut(s) | 2322, 2343 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 310, 914 |
| AspLEI | GCGC | 1 cut(s) | 27 |
| AspS9I | GGNCC | 7 cut(s) | 576, 659, 1130, 1726, 1769, 1935, 2282 |
| AsuHPI | GGTGA | 4 cut(s) | 125, 441, 887, 2912 |
| AsuII | TTCGAA | 2 cut(s) | 1783, 2338 |
| AvaII | GGWCC | 5 cut(s) | 659, 1130, 1726, 1935, 2282 |
| AxyI | CCTNAGG | 1 cut(s) | 1851 |
| BalI | TGGCCA | 2 cut(s) | 1321, 2276 |
| BamHI | GGATCC | 1 cut(s) | 2236 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 614, 646 |
| BauI | CACGAG | 1 cut(s) | 2712 |
| BbrPI | CACGTG | 1 cut(s) | 1292 |
| BbsI | GAAGAC | 1 cut(s) | 344 |
| BbvI | GCAGC | 4 cut(s) | 727, 978, 1524, 1744 |
| BceAI | ACGGC | 1 cut(s) | 1355 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1400, 1434 |
| BciT130I | CCWGG | 2 cut(s) | 657, 672 |
| BciVI | GTATCC | 1 cut(s) | 489 |
| BcoDI | GTCTC | 4 cut(s) | 110, 272, 1043, 1093 |
| BfaI | CTAG | 2 cut(s) | 20, 1688 |
| BfmI | CTRYAG | 3 cut(s) | 1058, 1797, 2553 |
| BfrI | CTTAAG | 1 cut(s) | 1820 |
| BfuAI | ACCTGC | 1 cut(s) | 460 |
| BfuI | GTATCC | 1 cut(s) | 489 |
| BisI | GCNGC | 5 cut(s) | 741, 786, 967, 1538, 1758 |
| BlpI | GCTNAGC | 1 cut(s) | 520 |
| BlsI | GCNGC | 5 cut(s) | 742, 787, 968, 1539, 1759 |
| BmcAI | AGTACT | 1 cut(s) | 844 |
| Bme1390I | CCNGG | 2 cut(s) | 657, 672 |
| Bme18I | GGWCC | 5 cut(s) | 659, 1130, 1726, 1935, 2282 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 348 |
| BmgT120I | GGNCC | 7 cut(s) | 576, 659, 1130, 1726, 1769, 1935, 2282 |
| BmiI | GGNNCC | 4 cut(s) | 661, 699, 962, 2238 |
| BmrFI | CCNGG | 2 cut(s) | 657, 672 |
| BpiI | GAAGAC | 1 cut(s) | 344 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 547, 579 |
| BpmI | CTGGAG | 2 cut(s) | 654, 1350 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 520 |
| Bpu14I | TTCGAA | 2 cut(s) | 1783, 2338 |
| BsaAI | YACGTR | 2 cut(s) | 1292, 2692 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2430, 2910 |
| BsaI | GGTCTC | 1 cut(s) | 272 |
| BsaJI | CCNNGG | 4 cut(s) | 608, 671, 1094, 1133 |
| BsaWI | WCCGGW | 1 cut(s) | 2095 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2847, 2877 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 422, 872, 986, 1025, 1127, 2263, 2441, 2873 |
| Bse1I | ACTGG | 3 cut(s) | 1030, 2207, 2285 |
| Bse21I | CCTNAGG | 1 cut(s) | 1851 |
| Bse3DI | GCAATG | 1 cut(s) | 1875 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2430, 2910 |
| BseAI | TCCGGA | 1 cut(s) | 2095 |
| BseBI | CCWGG | 2 cut(s) | 657, 672 |
| BseDI | CCNNGG | 4 cut(s) | 608, 671, 1094, 1133 |
| BseGI | GGATG | 8 cut(s) | 436, 736, 1009, 1117, 1330, 1421, 2166, 2800 |
| BseJI | GATNNNNATC | 2 cut(s) | 2430, 2910 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 422, 872, 986, 1025, 1127, 2263, 2441, 2873 |
| BseMI | GCAATG | 1 cut(s) | 1875 |
| BseMII | CTCAG | 1 cut(s) | 1842 |
| BseNI | ACTGG | 3 cut(s) | 1030, 2207, 2285 |
| BseRI | GAGGAG | 2 cut(s) | 1083, 2510 |
| BseXI | GCAGC | 4 cut(s) | 727, 978, 1524, 1744 |
| Bsh1236I | CGCG | 2 cut(s) | 349, 2067 |
| BshFI | GGCC | 8 cut(s) | 577, 1321, 1432, 1497, 1770, 1795, 1889, 2276 |
| BsiSI | CCGG | 4 cut(s) | 815, 1347, 1933, 2096 |
| BslFI | GGGAC | 3 cut(s) | 645, 942, 2633 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 422, 872, 986, 1025, 1127, 2263, 2441, 2873 |
| BsmAI | GTCTC | 4 cut(s) | 110, 272, 1043, 1093 |
| BsmBI | CGTCTC | 1 cut(s) | 1093 |
| BsmFI | GGGAC | 3 cut(s) | 645, 942, 2633 |
| BsnI | GGCC | 8 cut(s) | 577, 1321, 1432, 1497, 1770, 1795, 1889, 2276 |
| Bso31I | GGTCTC | 1 cut(s) | 272 |
| Bsp119I | TTCGAA | 2 cut(s) | 1783, 2338 |
| Bsp13I | TCCGGA | 1 cut(s) | 2095 |
| Bsp143I | GATC | 7 cut(s) | 160, 409, 2236, 2668, 2716, 2749, 2911 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 520 |
| Bsp19I | CCATGG | 1 cut(s) | 608 |
| BspACI | CCGC | 4 cut(s) | 347, 785, 964, 1961 |
| BspANI | GGCC | 8 cut(s) | 577, 1321, 1432, 1497, 1770, 1795, 1889, 2276 |
| BspCNI | CTCAG | 1 cut(s) | 1843 |
| BspEI | TCCGGA | 1 cut(s) | 2095 |
| BspFNI | CGCG | 2 cut(s) | 349, 2067 |
| BspHI | TCATGA | 2 cut(s) | 1507, 2921 |
| BspLI | GGNNCC | 4 cut(s) | 661, 699, 962, 2238 |
| BspMI | ACCTGC | 1 cut(s) | 460 |
| BspPI | GGATC | 4 cut(s) | 2231, 2244, 2663, 2744 |
| BspT104I | TTCGAA | 2 cut(s) | 1783, 2338 |
| BspTI | CTTAAG | 1 cut(s) | 1820 |
| BspTNI | GGTCTC | 1 cut(s) | 272 |
| BsrDI | GCAATG | 1 cut(s) | 1875 |
| BsrI | ACTGG | 3 cut(s) | 1030, 2207, 2285 |
| BssECI | CCNNGG | 4 cut(s) | 608, 671, 1094, 1133 |
| BssMI | GATC | 7 cut(s) | 160, 409, 2236, 2668, 2716, 2749, 2911 |
| BssSI | CACGAG | 1 cut(s) | 2712 |
| BssT1I | CCWWGG | 2 cut(s) | 608, 1133 |
| Bst2BI | CACGAG | 1 cut(s) | 2712 |
| Bst2UI | CCWGG | 2 cut(s) | 657, 672 |
| Bst4CI | ACNGT | 9 cut(s) | 131, 569, 592, 1062, 1442, 2248, 2282, 2378, 2833 |
| Bst6I | CTCTTC | 1 cut(s) | 2124 |
| BstAFI | CTTAAG | 1 cut(s) | 1820 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1534 |
| BstBAI | YACGTR | 2 cut(s) | 1292, 2692 |
| BstBI | TTCGAA | 2 cut(s) | 1783, 2338 |
| BstC8I | GCNNGC | 5 cut(s) | 193, 402, 1344, 1685, 1768 |
| BstDEI | CTNAG | 6 cut(s) | 520, 846, 1198, 1615, 1744, 1851 |
| BstDSI | CCRYGG | 1 cut(s) | 608 |
| BstF5I | GGATG | 8 cut(s) | 436, 736, 1009, 1117, 1330, 1421, 2166, 2800 |
| BstFNI | CGCG | 2 cut(s) | 349, 2067 |
| BstHHI | GCGC | 1 cut(s) | 27 |
| BstKTI | GATC | 7 cut(s) | 163, 412, 2239, 2671, 2719, 2752, 2914 |
| BstMAI | GTCTC | 4 cut(s) | 110, 272, 1043, 1093 |
| BstMBI | GATC | 7 cut(s) | 160, 409, 2236, 2668, 2716, 2749, 2911 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 355, 1327, 1534, 1754, 1763, 1886, 2642 |
| BstNI | CCWGG | 2 cut(s) | 657, 672 |
| BstNSI | RCATGY | 2 cut(s) | 404, 637 |
| BstSCI | CCNGG | 2 cut(s) | 655, 670 |
| BstSFI | CTRYAG | 3 cut(s) | 1058, 1797, 2553 |
| BstUI | CGCG | 2 cut(s) | 349, 2067 |
| BstV1I | GCAGC | 4 cut(s) | 727, 978, 1524, 1744 |
| BstV2I | GAAGAC | 1 cut(s) | 344 |
| BstX2I | RGATCY | 2 cut(s) | 2236, 2668 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1912, 2292 |
| BstYI | RGATCY | 2 cut(s) | 2236, 2668 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1851 |
| BsuI | GTATCC | 1 cut(s) | 489 |
| BsuRI | GGCC | 8 cut(s) | 577, 1321, 1432, 1497, 1770, 1795, 1889, 2276 |
| BtgI | CCRYGG | 1 cut(s) | 608 |
| BtsCI | GGATG | 8 cut(s) | 436, 736, 1009, 1117, 1330, 1421, 2166, 2800 |
| BtsI | GCAGTG | 1 cut(s) | 74 |
| BtsIMutI | CAGTG | 2 cut(s) | 74, 2383 |
| BveI | ACCTGC | 1 cut(s) | 460 |
| Cac8I | GCNNGC | 5 cut(s) | 193, 402, 1344, 1685, 1768 |
| CciI | TCATGA | 2 cut(s) | 1507, 2921 |
| CfoI | GCGC | 1 cut(s) | 27 |
| Cfr13I | GGNCC | 7 cut(s) | 576, 659, 1130, 1726, 1769, 1935, 2282 |
| CseI | GACGC | 3 cut(s) | 338, 347, 1456 |
| Csp6I | GTAC | 7 cut(s) | 258, 268, 378, 843, 1873, 1909, 2069 |
| CviQI | GTAC | 7 cut(s) | 258, 268, 378, 843, 1873, 1909, 2069 |
| DdeI | CTNAG | 6 cut(s) | 520, 846, 1198, 1615, 1744, 1851 |
| DpnI | GATC | 7 cut(s) | 162, 411, 2238, 2670, 2718, 2751, 2913 |
| DpnII | GATC | 7 cut(s) | 160, 409, 2236, 2668, 2716, 2749, 2911 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1724 |
| DriI | GACNNNNNGTC | 1 cut(s) | 348 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1724 |
| EaeI | YGGCCR | 2 cut(s) | 1319, 2274 |
| Eam1104I | CTCTTC | 1 cut(s) | 2124 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 348 |
| EarI | CTCTTC | 1 cut(s) | 2124 |
| Eco130I | CCWWGG | 2 cut(s) | 608, 1133 |
| Eco147I | AGGCCT | 1 cut(s) | 1432 |
| Eco31I | GGTCTC | 1 cut(s) | 272 |
| Eco47I | GGWCC | 5 cut(s) | 659, 1130, 1726, 1935, 2282 |
| Eco57I | CTGAAG | 3 cut(s) | 338, 1411, 1887 |
| Eco72I | CACGTG | 1 cut(s) | 1292 |
| Eco81I | CCTNAGG | 1 cut(s) | 1851 |
| EcoO109I | RGGNCCY | 1 cut(s) | 659 |
| EcoRII | CCWGG | 2 cut(s) | 655, 670 |
| EcoT14I | CCWWGG | 2 cut(s) | 608, 1133 |
| EcoT22I | ATGCAT | 2 cut(s) | 1212, 2782 |
| ErhI | CCWWGG | 2 cut(s) | 608, 1133 |
| Esp3I | CGTCTC | 1 cut(s) | 1093 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2498, 2530 |
| FaqI | GGGAC | 3 cut(s) | 645, 942, 2633 |
| FauNDI | CATATG | 5 cut(s) | 748, 820, 1226, 1750, 2043 |
| FblI | GTMKAC | 3 cut(s) | 1052, 1846, 2115 |
| Fnu4HI | GCNGC | 5 cut(s) | 741, 786, 967, 1538, 1758 |
| FokI | GGATG | 8 cut(s) | 423, 743, 996, 1124, 1317, 1408, 2173, 2807 |
| Fsp4HI | GCNGC | 5 cut(s) | 741, 786, 967, 1538, 1758 |
| FspBI | CTAG | 2 cut(s) | 20, 1688 |
| GlaI | GCGC | 1 cut(s) | 26 |
| GluI | GCNGC | 5 cut(s) | 741, 786, 967, 1538, 1758 |
| GsuI | CTGGAG | 2 cut(s) | 654, 1350 |
| HaeIII | GGCC | 8 cut(s) | 577, 1321, 1432, 1497, 1770, 1795, 1889, 2276 |
| HapII | CCGG | 4 cut(s) | 815, 1347, 1933, 2096 |
| HgaI | GACGC | 3 cut(s) | 338, 347, 1456 |
| HhaI | GCGC | 1 cut(s) | 27 |
| Hin6I | GCGC | 1 cut(s) | 25 |
| HinP1I | GCGC | 1 cut(s) | 25 |
| HincII | GTYRAC | 1 cut(s) | 1847 |
| HindII | GTYRAC | 1 cut(s) | 1847 |
| HinfI | GANTC | 8 cut(s) | 54, 446, 652, 1640, 1919, 2180, 2826, 2918 |
| HpaII | CCGG | 4 cut(s) | 815, 1347, 1933, 2096 |
| HphI | GGTGA | 4 cut(s) | 125, 441, 887, 2912 |
| Hpy166II | GTNNAC | 8 cut(s) | 595, 1053, 1624, 1777, 1847, 2116, 2254, 2593 |
| Hpy188I | TCNGA | 3 cut(s) | 61, 1098, 2614 |
| Hpy8I | GTNNAC | 8 cut(s) | 595, 1053, 1624, 1777, 1847, 2116, 2254, 2593 |
| Hpy99I | CGWCG | 2 cut(s) | 939, 1557 |
| HpyAV | CCTTC | 6 cut(s) | 1168, 1435, 1716, 1862, 2130, 2215 |
| HpyCH4III | ACNGT | 9 cut(s) | 131, 569, 592, 1062, 1442, 2248, 2282, 2378, 2833 |
| HpyCH4IV | ACGT | 3 cut(s) | 1102, 1291, 2691 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 355, 1327, 1534, 1754, 1763, 1886, 2642 |
| HpyF3I | CTNAG | 6 cut(s) | 520, 846, 1198, 1615, 1744, 1851 |
| HpySE526I | ACGT | 3 cut(s) | 1102, 1291, 2691 |
| HspAI | GCGC | 1 cut(s) | 25 |
| Kpn2I | TCCGGA | 1 cut(s) | 2095 |
| Kzo9I | GATC | 7 cut(s) | 160, 409, 2236, 2668, 2716, 2749, 2911 |
| LmnI | GCTCC | 3 cut(s) | 673, 703, 737 |
| Lsp1109I | GCAGC | 4 cut(s) | 727, 978, 1524, 1744 |
| MaeI | CTAG | 2 cut(s) | 20, 1688 |
| MaeII | ACGT | 3 cut(s) | 1102, 1291, 2691 |
| MaeIII | GTNAC | 3 cut(s) | 340, 1835, 1924 |
| MalI | GATC | 7 cut(s) | 162, 411, 2238, 2670, 2718, 2751, 2913 |
| MboI | GATC | 7 cut(s) | 160, 409, 2236, 2668, 2716, 2749, 2911 |
| MboII | GAAGA | 8 cut(s) | 299, 344, 438, 935, 1553, 1928, 2141, 2154 |
| MfeI | CAATTG | 4 cut(s) | 1160, 1652, 1761, 2290 |
| MflI | RGATCY | 2 cut(s) | 2236, 2668 |
| MlsI | TGGCCA | 2 cut(s) | 1321, 2276 |
| MluNI | TGGCCA | 2 cut(s) | 1321, 2276 |
| MlyI | GAGTC | 1 cut(s) | 1649 |
| MmeI | TCCRAC | 1 cut(s) | 715 |
| Mox20I | TGGCCA | 2 cut(s) | 1321, 2276 |
| Mph1103I | ATGCAT | 2 cut(s) | 1212, 2782 |
| MroI | TCCGGA | 1 cut(s) | 2095 |
| MroXI | GAANNNNTTC | 2 cut(s) | 310, 914 |
| MscI | TGGCCA | 2 cut(s) | 1321, 2276 |
| MslI | CAYNNNNRTG | 7 cut(s) | 252, 686, 793, 873, 1617, 1971, 2076 |
| Msp20I | TGGCCA | 2 cut(s) | 1321, 2276 |
| MspCI | CTTAAG | 1 cut(s) | 1820 |
| MspI | CCGG | 4 cut(s) | 815, 1347, 1933, 2096 |
| MspR9I | CCNGG | 2 cut(s) | 657, 672 |
| MunI | CAATTG | 4 cut(s) | 1160, 1652, 1761, 2290 |
| MvaI | CCWGG | 2 cut(s) | 657, 672 |
| MvnI | CGCG | 2 cut(s) | 349, 2067 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 355, 1327, 1534, 1754, 1763, 1886, 2642 |
| NcoI | CCATGG | 1 cut(s) | 608 |
| NdeI | CATATG | 5 cut(s) | 748, 820, 1226, 1750, 2043 |
| NdeII | GATC | 7 cut(s) | 160, 409, 2236, 2668, 2716, 2749, 2911 |
| NlaIV | GGNNCC | 4 cut(s) | 661, 699, 962, 2238 |
| NmuCI | GTSAC | 1 cut(s) | 340 |
| NsiI | ATGCAT | 2 cut(s) | 1212, 2782 |
| NspI | RCATGY | 2 cut(s) | 404, 637 |
| NspV | TTCGAA | 2 cut(s) | 1783, 2338 |
| OliI | CACNNNNGTG | 1 cut(s) | 1617 |
| PaeI | GCATGC | 1 cut(s) | 404 |
| PagI | TCATGA | 2 cut(s) | 1507, 2921 |
| PaqCI | CACCTGC | 1 cut(s) | 460 |
| PceI | AGGCCT | 1 cut(s) | 1432 |
| PdmI | GAANNNNTTC | 2 cut(s) | 310, 914 |
| PfeI | GAWTC | 7 cut(s) | 54, 446, 652, 1919, 2180, 2826, 2918 |
| PflFI | GACNNNGTC | 2 cut(s) | 94, 933 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1025, 2441 |
| PkrI | GCNGC | 5 cut(s) | 742, 787, 968, 1539, 1759 |
| PleI | GAGTC | 1 cut(s) | 1648 |
| PmaCI | CACGTG | 1 cut(s) | 1292 |
| PmlI | CACGTG | 1 cut(s) | 1292 |
| PpsI | GAGTC | 1 cut(s) | 1648 |
| Ppu21I | YACGTR | 2 cut(s) | 1292, 2692 |
| PpuMI | RGGWCCY | 1 cut(s) | 659 |
| PshBI | ATTAAT | 2 cut(s) | 2322, 2343 |
| PsiI | TTATAA | 1 cut(s) | 2052 |
| Psp5II | RGGWCCY | 1 cut(s) | 659 |
| Psp6I | CCWGG | 2 cut(s) | 655, 670 |
| PspCI | CACGTG | 1 cut(s) | 1292 |
| PspGI | CCWGG | 2 cut(s) | 655, 670 |
| PspN4I | GGNNCC | 4 cut(s) | 661, 699, 962, 2238 |
| PspPI | GGNCC | 7 cut(s) | 576, 659, 1130, 1726, 1769, 1935, 2282 |
| PspPPI | RGGWCCY | 1 cut(s) | 659 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 541, 573 |
| PsuI | RGATCY | 2 cut(s) | 2236, 2668 |
| PsyI | GACNNNGTC | 2 cut(s) | 94, 933 |
| RsaI | GTAC | 7 cut(s) | 259, 269, 379, 844, 1874, 1910, 2070 |
| RsaNI | GTAC | 7 cut(s) | 258, 268, 378, 843, 1873, 1909, 2069 |
| RseI | CAYNNNNRTG | 7 cut(s) | 252, 686, 793, 873, 1617, 1971, 2076 |
| SalI | GTCGAC | 1 cut(s) | 1845 |
| SatI | GCNGC | 5 cut(s) | 741, 786, 967, 1538, 1758 |
| Sau3AI | GATC | 7 cut(s) | 160, 409, 2236, 2668, 2716, 2749, 2911 |
| Sau96I | GGNCC | 7 cut(s) | 576, 659, 1130, 1726, 1769, 1935, 2282 |
| ScaI | AGTACT | 1 cut(s) | 844 |
| SchI | GAGTC | 1 cut(s) | 1649 |
| ScrFI | CCNGG | 2 cut(s) | 657, 672 |
| SfcI | CTRYAG | 3 cut(s) | 1058, 1797, 2553 |
| SfuI | TTCGAA | 2 cut(s) | 1783, 2338 |
| SinI | GGWCC | 5 cut(s) | 659, 1130, 1726, 1935, 2282 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 252, 686, 793, 873, 1617, 1971, 2076 |
| SmlI | CTYRAG | 1 cut(s) | 1820 |
| SmoI | CTYRAG | 1 cut(s) | 1820 |
| SphI | GCATGC | 1 cut(s) | 404 |
| SseBI | AGGCCT | 1 cut(s) | 1432 |
| SsiI | CCGC | 4 cut(s) | 347, 785, 964, 1961 |
| SspI | AATATT | 1 cut(s) | 2005 |
| SspMI | CTAG | 2 cut(s) | 20, 1688 |
| StuI | AGGCCT | 1 cut(s) | 1432 |
| StyD4I | CCNGG | 2 cut(s) | 655, 670 |
| StyI | CCWWGG | 2 cut(s) | 608, 1133 |
| TaaI | ACNGT | 9 cut(s) | 131, 569, 592, 1062, 1442, 2248, 2282, 2378, 2833 |
| TaiI | ACGT | 3 cut(s) | 1105, 1294, 2694 |
| TatI | WGTACW | 2 cut(s) | 842, 1908 |
| TauI | GCSGC | 1 cut(s) | 788 |
| TfiI | GAWTC | 7 cut(s) | 54, 446, 652, 1919, 2180, 2826, 2918 |
| TscAI | CASTG | 2 cut(s) | 81, 2383 |
| TseFI | GTSAC | 1 cut(s) | 340 |
| TseI | GCWGC | 4 cut(s) | 740, 966, 1537, 1757 |
| Tsp45I | GTSAC | 1 cut(s) | 340 |
| TspDTI | ATGAA | 9 cut(s) | 17, 192, 635, 726, 1407, 1590, 1767, 2586, 2910 |
| TspGWI | ACGGA | 2 cut(s) | 1143, 2381 |
| TspRI | CASTG | 2 cut(s) | 81, 2383 |
| Tth111I | GACNNNGTC | 2 cut(s) | 94, 933 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1025, 2441 |
| Vha464I | CTTAAG | 1 cut(s) | 1820 |
| VpaK11BI | GGWCC | 5 cut(s) | 659, 1130, 1726, 1935, 2282 |
| VspI | ATTAAT | 2 cut(s) | 2322, 2343 |
| XceI | RCATGY | 2 cut(s) | 404, 637 |
| XmiI | GTMKAC | 3 cut(s) | 1052, 1846, 2115 |
| XmnI | GAANNNNTTC | 2 cut(s) | 310, 914 |
| XspI | CTAG | 2 cut(s) | 20, 1688 |
| ZrmI | AGTACT | 1 cut(s) | 844 |
| Zsp2I | ATGCAT | 2 cut(s) | 1212, 2782 |