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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 263 |
| AciI | CCGC | 4 cut(s) | 261, 263, 370, 536 |
| AclWI | GGATC | 3 cut(s) | 87, 195, 274 |
| AcsI | RAATTY | 1 cut(s) | 416 |
| AfaI | GTAC | 2 cut(s) | 473, 489 |
| AgsI | TTSAA | 5 cut(s) | 308, 353, 402, 511, 629 |
| AjnI | CCWGG | 3 cut(s) | 106, 214, 457 |
| Alw26I | GTCTC | 1 cut(s) | 306 |
| AlwI | GGATC | 3 cut(s) | 87, 195, 274 |
| ApoI | RAATTY | 1 cut(s) | 416 |
| AsuHPI | GGTGA | 1 cut(s) | 392 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 584, 617 |
| BciT130I | CCWGG | 3 cut(s) | 108, 216, 459 |
| BciVI | GTATCC | 1 cut(s) | 613 |
| BcoDI | GTCTC | 1 cut(s) | 306 |
| BfaI | CTAG | 2 cut(s) | 5, 66 |
| BfuI | GTATCC | 1 cut(s) | 613 |
| BisI | GCNGC | 1 cut(s) | 537 |
| BlsI | GCNGC | 1 cut(s) | 538 |
| Bme1390I | CCNGG | 3 cut(s) | 108, 216, 459 |
| BmiI | GGNNCC | 1 cut(s) | 14 |
| BmrFI | CCNGG | 3 cut(s) | 108, 216, 459 |
| BmsI | GCATC | 3 cut(s) | 427, 523, 603 |
| BsaJI | CCNNGG | 4 cut(s) | 106, 214, 261, 457 |
| Bse1I | ACTGG | 2 cut(s) | 554, 586 |
| BseBI | CCWGG | 3 cut(s) | 108, 216, 459 |
| BseDI | CCNNGG | 4 cut(s) | 106, 214, 261, 457 |
| BseGI | GGATG | 2 cut(s) | 394, 442 |
| BseNI | ACTGG | 2 cut(s) | 554, 586 |
| BseRI | GAGGAG | 1 cut(s) | 407 |
| Bsh1236I | CGCG | 1 cut(s) | 263 |
| BsmAI | GTCTC | 1 cut(s) | 306 |
| Bsp143I | GATC | 5 cut(s) | 7, 79, 158, 187, 266 |
| BspACI | CCGC | 4 cut(s) | 261, 263, 370, 536 |
| BspFNI | CGCG | 1 cut(s) | 263 |
| BspLI | GGNNCC | 1 cut(s) | 14 |
| BspPI | GGATC | 3 cut(s) | 87, 195, 274 |
| BsrI | ACTGG | 2 cut(s) | 554, 586 |
| BssECI | CCNNGG | 4 cut(s) | 106, 214, 261, 457 |
| BssMI | GATC | 5 cut(s) | 7, 79, 158, 187, 266 |
| Bst2UI | CCWGG | 3 cut(s) | 108, 216, 459 |
| Bst4CI | ACNGT | 1 cut(s) | 41 |
| BstDSI | CCRYGG | 1 cut(s) | 261 |
| BstF5I | GGATG | 2 cut(s) | 394, 442 |
| BstFNI | CGCG | 1 cut(s) | 263 |
| BstKTI | GATC | 5 cut(s) | 10, 82, 161, 190, 269 |
| BstMAI | GTCTC | 1 cut(s) | 306 |
| BstMBI | GATC | 5 cut(s) | 7, 79, 158, 187, 266 |
| BstNI | CCWGG | 3 cut(s) | 108, 216, 459 |
| BstSCI | CCNGG | 3 cut(s) | 106, 214, 457 |
| BstUI | CGCG | 1 cut(s) | 263 |
| BsuI | GTATCC | 1 cut(s) | 613 |
| BtgI | CCRYGG | 1 cut(s) | 261 |
| BtgZI | GCGATG | 1 cut(s) | 378 |
| BtsCI | GGATG | 2 cut(s) | 394, 442 |
| Cfr42I | CCGCGG | 1 cut(s) | 264 |
| Csp6I | GTAC | 2 cut(s) | 472, 488 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 5, 40 |
| CviAII | CATG | 2 cut(s) | 131, 521 |
| CviJI | RGCY | 3 cut(s) | 499, 515, 539 |
| CviKI_1 | RGCY | 3 cut(s) | 499, 515, 539 |
| CviQI | GTAC | 2 cut(s) | 472, 488 |
| DpnI | GATC | 5 cut(s) | 9, 81, 160, 189, 268 |
| DpnII | GATC | 5 cut(s) | 7, 79, 158, 187, 266 |
| EcoRI | GAATTC | 1 cut(s) | 416 |
| EcoRII | CCWGG | 3 cut(s) | 106, 214, 457 |
| FaeI | CATG | 2 cut(s) | 134, 524 |
| FatI | CATG | 2 cut(s) | 130, 520 |
| FauI | CCCGC | 1 cut(s) | 256 |
| Fnu4HI | GCNGC | 1 cut(s) | 537 |
| FokI | GGATG | 2 cut(s) | 401, 449 |
| Fsp4HI | GCNGC | 1 cut(s) | 537 |
| FspBI | CTAG | 2 cut(s) | 5, 66 |
| GluI | GCNGC | 1 cut(s) | 537 |
| Hin1II | CATG | 2 cut(s) | 134, 524 |
| HinfI | GANTC | 5 cut(s) | 149, 257, 299, 308, 314 |
| HphI | GGTGA | 1 cut(s) | 392 |
| Hpy166II | GTNNAC | 1 cut(s) | 474 |
| Hpy188I | TCNGA | 6 cut(s) | 12, 163, 271, 313, 547, 568 |
| Hpy188III | TCNNGA | 1 cut(s) | 305 |
| Hpy8I | GTNNAC | 1 cut(s) | 474 |
| HpyAV | CCTTC | 1 cut(s) | 371 |
| HpyCH4III | ACNGT | 1 cut(s) | 41 |
| HpyCH4IV | ACGT | 1 cut(s) | 599 |
| HpyCH4V | TGCA | 1 cut(s) | 33 |
| HpySE526I | ACGT | 1 cut(s) | 599 |
| Hsp92II | CATG | 2 cut(s) | 134, 524 |
| KspI | CCGCGG | 1 cut(s) | 264 |
| Kzo9I | GATC | 5 cut(s) | 7, 79, 158, 187, 266 |
| LweI | GCATC | 3 cut(s) | 427, 523, 603 |
| MaeI | CTAG | 2 cut(s) | 5, 66 |
| MaeII | ACGT | 1 cut(s) | 599 |
| MalI | GATC | 5 cut(s) | 9, 81, 160, 189, 268 |
| MboI | GATC | 5 cut(s) | 7, 79, 158, 187, 266 |
| MboII | GAAGA | 1 cut(s) | 566 |
| MluCI | AATT | 3 cut(s) | 353, 416, 608 |
| MlyI | GAGTC | 3 cut(s) | 158, 266, 308 |
| MmeI | TCCRAC | 1 cut(s) | 354 |
| MnlI | CCTC | 8 cut(s) | 130, 178, 238, 286, 379, 385, 427, 489 |
| MseI | TTAA | 2 cut(s) | 321, 606 |
| MslI | CAYNNNNRTG | 1 cut(s) | 479 |
| MspA1I | CMGCKG | 1 cut(s) | 263 |
| MspR9I | CCNGG | 3 cut(s) | 108, 216, 459 |
| MvaI | CCWGG | 3 cut(s) | 108, 216, 459 |
| MvnI | CGCG | 1 cut(s) | 263 |
| NdeII | GATC | 5 cut(s) | 7, 79, 158, 187, 266 |
| NlaIII | CATG | 2 cut(s) | 134, 524 |
| NlaIV | GGNNCC | 1 cut(s) | 14 |
| PfeI | GAWTC | 2 cut(s) | 308, 314 |
| PkrI | GCNGC | 1 cut(s) | 538 |
| PleI | GAGTC | 3 cut(s) | 157, 265, 307 |
| PpsI | GAGTC | 3 cut(s) | 157, 265, 307 |
| Psp6I | CCWGG | 3 cut(s) | 106, 214, 457 |
| PspGI | CCWGG | 3 cut(s) | 106, 214, 457 |
| PspN4I | GGNNCC | 1 cut(s) | 14 |
| RsaI | GTAC | 2 cut(s) | 473, 489 |
| RsaNI | GTAC | 2 cut(s) | 472, 488 |
| RseI | CAYNNNNRTG | 1 cut(s) | 479 |
| SacII | CCGCGG | 1 cut(s) | 264 |
| SaqAI | TTAA | 2 cut(s) | 321, 606 |
| SatI | GCNGC | 1 cut(s) | 537 |
| Sau3AI | GATC | 5 cut(s) | 7, 79, 158, 187, 266 |
| SchI | GAGTC | 3 cut(s) | 158, 266, 308 |
| ScrFI | CCNGG | 3 cut(s) | 108, 216, 459 |
| SetI | ASST | 7 cut(s) | 141, 249, 297, 382, 473, 598, 602 |
| SfaNI | GCATC | 3 cut(s) | 427, 523, 603 |
| Sfr303I | CCGCGG | 1 cut(s) | 264 |
| SgrBI | CCGCGG | 1 cut(s) | 264 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 479 |
| Sse9I | AATT | 3 cut(s) | 353, 416, 608 |
| SsiI | CCGC | 4 cut(s) | 261, 263, 370, 536 |
| SspI | AATATT | 1 cut(s) | 56 |
| SspMI | CTAG | 2 cut(s) | 5, 66 |
| StyD4I | CCNGG | 3 cut(s) | 106, 214, 457 |
| TaaI | ACNGT | 1 cut(s) | 41 |
| TaiI | ACGT | 1 cut(s) | 602 |
| TasI | AATT | 3 cut(s) | 353, 416, 608 |
| TatI | WGTACW | 1 cut(s) | 487 |
| TauI | GCSGC | 1 cut(s) | 539 |
| TfiI | GAWTC | 2 cut(s) | 308, 314 |
| Tru1I | TTAA | 2 cut(s) | 321, 606 |
| Tru9I | TTAA | 2 cut(s) | 321, 606 |
| TspDTI | ATGAA | 2 cut(s) | 429, 497 |
| XapI | RAATTY | 1 cut(s) | 416 |
| XspI | CTAG | 2 cut(s) | 5, 66 |