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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 320 |
| AccII | CGCG | 1 cut(s) | 258 |
| AccIII | TCCGGA | 1 cut(s) | 445 |
| AclWI | GGATC | 1 cut(s) | 758 |
| AcoI | YGGCCR | 1 cut(s) | 759 |
| AcsI | RAATTY | 1 cut(s) | 242 |
| AcuI | CTGAAG | 2 cut(s) | 249, 288 |
| AfaI | GTAC | 3 cut(s) | 140, 155, 453 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 199, 293, 329, 595, 873, 874 |
| AgsI | TTSAA | 8 cut(s) | 38, 149, 421, 493, 689, 742, 845, 919 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 901 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 261, 293 |
| AluBI | AGCT | 6 cut(s) | 34, 109, 370, 557, 892, 924 |
| AluI | AGCT | 6 cut(s) | 34, 109, 370, 557, 892, 924 |
| AlwI | GGATC | 1 cut(s) | 758 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 266 |
| Ama87I | CYCGRG | 1 cut(s) | 552 |
| Aor13HI | TCCGGA | 1 cut(s) | 445 |
| AoxI | GGCC | 1 cut(s) | 759 |
| ApeKI | GCWGC | 1 cut(s) | 315 |
| ApoI | RAATTY | 1 cut(s) | 242 |
| AspLEI | GCGC | 1 cut(s) | 260 |
| AspS9I | GGNCC | 2 cut(s) | 116, 437 |
| AsuHPI | GGTGA | 1 cut(s) | 631 |
| AsuII | TTCGAA | 1 cut(s) | 909 |
| AsuNHI | GCTAGC | 1 cut(s) | 370 |
| AvaI | CYCGRG | 1 cut(s) | 552 |
| AvaII | GGWCC | 2 cut(s) | 116, 437 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 327, 360 |
| BbsI | GAAGAC | 1 cut(s) | 15 |
| BbvI | GCAGC | 1 cut(s) | 327 |
| BccI | CCATC | 5 cut(s) | 201, 295, 428, 634, 866 |
| BceAI | ACGGC | 1 cut(s) | 221 |
| BfaI | CTAG | 2 cut(s) | 371, 570 |
| BfmI | CTRYAG | 1 cut(s) | 313 |
| BfuAI | ACCTGC | 1 cut(s) | 320 |
| BisI | GCNGC | 1 cut(s) | 316 |
| BlsI | GCNGC | 1 cut(s) | 317 |
| Bme18I | GGWCC | 2 cut(s) | 116, 437 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 901 |
| BmeT110I | CYCGRG | 1 cut(s) | 552 |
| BmgT120I | GGNCC | 2 cut(s) | 116, 437 |
| BmsI | GCATC | 2 cut(s) | 291, 815 |
| BmtI | GCTAGC | 1 cut(s) | 374 |
| BpiI | GAAGAC | 1 cut(s) | 15 |
| Bpu14I | TTCGAA | 1 cut(s) | 909 |
| BsaJI | CCNNGG | 3 cut(s) | 237, 498, 696 |
| BsaWI | WCCGGW | 1 cut(s) | 445 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 199, 293, 329, 595, 873, 874 |
| Bse1I | ACTGG | 2 cut(s) | 119, 600 |
| Bse3DI | GCAATG | 1 cut(s) | 207 |
| BseAI | TCCGGA | 1 cut(s) | 445 |
| BseDI | CCNNGG | 3 cut(s) | 237, 498, 696 |
| BseGI | GGATG | 7 cut(s) | 141, 193, 282, 454, 604, 790, 883 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 199, 293, 329, 595, 873, 874 |
| BseMI | GCAATG | 1 cut(s) | 207 |
| BseMII | CTCAG | 2 cut(s) | 204, 264 |
| BseNI | ACTGG | 2 cut(s) | 119, 600 |
| BseXI | GCAGC | 1 cut(s) | 327 |
| Bsh1236I | CGCG | 1 cut(s) | 258 |
| BshFI | GGCC | 1 cut(s) | 761 |
| BsiHKCI | CYCGRG | 1 cut(s) | 552 |
| BsiSI | CCGG | 1 cut(s) | 446 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 199, 293, 329, 595, 873, 874 |
| BsnI | GGCC | 1 cut(s) | 761 |
| BsoBI | CYCGRG | 1 cut(s) | 552 |
| Bsp119I | TTCGAA | 1 cut(s) | 909 |
| Bsp13I | TCCGGA | 1 cut(s) | 445 |
| Bsp143I | GATC | 1 cut(s) | 763 |
| BspANI | GGCC | 1 cut(s) | 761 |
| BspCNI | CTCAG | 2 cut(s) | 205, 263 |
| BspEI | TCCGGA | 1 cut(s) | 445 |
| BspFNI | CGCG | 1 cut(s) | 258 |
| BspHI | TCATGA | 1 cut(s) | 69 |
| BspMAI | CTGCAG | 1 cut(s) | 317 |
| BspMI | ACCTGC | 1 cut(s) | 320 |
| BspOI | GCTAGC | 1 cut(s) | 374 |
| BspPI | GGATC | 1 cut(s) | 758 |
| BspQI | GCTCTTC | 1 cut(s) | 882 |
| BspT104I | TTCGAA | 1 cut(s) | 909 |
| BsrDI | GCAATG | 1 cut(s) | 207 |
| BsrI | ACTGG | 2 cut(s) | 119, 600 |
| BssECI | CCNNGG | 3 cut(s) | 237, 498, 696 |
| BssMI | GATC | 1 cut(s) | 763 |
| BssT1I | CCWWGG | 2 cut(s) | 498, 696 |
| Bst4CI | ACNGT | 4 cut(s) | 25, 85, 277, 654 |
| Bst6I | CTCTTC | 1 cut(s) | 882 |
| BstBI | TTCGAA | 1 cut(s) | 909 |
| BstC8I | GCNNGC | 1 cut(s) | 372 |
| BstDEI | CTNAG | 2 cut(s) | 213, 250 |
| BstDSI | CCRYGG | 1 cut(s) | 237 |
| BstF5I | GGATG | 7 cut(s) | 141, 193, 282, 454, 604, 790, 883 |
| BstFNI | CGCG | 1 cut(s) | 258 |
| BstHHI | GCGC | 1 cut(s) | 260 |
| BstKTI | GATC | 1 cut(s) | 766 |
| BstMBI | GATC | 1 cut(s) | 763 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 233, 255 |
| BstSFI | CTRYAG | 1 cut(s) | 313 |
| BstUI | CGCG | 1 cut(s) | 258 |
| BstV1I | GCAGC | 1 cut(s) | 327 |
| BstV2I | GAAGAC | 1 cut(s) | 15 |
| BsuRI | GGCC | 1 cut(s) | 761 |
| BtgI | CCRYGG | 1 cut(s) | 237 |
| BtsCI | GGATG | 7 cut(s) | 141, 193, 282, 454, 604, 790, 883 |
| BveI | ACCTGC | 1 cut(s) | 320 |
| Cac8I | GCNNGC | 1 cut(s) | 372 |
| CaiI | CAGNNNCTG | 1 cut(s) | 266 |
| CciI | TCATGA | 1 cut(s) | 69 |
| CfoI | GCGC | 1 cut(s) | 260 |
| Cfr13I | GGNCC | 2 cut(s) | 116, 437 |
| Csp6I | GTAC | 3 cut(s) | 139, 154, 452 |
| CviAII | CATG | 4 cut(s) | 70, 157, 472, 755 |
| CviJI | RGCY | 9 cut(s) | 34, 109, 174, 236, 370, 557, 761, 892, 924 |
| CviKI_1 | RGCY | 9 cut(s) | 34, 109, 174, 236, 370, 557, 761, 892, 924 |
| CviQI | GTAC | 3 cut(s) | 139, 154, 452 |
| DdeI | CTNAG | 2 cut(s) | 213, 250 |
| DpnI | GATC | 1 cut(s) | 765 |
| DpnII | GATC | 1 cut(s) | 763 |
| DriI | GACNNNNNGTC | 1 cut(s) | 901 |
| EaeI | YGGCCR | 1 cut(s) | 759 |
| Eam1104I | CTCTTC | 1 cut(s) | 882 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 901 |
| EarI | CTCTTC | 1 cut(s) | 882 |
| Eco130I | CCWWGG | 2 cut(s) | 498, 696 |
| Eco47I | GGWCC | 2 cut(s) | 116, 437 |
| Eco57I | CTGAAG | 2 cut(s) | 249, 288 |
| Eco88I | CYCGRG | 1 cut(s) | 552 |
| EcoT14I | CCWWGG | 2 cut(s) | 498, 696 |
| EcoT22I | ATGCAT | 1 cut(s) | 808 |
| ErhI | CCWWGG | 2 cut(s) | 498, 696 |
| FaeI | CATG | 4 cut(s) | 73, 160, 475, 758 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 93, 125, 876, 908 |
| FatI | CATG | 4 cut(s) | 69, 156, 471, 754 |
| Fnu4HI | GCNGC | 1 cut(s) | 316 |
| FokI | GGATG | 7 cut(s) | 148, 180, 269, 461, 611, 797, 890 |
| Fsp4HI | GCNGC | 1 cut(s) | 316 |
| FspBI | CTAG | 2 cut(s) | 371, 570 |
| GlaI | GCGC | 1 cut(s) | 259 |
| GluI | GCNGC | 1 cut(s) | 316 |
| HaeIII | GGCC | 1 cut(s) | 761 |
| HapII | CCGG | 1 cut(s) | 446 |
| HhaI | GCGC | 1 cut(s) | 260 |
| Hin1II | CATG | 4 cut(s) | 73, 160, 475, 758 |
| Hin6I | GCGC | 1 cut(s) | 258 |
| HinP1I | GCGC | 1 cut(s) | 258 |
| HinfI | GANTC | 4 cut(s) | 73, 215, 442, 660 |
| HpaII | CCGG | 1 cut(s) | 446 |
| HphI | GGTGA | 1 cut(s) | 631 |
| Hpy166II | GTNNAC | 3 cut(s) | 116, 726, 736 |
| Hpy188I | TCNGA | 7 cut(s) | 21, 98, 253, 268, 811, 853, 930 |
| Hpy188III | TCNNGA | 4 cut(s) | 70, 197, 446, 818 |
| Hpy8I | GTNNAC | 3 cut(s) | 116, 726, 736 |
| HpyAV | CCTTC | 5 cut(s) | 63, 351, 571, 905, 930 |
| HpyCH4III | ACNGT | 4 cut(s) | 25, 85, 277, 654 |
| HpyCH4IV | ACGT | 3 cut(s) | 505, 728, 902 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 207, 315, 431, 526, 607, 806 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 233, 255 |
| HpyF3I | CTNAG | 2 cut(s) | 213, 250 |
| HpySE526I | ACGT | 3 cut(s) | 505, 728, 902 |
| Hsp92II | CATG | 4 cut(s) | 73, 160, 475, 758 |
| HspAI | GCGC | 1 cut(s) | 258 |
| Kpn2I | TCCGGA | 1 cut(s) | 445 |
| Kzo9I | GATC | 1 cut(s) | 763 |
| LguI | GCTCTTC | 1 cut(s) | 882 |
| LmnI | GCTCC | 1 cut(s) | 367 |
| LpnPI | CCDG | 7 cut(s) | 132, 210, 315, 325, 459, 581, 678 |
| Lsp1109I | GCAGC | 1 cut(s) | 327 |
| LweI | GCATC | 2 cut(s) | 291, 815 |
| MaeI | CTAG | 2 cut(s) | 371, 570 |
| MaeII | ACGT | 3 cut(s) | 505, 728, 902 |
| MaeIII | GTNAC | 3 cut(s) | 307, 387, 467 |
| MalI | GATC | 1 cut(s) | 765 |
| MboI | GATC | 1 cut(s) | 763 |
| MboII | GAAGA | 6 cut(s) | 20, 242, 281, 893, 896, 899 |
| MluCI | AATT | 3 cut(s) | 242, 608, 630 |
| MlyI | GAGTC | 1 cut(s) | 224 |
| MmeI | TCCRAC | 1 cut(s) | 345 |
| MnlI | CCTC | 4 cut(s) | 176, 193, 394, 825 |
| Mph1103I | ATGCAT | 1 cut(s) | 808 |
| MroI | TCCGGA | 1 cut(s) | 445 |
| MseI | TTAA | 2 cut(s) | 672, 952 |
| MslI | CAYNNNNRTG | 2 cut(s) | 379, 381 |
| MspI | CCGG | 1 cut(s) | 446 |
| MvnI | CGCG | 1 cut(s) | 258 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 233, 255 |
| NdeII | GATC | 1 cut(s) | 763 |
| NheI | GCTAGC | 1 cut(s) | 370 |
| NlaIII | CATG | 4 cut(s) | 73, 160, 475, 758 |
| NsiI | ATGCAT | 1 cut(s) | 808 |
| NspV | TTCGAA | 1 cut(s) | 909 |
| PagI | TCATGA | 1 cut(s) | 69 |
| PciSI | GCTCTTC | 1 cut(s) | 882 |
| PfeI | GAWTC | 3 cut(s) | 73, 442, 660 |
| PkrI | GCNGC | 1 cut(s) | 317 |
| PleI | GAGTC | 1 cut(s) | 223 |
| PpsI | GAGTC | 1 cut(s) | 223 |
| PspPI | GGNCC | 2 cut(s) | 116, 437 |
| PstI | CTGCAG | 1 cut(s) | 317 |
| PstNI | CAGNNNCTG | 1 cut(s) | 266 |
| RsaI | GTAC | 3 cut(s) | 140, 155, 453 |
| RsaNI | GTAC | 3 cut(s) | 139, 154, 452 |
| RseI | CAYNNNNRTG | 2 cut(s) | 379, 381 |
| SapI | GCTCTTC | 1 cut(s) | 882 |
| SaqAI | TTAA | 2 cut(s) | 672, 952 |
| SatI | GCNGC | 1 cut(s) | 316 |
| Sau3AI | GATC | 1 cut(s) | 763 |
| Sau96I | GGNCC | 2 cut(s) | 116, 437 |
| SchI | GAGTC | 1 cut(s) | 224 |
| SfaNI | GCATC | 2 cut(s) | 291, 815 |
| SfcI | CTRYAG | 1 cut(s) | 313 |
| SfuI | TTCGAA | 1 cut(s) | 909 |
| SinI | GGWCC | 2 cut(s) | 116, 437 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 379, 381 |
| Sse9I | AATT | 3 cut(s) | 242, 608, 630 |
| SspMI | CTAG | 2 cut(s) | 371, 570 |
| StyI | CCWWGG | 2 cut(s) | 498, 696 |
| TaaI | ACNGT | 4 cut(s) | 25, 85, 277, 654 |
| TaiI | ACGT | 3 cut(s) | 508, 731, 905 |
| TaqI | TCGA | 3 cut(s) | 63, 187, 909 |
| TaqII | GACCGA | 1 cut(s) | 454 |
| TasI | AATT | 3 cut(s) | 242, 608, 630 |
| TfiI | GAWTC | 3 cut(s) | 73, 442, 660 |
| Tru1I | TTAA | 2 cut(s) | 672, 952 |
| Tru9I | TTAA | 2 cut(s) | 672, 952 |
| TseI | GCWGC | 1 cut(s) | 315 |
| TspDTI | ATGAA | 5 cut(s) | 65, 77, 173, 476, 894 |
| VpaK11BI | GGWCC | 2 cut(s) | 116, 437 |
| XapI | RAATTY | 1 cut(s) | 242 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 420 |
| XspI | CTAG | 2 cut(s) | 371, 570 |
| Zsp2I | ATGCAT | 1 cut(s) | 808 |