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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 288 |
| AccB1I | GGYRCC | 1 cut(s) | 861 |
| AccI | GTMKAC | 2 cut(s) | 109, 726 |
| AciI | CCGC | 2 cut(s) | 549, 714 |
| AcsI | RAATTY | 1 cut(s) | 645 |
| AfaI | GTAC | 3 cut(s) | 252, 374, 858 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 476 |
| AgsI | TTSAA | 6 cut(s) | 49, 124, 217, 403, 516, 542 |
| AluBI | AGCT | 3 cut(s) | 43, 710, 794 |
| AluI | AGCT | 3 cut(s) | 43, 710, 794 |
| Alw26I | GTCTC | 1 cut(s) | 867 |
| Ama87I | CYCGRG | 1 cut(s) | 56 |
| ApeKI | GCWGC | 3 cut(s) | 77, 80, 137 |
| ApoI | RAATTY | 1 cut(s) | 645 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 176 |
| AspS9I | GGNCC | 1 cut(s) | 466 |
| AsuC2I | CCSGG | 3 cut(s) | 57, 58, 866 |
| AsuII | TTCGAA | 1 cut(s) | 434 |
| AsuNHI | GCTAGC | 1 cut(s) | 710 |
| AvaI | CYCGRG | 1 cut(s) | 56 |
| AvaII | GGWCC | 1 cut(s) | 466 |
| BaeGI | GKGCMC | 1 cut(s) | 866 |
| BanI | GGYRCC | 1 cut(s) | 861 |
| BbsI | GAAGAC | 1 cut(s) | 676 |
| BbvI | GCAGC | 3 cut(s) | 64, 67, 124 |
| BciVI | GTATCC | 2 cut(s) | 630, 669 |
| BclI | TGATCA | 1 cut(s) | 838 |
| BcnI | CCSGG | 3 cut(s) | 57, 58, 866 |
| BcoDI | GTCTC | 1 cut(s) | 867 |
| BfaI | CTAG | 3 cut(s) | 182, 585, 711 |
| BfuI | GTATCC | 2 cut(s) | 630, 669 |
| BisI | GCNGC | 3 cut(s) | 78, 81, 138 |
| BlsI | GCNGC | 3 cut(s) | 79, 82, 139 |
| Bme1390I | CCNGG | 3 cut(s) | 57, 58, 866 |
| Bme18I | GGWCC | 1 cut(s) | 466 |
| BmeT110I | CYCGRG | 1 cut(s) | 56 |
| BmgT120I | GGNCC | 1 cut(s) | 466 |
| BmiI | GGNNCC | 2 cut(s) | 468, 863 |
| BmrFI | CCNGG | 3 cut(s) | 57, 58, 866 |
| BmsI | GCATC | 1 cut(s) | 16 |
| BmtI | GCTAGC | 1 cut(s) | 714 |
| BpiI | GAAGAC | 1 cut(s) | 676 |
| Bpu14I | TTCGAA | 1 cut(s) | 434 |
| BpuMI | CCSGG | 3 cut(s) | 57, 58, 866 |
| Bsa29I | ATCGAT | 1 cut(s) | 426 |
| BsaJI | CCNNGG | 1 cut(s) | 56 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 315, 345 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 476 |
| Bse1I | ACTGG | 3 cut(s) | 230, 246, 365 |
| BseCI | ATCGAT | 1 cut(s) | 426 |
| BseDI | CCNNGG | 1 cut(s) | 56 |
| BseGI | GGATG | 2 cut(s) | 76, 242 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 476 |
| BseNI | ACTGG | 3 cut(s) | 230, 246, 365 |
| BseSI | GKGCMC | 1 cut(s) | 866 |
| BseXI | GCAGC | 3 cut(s) | 64, 67, 124 |
| BshNI | GGYRCC | 1 cut(s) | 861 |
| BshVI | ATCGAT | 1 cut(s) | 426 |
| BsiHKCI | CYCGRG | 1 cut(s) | 56 |
| BsiSI | CCGG | 2 cut(s) | 57, 866 |
| BslFI | GGGAC | 3 cut(s) | 161, 452, 536 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 476 |
| BsmAI | GTCTC | 1 cut(s) | 867 |
| BsmFI | GGGAC | 3 cut(s) | 161, 452, 536 |
| BsoBI | CYCGRG | 1 cut(s) | 56 |
| Bsp119I | TTCGAA | 1 cut(s) | 434 |
| Bsp1286I | GDGCHC | 1 cut(s) | 866 |
| Bsp143I | GATC | 3 cut(s) | 423, 533, 838 |
| BspACI | CCGC | 2 cut(s) | 549, 714 |
| BspDI | ATCGAT | 1 cut(s) | 426 |
| BspLI | GGNNCC | 2 cut(s) | 468, 863 |
| BspOI | GCTAGC | 1 cut(s) | 714 |
| BspT104I | TTCGAA | 1 cut(s) | 434 |
| BspT107I | GGYRCC | 1 cut(s) | 861 |
| BsrI | ACTGG | 3 cut(s) | 230, 246, 365 |
| BssECI | CCNNGG | 1 cut(s) | 56 |
| BssMI | GATC | 3 cut(s) | 423, 533, 838 |
| BssNAI | GTATAC | 1 cut(s) | 110 |
| Bst1107I | GTATAC | 1 cut(s) | 110 |
| Bst4CI | ACNGT | 3 cut(s) | 226, 632, 861 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 448 |
| BstBI | TTCGAA | 1 cut(s) | 434 |
| BstC8I | GCNNGC | 1 cut(s) | 712 |
| BstDEI | CTNAG | 2 cut(s) | 66, 790 |
| BstF5I | GGATG | 2 cut(s) | 76, 242 |
| BstKTI | GATC | 3 cut(s) | 426, 536, 841 |
| BstMAI | GTCTC | 1 cut(s) | 867 |
| BstMBI | GATC | 3 cut(s) | 423, 533, 838 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 448 |
| BstSCI | CCNGG | 3 cut(s) | 55, 56, 864 |
| BstSLI | GKGCMC | 1 cut(s) | 866 |
| BstV1I | GCAGC | 3 cut(s) | 64, 67, 124 |
| BstV2I | GAAGAC | 1 cut(s) | 676 |
| BstZ17I | GTATAC | 1 cut(s) | 110 |
| Bsu15I | ATCGAT | 1 cut(s) | 426 |
| BsuI | GTATCC | 2 cut(s) | 630, 669 |
| BsuTUI | ATCGAT | 1 cut(s) | 426 |
| BtsCI | GGATG | 2 cut(s) | 76, 242 |
| BtsIMutI | CAGTG | 1 cut(s) | 253 |
| Cac8I | GCNNGC | 1 cut(s) | 712 |
| Cfr13I | GGNCC | 1 cut(s) | 466 |
| Cfr9I | CCCGGG | 1 cut(s) | 56 |
| ClaI | ATCGAT | 1 cut(s) | 426 |
| Csp6I | GTAC | 3 cut(s) | 251, 373, 857 |
| CviAII | CATG | 4 cut(s) | 94, 302, 688, 800 |
| CviJI | RGCY | 5 cut(s) | 43, 77, 127, 710, 794 |
| CviKI_1 | RGCY | 5 cut(s) | 43, 77, 127, 710, 794 |
| CviQI | GTAC | 3 cut(s) | 251, 373, 857 |
| DdeI | CTNAG | 2 cut(s) | 66, 790 |
| DpnI | GATC | 3 cut(s) | 425, 535, 840 |
| DpnII | GATC | 3 cut(s) | 423, 533, 838 |
| DraI | TTTAAA | 1 cut(s) | 774 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 288 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 288 |
| Eco47I | GGWCC | 1 cut(s) | 466 |
| Eco88I | CYCGRG | 1 cut(s) | 56 |
| EcoO109I | RGGNCCY | 1 cut(s) | 466 |
| FaeI | CATG | 4 cut(s) | 97, 305, 691, 803 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 816, 848 |
| FaqI | GGGAC | 3 cut(s) | 161, 452, 536 |
| FatI | CATG | 4 cut(s) | 93, 301, 687, 799 |
| FauI | CCCGC | 2 cut(s) | 542, 707 |
| FbaI | TGATCA | 1 cut(s) | 838 |
| FblI | GTMKAC | 2 cut(s) | 109, 726 |
| Fnu4HI | GCNGC | 3 cut(s) | 78, 81, 138 |
| FokI | GGATG | 2 cut(s) | 83, 229 |
| Fsp4HI | GCNGC | 3 cut(s) | 78, 81, 138 |
| FspBI | CTAG | 3 cut(s) | 182, 585, 711 |
| GluI | GCNGC | 3 cut(s) | 78, 81, 138 |
| HapII | CCGG | 2 cut(s) | 57, 866 |
| Hin1II | CATG | 4 cut(s) | 97, 305, 691, 803 |
| HincII | GTYRAC | 1 cut(s) | 63 |
| HindII | GTYRAC | 1 cut(s) | 63 |
| HinfI | GANTC | 1 cut(s) | 704 |
| HpaII | CCGG | 2 cut(s) | 57, 866 |
| Hpy166II | GTNNAC | 5 cut(s) | 63, 110, 251, 727, 741 |
| Hpy8I | GTNNAC | 5 cut(s) | 63, 110, 251, 727, 741 |
| HpyCH4III | ACNGT | 3 cut(s) | 226, 632, 861 |
| HpyCH4IV | ACGT | 1 cut(s) | 346 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 448 |
| HpyF3I | CTNAG | 2 cut(s) | 66, 790 |
| HpySE526I | ACGT | 1 cut(s) | 346 |
| Hsp92II | CATG | 4 cut(s) | 97, 305, 691, 803 |
| Ksp22I | TGATCA | 1 cut(s) | 838 |
| Kzo9I | GATC | 3 cut(s) | 423, 533, 838 |
| LpnPI | CCDG | 7 cut(s) | 70, 243, 245, 259, 273, 348, 378 |
| Lsp1109I | GCAGC | 3 cut(s) | 64, 67, 124 |
| LweI | GCATC | 1 cut(s) | 16 |
| MaeI | CTAG | 3 cut(s) | 182, 585, 711 |
| MaeII | ACGT | 1 cut(s) | 346 |
| MaeIII | GTNAC | 2 cut(s) | 308, 482 |
| MalI | GATC | 3 cut(s) | 425, 535, 840 |
| MboI | GATC | 3 cut(s) | 423, 533, 838 |
| MboII | GAAGA | 5 cut(s) | 25, 284, 320, 391, 676 |
| MhlI | GDGCHC | 1 cut(s) | 866 |
| MluCI | AATT | 5 cut(s) | 16, 378, 437, 537, 645 |
| MlyI | GAGTC | 1 cut(s) | 713 |
| MmeI | TCCRAC | 1 cut(s) | 149 |
| MnlI | CCTC | 3 cut(s) | 67, 457, 646 |
| MroXI | GAANNNNTTC | 1 cut(s) | 176 |
| MseI | TTAA | 5 cut(s) | 294, 507, 720, 750, 773 |
| MslI | CAYNNNNRTG | 2 cut(s) | 317, 774 |
| MspI | CCGG | 2 cut(s) | 57, 866 |
| MspR9I | CCNGG | 3 cut(s) | 57, 58, 866 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 448 |
| NciI | CCSGG | 3 cut(s) | 57, 58, 866 |
| NdeII | GATC | 3 cut(s) | 423, 533, 838 |
| NheI | GCTAGC | 1 cut(s) | 710 |
| NlaIII | CATG | 4 cut(s) | 97, 305, 691, 803 |
| NlaIV | GGNNCC | 2 cut(s) | 468, 863 |
| NmuCI | GTSAC | 1 cut(s) | 308 |
| NspV | TTCGAA | 1 cut(s) | 434 |
| PdmI | GAANNNNTTC | 1 cut(s) | 176 |
| PflFI | GACNNNGTC | 1 cut(s) | 95 |
| PkrI | GCNGC | 3 cut(s) | 79, 82, 139 |
| PleI | GAGTC | 1 cut(s) | 712 |
| PpsI | GAGTC | 1 cut(s) | 712 |
| PpuMI | RGGWCCY | 1 cut(s) | 466 |
| Psp5II | RGGWCCY | 1 cut(s) | 466 |
| PspN4I | GGNNCC | 2 cut(s) | 468, 863 |
| PspPI | GGNCC | 1 cut(s) | 466 |
| PspPPI | RGGWCCY | 1 cut(s) | 466 |
| PsyI | GACNNNGTC | 1 cut(s) | 95 |
| RsaI | GTAC | 3 cut(s) | 252, 374, 858 |
| RsaNI | GTAC | 3 cut(s) | 251, 373, 857 |
| RseI | CAYNNNNRTG | 2 cut(s) | 317, 774 |
| SaqAI | TTAA | 5 cut(s) | 294, 507, 720, 750, 773 |
| SatI | GCNGC | 3 cut(s) | 78, 81, 138 |
| Sau3AI | GATC | 3 cut(s) | 423, 533, 838 |
| Sau96I | GGNCC | 1 cut(s) | 466 |
| SchI | GAGTC | 1 cut(s) | 713 |
| ScrFI | CCNGG | 3 cut(s) | 57, 58, 866 |
| SduI | GDGCHC | 1 cut(s) | 866 |
| SetI | ASST | 7 cut(s) | 45, 349, 374, 468, 657, 712, 796 |
| SfaNI | GCATC | 1 cut(s) | 16 |
| SfuI | TTCGAA | 1 cut(s) | 434 |
| SinI | GGWCC | 1 cut(s) | 466 |
| SmaI | CCCGGG | 1 cut(s) | 58 |
| SmiI | ATTTAAAT | 1 cut(s) | 774 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 317, 774 |
| Sse9I | AATT | 5 cut(s) | 16, 378, 437, 537, 645 |
| SsiI | CCGC | 2 cut(s) | 549, 714 |
| SspMI | CTAG | 3 cut(s) | 182, 585, 711 |
| StyD4I | CCNGG | 3 cut(s) | 55, 56, 864 |
| SwaI | ATTTAAAT | 1 cut(s) | 774 |
| TaaI | ACNGT | 3 cut(s) | 226, 632, 861 |
| TaiI | ACGT | 1 cut(s) | 349 |
| TaqI | TCGA | 3 cut(s) | 99, 426, 434 |
| TasI | AATT | 5 cut(s) | 16, 378, 437, 537, 645 |
| Tru1I | TTAA | 5 cut(s) | 294, 507, 720, 750, 773 |
| Tru9I | TTAA | 5 cut(s) | 294, 507, 720, 750, 773 |
| TscAI | CASTG | 1 cut(s) | 253 |
| TseFI | GTSAC | 1 cut(s) | 308 |
| TseI | GCWGC | 3 cut(s) | 77, 80, 137 |
| Tsp45I | GTSAC | 1 cut(s) | 308 |
| TspDTI | ATGAA | 2 cut(s) | 231, 676 |
| TspGWI | ACGGA | 1 cut(s) | 771 |
| TspMI | CCCGGG | 1 cut(s) | 56 |
| TspRI | CASTG | 1 cut(s) | 253 |
| Tth111I | GACNNNGTC | 1 cut(s) | 95 |
| VpaK11BI | GGWCC | 1 cut(s) | 466 |
| XapI | RAATTY | 1 cut(s) | 645 |
| XmaI | CCCGGG | 1 cut(s) | 56 |
| XmiI | GTMKAC | 2 cut(s) | 109, 726 |
| XmnI | GAANNNNTTC | 1 cut(s) | 176 |
| XspI | CTAG | 3 cut(s) | 182, 585, 711 |