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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 387 |
| AciI | CCGC | 2 cut(s) | 385, 387 |
| AclWI | GGATC | 2 cut(s) | 59, 397 |
| AcuI | CTGAAG | 1 cut(s) | 306 |
| AleI | CACNNNNGTG | 1 cut(s) | 251 |
| AluBI | AGCT | 2 cut(s) | 32, 133 |
| AluI | AGCT | 2 cut(s) | 32, 133 |
| AlwI | GGATC | 2 cut(s) | 59, 397 |
| AoxI | GGCC | 4 cut(s) | 368, 398, 408, 416 |
| AseI | ATTAAT | 1 cut(s) | 186 |
| AspS9I | GGNCC | 3 cut(s) | 323, 398, 417 |
| AvaII | GGWCC | 1 cut(s) | 323 |
| BaeGI | GKGCMC | 1 cut(s) | 9 |
| BccI | CCATC | 2 cut(s) | 187, 397 |
| BciVI | GTATCC | 1 cut(s) | 133 |
| BclI | TGATCA | 1 cut(s) | 151 |
| BfuI | GTATCC | 1 cut(s) | 133 |
| Bme18I | GGWCC | 1 cut(s) | 323 |
| BmgT120I | GGNCC | 3 cut(s) | 323, 398, 417 |
| BmsI | GCATC | 1 cut(s) | 205 |
| BsaJI | CCNNGG | 1 cut(s) | 385 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 349, 379 |
| Bse118I | RCCGGY | 1 cut(s) | 414 |
| Bse1I | ACTGG | 1 cut(s) | 119 |
| BseDI | CCNNGG | 1 cut(s) | 385 |
| BseNI | ACTGG | 1 cut(s) | 119 |
| BseSI | GKGCMC | 1 cut(s) | 9 |
| BseYI | CCCAGC | 1 cut(s) | 133 |
| Bsh1236I | CGCG | 1 cut(s) | 387 |
| BshFI | GGCC | 4 cut(s) | 370, 400, 410, 418 |
| BsiSI | CCGG | 1 cut(s) | 415 |
| BsnI | GGCC | 4 cut(s) | 370, 400, 410, 418 |
| Bsp1286I | GDGCHC | 1 cut(s) | 9 |
| Bsp143I | GATC | 3 cut(s) | 64, 151, 389 |
| BspACI | CCGC | 2 cut(s) | 385, 387 |
| BspANI | GGCC | 4 cut(s) | 370, 400, 410, 418 |
| BspFNI | CGCG | 1 cut(s) | 387 |
| BspHI | TCATGA | 1 cut(s) | 277 |
| BspPI | GGATC | 2 cut(s) | 59, 397 |
| BspQI | GCTCTTC | 1 cut(s) | 252 |
| BsrFI | RCCGGY | 1 cut(s) | 414 |
| BsrI | ACTGG | 1 cut(s) | 119 |
| BssAI | RCCGGY | 1 cut(s) | 414 |
| BssECI | CCNNGG | 1 cut(s) | 385 |
| BssMI | GATC | 3 cut(s) | 64, 151, 389 |
| Bst6I | CTCTTC | 1 cut(s) | 252 |
| BstC8I | GCNNGC | 3 cut(s) | 385, 412, 416 |
| BstDSI | CCRYGG | 1 cut(s) | 385 |
| BstFNI | CGCG | 1 cut(s) | 387 |
| BstKTI | GATC | 3 cut(s) | 67, 154, 392 |
| BstMBI | GATC | 3 cut(s) | 64, 151, 389 |
| BstSLI | GKGCMC | 1 cut(s) | 9 |
| BstUI | CGCG | 1 cut(s) | 387 |
| BstX2I | RGATCY | 1 cut(s) | 64 |
| BstYI | RGATCY | 1 cut(s) | 64 |
| BsuI | GTATCC | 1 cut(s) | 133 |
| BsuRI | GGCC | 4 cut(s) | 370, 400, 410, 418 |
| BtgI | CCRYGG | 1 cut(s) | 385 |
| BtsI | GCAGTG | 1 cut(s) | 173 |
| BtsIMutI | CAGTG | 1 cut(s) | 173 |
| Cac8I | GCNNGC | 3 cut(s) | 385, 412, 416 |
| CciI | TCATGA | 1 cut(s) | 277 |
| Cfr10I | RCCGGY | 1 cut(s) | 414 |
| Cfr13I | GGNCC | 3 cut(s) | 323, 398, 417 |
| Cfr42I | CCGCGG | 1 cut(s) | 388 |
| CviAII | CATG | 2 cut(s) | 249, 278 |
| CviJI | RGCY | 7 cut(s) | 32, 133, 370, 383, 400, 410, 418 |
| CviKI_1 | RGCY | 7 cut(s) | 32, 133, 370, 383, 400, 410, 418 |
| DpnI | GATC | 3 cut(s) | 66, 153, 391 |
| DpnII | GATC | 3 cut(s) | 64, 151, 389 |
| Eam1104I | CTCTTC | 1 cut(s) | 252 |
| EarI | CTCTTC | 1 cut(s) | 252 |
| Eco147I | AGGCCT | 2 cut(s) | 370, 410 |
| Eco47I | GGWCC | 1 cut(s) | 323 |
| Eco57I | CTGAAG | 1 cut(s) | 306 |
| FaeI | CATG | 2 cut(s) | 252, 281 |
| FaiI | YATR | 6 cut(s) | 200, 225, 250, 264, 279, 351 |
| FatI | CATG | 2 cut(s) | 248, 277 |
| FauI | CCCGC | 1 cut(s) | 392 |
| FbaI | TGATCA | 1 cut(s) | 151 |
| GsaI | CCCAGC | 1 cut(s) | 137 |
| HaeIII | GGCC | 4 cut(s) | 370, 400, 410, 418 |
| HapII | CCGG | 1 cut(s) | 415 |
| Hin1II | CATG | 2 cut(s) | 252, 281 |
| HinfI | GANTC | 2 cut(s) | 17, 74 |
| HpaII | CCGG | 1 cut(s) | 415 |
| Hpy188I | TCNGA | 4 cut(s) | 230, 304, 333, 340 |
| Hpy188III | TCNNGA | 1 cut(s) | 278 |
| HpyAV | CCTTC | 2 cut(s) | 236, 307 |
| HpyCH4V | TGCA | 2 cut(s) | 43, 218 |
| Hsp92II | CATG | 2 cut(s) | 252, 281 |
| KroI | GCCGGC | 1 cut(s) | 414 |
| KroNI | GCCGGC | 1 cut(s) | 416 |
| Ksp22I | TGATCA | 1 cut(s) | 151 |
| KspI | CCGCGG | 1 cut(s) | 388 |
| Kzo9I | GATC | 3 cut(s) | 64, 151, 389 |
| LguI | GCTCTTC | 1 cut(s) | 252 |
| LpnPI | CCDG | 3 cut(s) | 81, 100, 119 |
| LweI | GCATC | 1 cut(s) | 205 |
| MalI | GATC | 3 cut(s) | 66, 153, 391 |
| MboI | GATC | 3 cut(s) | 64, 151, 389 |
| MboII | GAAGA | 5 cut(s) | 137, 269, 281, 299, 322 |
| MflI | RGATCY | 1 cut(s) | 64 |
| MhlI | GDGCHC | 1 cut(s) | 9 |
| MluCI | AATT | 1 cut(s) | 107 |
| MlyI | GAGTC | 1 cut(s) | 68 |
| MmeI | TCCRAC | 2 cut(s) | 350, 363 |
| MnlI | CCTC | 3 cut(s) | 314, 381, 400 |
| MroNI | GCCGGC | 1 cut(s) | 414 |
| MseI | TTAA | 3 cut(s) | 60, 119, 186 |
| MslI | CAYNNNNRTG | 1 cut(s) | 251 |
| MspA1I | CMGCKG | 1 cut(s) | 387 |
| MspI | CCGG | 1 cut(s) | 415 |
| MvnI | CGCG | 1 cut(s) | 387 |
| NaeI | GCCGGC | 1 cut(s) | 416 |
| NdeII | GATC | 3 cut(s) | 64, 151, 389 |
| NgoMIV | GCCGGC | 1 cut(s) | 414 |
| NlaIII | CATG | 2 cut(s) | 252, 281 |
| OliI | CACNNNNGTG | 1 cut(s) | 251 |
| PagI | TCATGA | 1 cut(s) | 277 |
| PceI | AGGCCT | 2 cut(s) | 370, 410 |
| PciSI | GCTCTTC | 1 cut(s) | 252 |
| PdiI | GCCGGC | 1 cut(s) | 416 |
| PfeI | GAWTC | 1 cut(s) | 17 |
| PleI | GAGTC | 1 cut(s) | 68 |
| PpsI | GAGTC | 1 cut(s) | 68 |
| PshBI | ATTAAT | 1 cut(s) | 186 |
| PspFI | CCCAGC | 1 cut(s) | 133 |
| PspPI | GGNCC | 3 cut(s) | 323, 398, 417 |
| PsuI | RGATCY | 1 cut(s) | 64 |
| RseI | CAYNNNNRTG | 1 cut(s) | 251 |
| SacII | CCGCGG | 1 cut(s) | 388 |
| SapI | GCTCTTC | 1 cut(s) | 252 |
| SaqAI | TTAA | 3 cut(s) | 60, 119, 186 |
| Sau3AI | GATC | 3 cut(s) | 64, 151, 389 |
| Sau96I | GGNCC | 3 cut(s) | 323, 398, 417 |
| SchI | GAGTC | 1 cut(s) | 68 |
| SduI | GDGCHC | 1 cut(s) | 9 |
| SetI | ASST | 4 cut(s) | 34, 51, 135, 325 |
| SfaNI | GCATC | 1 cut(s) | 205 |
| Sfr303I | CCGCGG | 1 cut(s) | 388 |
| SgrBI | CCGCGG | 1 cut(s) | 388 |
| SinI | GGWCC | 1 cut(s) | 323 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 251 |
| Sse9I | AATT | 1 cut(s) | 107 |
| SseBI | AGGCCT | 2 cut(s) | 370, 410 |
| SsiI | CCGC | 2 cut(s) | 385, 387 |
| StuI | AGGCCT | 2 cut(s) | 370, 410 |
| TaqI | TCGA | 1 cut(s) | 195 |
| TasI | AATT | 1 cut(s) | 107 |
| TfiI | GAWTC | 1 cut(s) | 17 |
| Tru1I | TTAA | 3 cut(s) | 60, 119, 186 |
| Tru9I | TTAA | 3 cut(s) | 60, 119, 186 |
| TscAI | CASTG | 1 cut(s) | 180 |
| TspDTI | ATGAA | 2 cut(s) | 138, 338 |
| TspRI | CASTG | 1 cut(s) | 180 |
| VpaK11BI | GGWCC | 1 cut(s) | 323 |
| VspI | ATTAAT | 1 cut(s) | 186 |