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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 393, 435 |
| AciI | CCGC | 2 cut(s) | 365, 380 |
| AclWI | GGATC | 2 cut(s) | 406, 419 |
| AcoI | YGGCCR | 1 cut(s) | 323 |
| AfaI | GTAC | 3 cut(s) | 36, 173, 284 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 279, 449 |
| AgeI | ACCGGT | 1 cut(s) | 247 |
| AgsI | TTSAA | 3 cut(s) | 41, 117, 149 |
| AluBI | AGCT | 2 cut(s) | 163, 419 |
| AluI | AGCT | 2 cut(s) | 163, 419 |
| AlwI | GGATC | 2 cut(s) | 406, 419 |
| AoxI | GGCC | 2 cut(s) | 323, 421 |
| ApeKI | GCWGC | 2 cut(s) | 96, 121 |
| AsiGI | ACCGGT | 1 cut(s) | 247 |
| AspS9I | GGNCC | 2 cut(s) | 245, 422 |
| AsuHPI | GGTGA | 1 cut(s) | 209 |
| AsuII | TTCGAA | 1 cut(s) | 310 |
| AvaII | GGWCC | 1 cut(s) | 245 |
| AxyI | CCTNAGG | 1 cut(s) | 448 |
| BamHI | GGATCC | 1 cut(s) | 411 |
| BbvCI | CCTCAGC | 1 cut(s) | 357 |
| BbvI | GCAGC | 2 cut(s) | 108, 108 |
| BccI | CCATC | 4 cut(s) | 32, 104, 190, 255 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 88, 122 |
| BciVI | GTATCC | 1 cut(s) | 279 |
| BfaI | CTAG | 1 cut(s) | 221 |
| BfmI | CTRYAG | 1 cut(s) | 94 |
| BfuI | GTATCC | 1 cut(s) | 279 |
| BglII | AGATCT | 1 cut(s) | 291 |
| BisI | GCNGC | 2 cut(s) | 97, 122 |
| BlsI | GCNGC | 2 cut(s) | 98, 123 |
| BmcAI | AGTACT | 1 cut(s) | 173 |
| Bme18I | GGWCC | 1 cut(s) | 245 |
| BmgT120I | GGNCC | 2 cut(s) | 245, 422 |
| BmiI | GGNNCC | 1 cut(s) | 413 |
| Bpu10I | CCTNAGC | 1 cut(s) | 357 |
| Bpu14I | TTCGAA | 1 cut(s) | 310 |
| Bsa29I | ATCGAT | 1 cut(s) | 108 |
| BsaJI | CCNNGG | 1 cut(s) | 28 |
| BsaWI | WCCGGW | 1 cut(s) | 247 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 27 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 279, 449 |
| Bse118I | RCCGGY | 2 cut(s) | 46, 247 |
| Bse21I | CCTNAGG | 1 cut(s) | 448 |
| Bse3DI | GCAATG | 1 cut(s) | 336 |
| BseCI | ATCGAT | 1 cut(s) | 108 |
| BseDI | CCNNGG | 1 cut(s) | 28 |
| BseGI | GGATG | 3 cut(s) | 24, 182, 270 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 279, 449 |
| BseMI | GCAATG | 1 cut(s) | 336 |
| BseMII | CTCAG | 1 cut(s) | 348 |
| BseRI | GAGGAG | 1 cut(s) | 374 |
| BseXI | GCAGC | 2 cut(s) | 108, 108 |
| BseYI | CCCAGC | 1 cut(s) | 415 |
| BshFI | GGCC | 2 cut(s) | 325, 423 |
| BshTI | ACCGGT | 1 cut(s) | 247 |
| BshVI | ATCGAT | 1 cut(s) | 108 |
| BsiSI | CCGG | 2 cut(s) | 47, 248 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 279, 449 |
| BsnI | GGCC | 2 cut(s) | 325, 423 |
| Bsp119I | TTCGAA | 1 cut(s) | 310 |
| Bsp143I | GATC | 2 cut(s) | 291, 411 |
| BspACI | CCGC | 2 cut(s) | 365, 380 |
| BspANI | GGCC | 2 cut(s) | 325, 423 |
| BspCNI | CTCAG | 1 cut(s) | 349 |
| BspDI | ATCGAT | 1 cut(s) | 108 |
| BspLI | GGNNCC | 1 cut(s) | 413 |
| BspMAI | CTGCAG | 1 cut(s) | 98 |
| BspPI | GGATC | 2 cut(s) | 406, 419 |
| BspT104I | TTCGAA | 1 cut(s) | 310 |
| BsrDI | GCAATG | 1 cut(s) | 336 |
| BsrFI | RCCGGY | 2 cut(s) | 46, 247 |
| BssAI | RCCGGY | 2 cut(s) | 46, 247 |
| BssECI | CCNNGG | 1 cut(s) | 28 |
| BssMI | GATC | 2 cut(s) | 291, 411 |
| Bst4CI | ACNGT | 2 cut(s) | 214, 433 |
| BstBI | TTCGAA | 1 cut(s) | 310 |
| BstC8I | GCNNGC | 1 cut(s) | 421 |
| BstDEI | CTNAG | 2 cut(s) | 357, 448 |
| BstDSI | CCRYGG | 1 cut(s) | 28 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 277, 447 |
| BstF5I | GGATG | 3 cut(s) | 24, 182, 270 |
| BstKTI | GATC | 2 cut(s) | 294, 414 |
| BstMBI | GATC | 2 cut(s) | 291, 411 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 362 |
| BstSFI | CTRYAG | 1 cut(s) | 94 |
| BstV1I | GCAGC | 2 cut(s) | 108, 108 |
| BstX2I | RGATCY | 2 cut(s) | 291, 411 |
| BstYI | RGATCY | 2 cut(s) | 291, 411 |
| Bsu15I | ATCGAT | 1 cut(s) | 108 |
| Bsu36I | CCTNAGG | 1 cut(s) | 448 |
| BsuI | GTATCC | 1 cut(s) | 279 |
| BsuRI | GGCC | 2 cut(s) | 325, 423 |
| BsuTUI | ATCGAT | 1 cut(s) | 108 |
| BtgI | CCRYGG | 1 cut(s) | 28 |
| BtsCI | GGATG | 3 cut(s) | 24, 182, 270 |
| Cac8I | GCNNGC | 1 cut(s) | 421 |
| Cfr10I | RCCGGY | 2 cut(s) | 46, 247 |
| Cfr13I | GGNCC | 2 cut(s) | 245, 422 |
| ClaI | ATCGAT | 1 cut(s) | 108 |
| Csp6I | GTAC | 3 cut(s) | 35, 172, 283 |
| CspAI | ACCGGT | 1 cut(s) | 247 |
| CviAII | CATG | 1 cut(s) | 286 |
| CviJI | RGCY | 7 cut(s) | 46, 121, 163, 325, 419, 423, 442 |
| CviKI_1 | RGCY | 7 cut(s) | 46, 121, 163, 325, 419, 423, 442 |
| CviQI | GTAC | 3 cut(s) | 35, 172, 283 |
| DdeI | CTNAG | 2 cut(s) | 357, 448 |
| DpnI | GATC | 2 cut(s) | 293, 413 |
| DpnII | GATC | 2 cut(s) | 291, 411 |
| EaeI | YGGCCR | 1 cut(s) | 323 |
| Eco47I | GGWCC | 1 cut(s) | 245 |
| Eco81I | CCTNAGG | 1 cut(s) | 448 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 277, 447 |
| FaeI | CATG | 1 cut(s) | 289 |
| FaiI | YATR | 5 cut(s) | 197, 241, 287, 306, 351 |
| FatI | CATG | 1 cut(s) | 285 |
| FblI | GTMKAC | 2 cut(s) | 393, 435 |
| Fnu4HI | GCNGC | 2 cut(s) | 97, 122 |
| FokI | GGATG | 3 cut(s) | 11, 169, 277 |
| Fsp4HI | GCNGC | 2 cut(s) | 97, 122 |
| FspBI | CTAG | 1 cut(s) | 221 |
| GluI | GCNGC | 2 cut(s) | 97, 122 |
| GsaI | CCCAGC | 1 cut(s) | 419 |
| HaeIII | GGCC | 2 cut(s) | 325, 423 |
| HapII | CCGG | 2 cut(s) | 47, 248 |
| Hin1II | CATG | 1 cut(s) | 289 |
| HincII | GTYRAC | 1 cut(s) | 394 |
| HindII | GTYRAC | 1 cut(s) | 394 |
| HpaII | CCGG | 2 cut(s) | 47, 248 |
| HphI | GGTGA | 1 cut(s) | 209 |
| Hpy166II | GTNNAC | 5 cut(s) | 35, 217, 245, 394, 436 |
| Hpy188I | TCNGA | 1 cut(s) | 53 |
| Hpy188III | TCNNGA | 1 cut(s) | 277 |
| Hpy8I | GTNNAC | 5 cut(s) | 35, 217, 245, 394, 436 |
| Hpy99I | CGWCG | 2 cut(s) | 395, 398 |
| HpyAV | CCTTC | 2 cut(s) | 283, 323 |
| HpyCH4III | ACNGT | 2 cut(s) | 214, 433 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 96, 297, 336 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 362 |
| HpyF3I | CTNAG | 2 cut(s) | 357, 448 |
| Hsp92II | CATG | 1 cut(s) | 289 |
| Kzo9I | GATC | 2 cut(s) | 291, 411 |
| LpnPI | CCDG | 8 cut(s) | 30, 60, 149, 261, 339, 405, 429, 435 |
| Lsp1109I | GCAGC | 2 cut(s) | 108, 108 |
| MaeI | CTAG | 1 cut(s) | 221 |
| MalI | GATC | 2 cut(s) | 293, 413 |
| MboI | GATC | 2 cut(s) | 291, 411 |
| MboII | GAAGA | 1 cut(s) | 301 |
| MflI | RGATCY | 2 cut(s) | 291, 411 |
| MluCI | AATT | 1 cut(s) | 54 |
| MnlI | CCTC | 7 cut(s) | 23, 223, 273, 352, 355, 435, 457 |
| MseI | TTAA | 1 cut(s) | 84 |
| MspA1I | CMGCKG | 1 cut(s) | 419 |
| MspI | CCGG | 2 cut(s) | 47, 248 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 362 |
| NdeII | GATC | 2 cut(s) | 291, 411 |
| NlaIII | CATG | 1 cut(s) | 289 |
| NlaIV | GGNNCC | 1 cut(s) | 413 |
| NmeAIII | GCCGAG | 1 cut(s) | 367 |
| NspV | TTCGAA | 1 cut(s) | 310 |
| PinAI | ACCGGT | 1 cut(s) | 247 |
| PkrI | GCNGC | 2 cut(s) | 98, 123 |
| PspFI | CCCAGC | 1 cut(s) | 415 |
| PspN4I | GGNNCC | 1 cut(s) | 413 |
| PspPI | GGNCC | 2 cut(s) | 245, 422 |
| PstI | CTGCAG | 1 cut(s) | 98 |
| PsuI | RGATCY | 2 cut(s) | 291, 411 |
| PvuII | CAGCTG | 1 cut(s) | 419 |
| RsaI | GTAC | 3 cut(s) | 36, 173, 284 |
| RsaNI | GTAC | 3 cut(s) | 35, 172, 283 |
| SalI | GTCGAC | 1 cut(s) | 392 |
| SaqAI | TTAA | 1 cut(s) | 84 |
| SatI | GCNGC | 2 cut(s) | 97, 122 |
| Sau3AI | GATC | 2 cut(s) | 291, 411 |
| Sau96I | GGNCC | 2 cut(s) | 245, 422 |
| ScaI | AGTACT | 1 cut(s) | 173 |
| SetI | ASST | 9 cut(s) | 71, 165, 222, 234, 284, 334, 421, 449, 454 |
| SfcI | CTRYAG | 1 cut(s) | 94 |
| SfuI | TTCGAA | 1 cut(s) | 310 |
| SgrDI | CGTCGACG | 1 cut(s) | 392 |
| SinI | GGWCC | 1 cut(s) | 245 |
| Sse9I | AATT | 1 cut(s) | 54 |
| SsiI | CCGC | 2 cut(s) | 365, 380 |
| SspMI | CTAG | 1 cut(s) | 221 |
| TaaI | ACNGT | 2 cut(s) | 214, 433 |
| TaqI | TCGA | 5 cut(s) | 108, 259, 276, 310, 393 |
| TasI | AATT | 1 cut(s) | 54 |
| TatI | WGTACW | 2 cut(s) | 34, 171 |
| Tru1I | TTAA | 1 cut(s) | 84 |
| Tru9I | TTAA | 1 cut(s) | 84 |
| TseI | GCWGC | 2 cut(s) | 96, 121 |
| TspDTI | ATGAA | 4 cut(s) | 102, 153, 194, 302 |
| TspGWI | ACGGA | 1 cut(s) | 17 |
| VpaK11BI | GGWCC | 1 cut(s) | 245 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 277, 447 |
| XmiI | GTMKAC | 2 cut(s) | 393, 435 |
| XspI | CTAG | 1 cut(s) | 221 |
| ZrmI | AGTACT | 1 cut(s) | 173 |