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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 465 |
| Acc36I | ACCTGC | 2 cut(s) | 263, 565 |
| AciI | CCGC | 1 cut(s) | 23 |
| AcsI | RAATTY | 2 cut(s) | 71, 615 |
| AcyI | GRCGYC | 1 cut(s) | 399 |
| AfaI | GTAC | 2 cut(s) | 121, 738 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 686, 726 |
| AflII | CTTAAG | 1 cut(s) | 238 |
| AgsI | TTSAA | 1 cut(s) | 696 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 389 |
| AluBI | AGCT | 1 cut(s) | 188 |
| AluI | AGCT | 1 cut(s) | 188 |
| Alw26I | GTCTC | 1 cut(s) | 87 |
| AoxI | GGCC | 1 cut(s) | 225 |
| ApoI | RAATTY | 2 cut(s) | 71, 615 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 158, 190 |
| AspS9I | GGNCC | 1 cut(s) | 166 |
| AsuC2I | CCSGG | 1 cut(s) | 420 |
| AsuHPI | GGTGA | 1 cut(s) | 67 |
| AvaII | GGWCC | 1 cut(s) | 166 |
| BaeGI | GKGCMC | 1 cut(s) | 680 |
| BbsI | GAAGAC | 1 cut(s) | 587 |
| BccI | CCATC | 5 cut(s) | 10, 177, 201, 349, 693 |
| BcnI | CCSGG | 1 cut(s) | 420 |
| BcoDI | GTCTC | 1 cut(s) | 87 |
| BfaI | CTAG | 5 cut(s) | 90, 195, 452, 596, 681 |
| BfrI | CTTAAG | 1 cut(s) | 238 |
| BfuAI | ACCTGC | 2 cut(s) | 263, 565 |
| BglII | AGATCT | 1 cut(s) | 32 |
| Bme1390I | CCNGG | 1 cut(s) | 420 |
| Bme18I | GGWCC | 1 cut(s) | 166 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 389 |
| BmgT120I | GGNCC | 1 cut(s) | 166 |
| BmiI | GGNNCC | 1 cut(s) | 167 |
| BmrFI | CCNGG | 1 cut(s) | 420 |
| BmsI | GCATC | 2 cut(s) | 181, 655 |
| BpiI | GAAGAC | 1 cut(s) | 587 |
| BpuMI | CCSGG | 1 cut(s) | 420 |
| BsaHI | GRCGYC | 1 cut(s) | 399 |
| BsaI | GGTCTC | 1 cut(s) | 87 |
| BsaJI | CCNNGG | 1 cut(s) | 78 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 22, 52 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 686, 726 |
| Bse1I | ACTGG | 1 cut(s) | 539 |
| Bse3DI | GCAATG | 2 cut(s) | 316, 553 |
| BseDI | CCNNGG | 1 cut(s) | 78 |
| BseGI | GGATG | 1 cut(s) | 21 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 686, 726 |
| BseMI | GCAATG | 2 cut(s) | 316, 553 |
| BseMII | CTCAG | 2 cut(s) | 498, 578 |
| BseNI | ACTGG | 1 cut(s) | 539 |
| BseSI | GKGCMC | 1 cut(s) | 680 |
| BshFI | GGCC | 1 cut(s) | 227 |
| BsiSI | CCGG | 1 cut(s) | 420 |
| BslFI | GGGAC | 1 cut(s) | 179 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 686, 726 |
| BsmAI | GTCTC | 1 cut(s) | 87 |
| BsmFI | GGGAC | 1 cut(s) | 179 |
| BsnI | GGCC | 1 cut(s) | 227 |
| Bso31I | GGTCTC | 1 cut(s) | 87 |
| Bsp1286I | GDGCHC | 1 cut(s) | 680 |
| Bsp1407I | TGTACA | 1 cut(s) | 119 |
| Bsp143I | GATC | 1 cut(s) | 32 |
| BspACI | CCGC | 1 cut(s) | 23 |
| BspANI | GGCC | 1 cut(s) | 227 |
| BspCNI | CTCAG | 2 cut(s) | 499, 579 |
| BspLI | GGNNCC | 1 cut(s) | 167 |
| BspMI | ACCTGC | 2 cut(s) | 263, 565 |
| BspTI | CTTAAG | 1 cut(s) | 238 |
| BspTNI | GGTCTC | 1 cut(s) | 87 |
| BsrDI | GCAATG | 2 cut(s) | 316, 553 |
| BsrGI | TGTACA | 1 cut(s) | 119 |
| BsrI | ACTGG | 1 cut(s) | 539 |
| BssECI | CCNNGG | 1 cut(s) | 78 |
| BssMI | GATC | 1 cut(s) | 32 |
| BssNI | GRCGYC | 1 cut(s) | 399 |
| BssT1I | CCWWGG | 1 cut(s) | 78 |
| Bst4CI | ACNGT | 5 cut(s) | 63, 290, 387, 411, 485 |
| BstACI | GRCGYC | 1 cut(s) | 399 |
| BstAFI | CTTAAG | 1 cut(s) | 238 |
| BstAUI | TGTACA | 1 cut(s) | 119 |
| BstC8I | GCNNGC | 1 cut(s) | 625 |
| BstDEI | CTNAG | 3 cut(s) | 507, 587, 672 |
| BstF5I | GGATG | 1 cut(s) | 21 |
| BstKTI | GATC | 1 cut(s) | 35 |
| BstMAI | GTCTC | 1 cut(s) | 87 |
| BstMBI | GATC | 1 cut(s) | 32 |
| BstSCI | CCNGG | 1 cut(s) | 418 |
| BstSLI | GKGCMC | 1 cut(s) | 680 |
| BstV2I | GAAGAC | 1 cut(s) | 587 |
| BstX2I | RGATCY | 1 cut(s) | 32 |
| BstYI | RGATCY | 1 cut(s) | 32 |
| BsuRI | GGCC | 1 cut(s) | 227 |
| BtsCI | GGATG | 1 cut(s) | 21 |
| BveI | ACCTGC | 2 cut(s) | 263, 565 |
| Cac8I | GCNNGC | 1 cut(s) | 625 |
| Cfr13I | GGNCC | 1 cut(s) | 166 |
| CseI | GACGC | 3 cut(s) | 272, 356, 407 |
| Csp6I | GTAC | 2 cut(s) | 120, 737 |
| CviAII | CATG | 4 cut(s) | 12, 111, 218, 620 |
| CviJI | RGCY | 2 cut(s) | 188, 227 |
| CviKI_1 | RGCY | 2 cut(s) | 188, 227 |
| CviQI | GTAC | 2 cut(s) | 120, 737 |
| DdeI | CTNAG | 3 cut(s) | 507, 587, 672 |
| DpnI | GATC | 1 cut(s) | 34 |
| DpnII | GATC | 1 cut(s) | 32 |
| DriI | GACNNNNNGTC | 1 cut(s) | 389 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 389 |
| Eco130I | CCWWGG | 1 cut(s) | 78 |
| Eco147I | AGGCCT | 1 cut(s) | 227 |
| Eco31I | GGTCTC | 1 cut(s) | 87 |
| Eco47I | GGWCC | 1 cut(s) | 166 |
| EcoT14I | CCWWGG | 1 cut(s) | 78 |
| ErhI | CCWWGG | 1 cut(s) | 78 |
| FaeI | CATG | 4 cut(s) | 15, 114, 221, 623 |
| FaqI | GGGAC | 1 cut(s) | 179 |
| FatI | CATG | 4 cut(s) | 11, 110, 217, 619 |
| FokI | GGATG | 1 cut(s) | 28 |
| FspBI | CTAG | 5 cut(s) | 90, 195, 452, 596, 681 |
| HaeIII | GGCC | 1 cut(s) | 227 |
| HapII | CCGG | 1 cut(s) | 420 |
| HgaI | GACGC | 3 cut(s) | 272, 356, 407 |
| Hin1I | GRCGYC | 1 cut(s) | 399 |
| Hin1II | CATG | 4 cut(s) | 15, 114, 221, 623 |
| HincII | GTYRAC | 1 cut(s) | 139 |
| HindII | GTYRAC | 1 cut(s) | 139 |
| HinfI | GANTC | 1 cut(s) | 281 |
| HpaII | CCGG | 1 cut(s) | 420 |
| HphI | GGTGA | 1 cut(s) | 67 |
| Hpy166II | GTNNAC | 2 cut(s) | 139, 737 |
| Hpy188I | TCNGA | 2 cut(s) | 280, 508 |
| Hpy188III | TCNNGA | 1 cut(s) | 696 |
| Hpy8I | GTNNAC | 2 cut(s) | 139, 737 |
| HpyAV | CCTTC | 1 cut(s) | 725 |
| HpyCH4III | ACNGT | 5 cut(s) | 63, 290, 387, 411, 485 |
| HpyCH4V | TGCA | 3 cut(s) | 527, 668, 743 |
| HpyF3I | CTNAG | 3 cut(s) | 507, 587, 672 |
| Hsp92I | GRCGYC | 1 cut(s) | 399 |
| Hsp92II | CATG | 4 cut(s) | 15, 114, 221, 623 |
| Kzo9I | GATC | 1 cut(s) | 32 |
| LmnI | GCTCC | 1 cut(s) | 185 |
| LpnPI | CCDG | 8 cut(s) | 258, 318, 333, 433, 552, 570, 599, 637 |
| LweI | GCATC | 2 cut(s) | 181, 655 |
| MaeI | CTAG | 5 cut(s) | 90, 195, 452, 596, 681 |
| MaeIII | GTNAC | 3 cut(s) | 55, 344, 431 |
| MalI | GATC | 1 cut(s) | 34 |
| MboI | GATC | 1 cut(s) | 32 |
| MboII | GAAGA | 2 cut(s) | 527, 592 |
| MflI | RGATCY | 1 cut(s) | 32 |
| MhlI | GDGCHC | 1 cut(s) | 680 |
| MluCI | AATT | 4 cut(s) | 47, 71, 124, 615 |
| MnlI | CCTC | 5 cut(s) | 217, 241, 565, 571, 720 |
| MseI | TTAA | 2 cut(s) | 239, 470 |
| MspCI | CTTAAG | 1 cut(s) | 238 |
| MspI | CCGG | 1 cut(s) | 420 |
| MspR9I | CCNGG | 1 cut(s) | 420 |
| NciI | CCSGG | 1 cut(s) | 420 |
| NdeII | GATC | 1 cut(s) | 32 |
| NlaIII | CATG | 4 cut(s) | 15, 114, 221, 623 |
| NlaIV | GGNNCC | 1 cut(s) | 167 |
| NmuCI | GTSAC | 3 cut(s) | 55, 344, 431 |
| PceI | AGGCCT | 1 cut(s) | 227 |
| PfeI | GAWTC | 1 cut(s) | 281 |
| PsiI | TTATAA | 1 cut(s) | 465 |
| PspN4I | GGNNCC | 1 cut(s) | 167 |
| PspPI | GGNCC | 1 cut(s) | 166 |
| PsuI | RGATCY | 1 cut(s) | 32 |
| RsaI | GTAC | 2 cut(s) | 121, 738 |
| RsaNI | GTAC | 2 cut(s) | 120, 737 |
| SaqAI | TTAA | 2 cut(s) | 239, 470 |
| Sau3AI | GATC | 1 cut(s) | 32 |
| Sau96I | GGNCC | 1 cut(s) | 166 |
| ScrFI | CCNGG | 1 cut(s) | 420 |
| SduI | GDGCHC | 1 cut(s) | 680 |
| SetI | ASST | 7 cut(s) | 190, 277, 322, 443, 559, 736, 742 |
| SfaNI | GCATC | 2 cut(s) | 181, 655 |
| SinI | GGWCC | 1 cut(s) | 166 |
| SmlI | CTYRAG | 1 cut(s) | 238 |
| SmoI | CTYRAG | 1 cut(s) | 238 |
| Sse9I | AATT | 4 cut(s) | 47, 71, 124, 615 |
| SseBI | AGGCCT | 1 cut(s) | 227 |
| SsiI | CCGC | 1 cut(s) | 23 |
| SspMI | CTAG | 5 cut(s) | 90, 195, 452, 596, 681 |
| StuI | AGGCCT | 1 cut(s) | 227 |
| StyD4I | CCNGG | 1 cut(s) | 418 |
| StyI | CCWWGG | 1 cut(s) | 78 |
| TaaI | ACNGT | 5 cut(s) | 63, 290, 387, 411, 485 |
| TaqI | TCGA | 1 cut(s) | 393 |
| TasI | AATT | 4 cut(s) | 47, 71, 124, 615 |
| TatI | WGTACW | 1 cut(s) | 119 |
| TfiI | GAWTC | 1 cut(s) | 281 |
| Tru1I | TTAA | 2 cut(s) | 239, 470 |
| Tru9I | TTAA | 2 cut(s) | 239, 470 |
| TseFI | GTSAC | 3 cut(s) | 55, 344, 431 |
| Tsp45I | GTSAC | 3 cut(s) | 55, 344, 431 |
| TspDTI | ATGAA | 2 cut(s) | 342, 608 |
| TspGWI | ACGGA | 1 cut(s) | 139 |
| Vha464I | CTTAAG | 1 cut(s) | 238 |
| VpaK11BI | GGWCC | 1 cut(s) | 166 |
| XapI | RAATTY | 2 cut(s) | 71, 615 |
| XspI | CTAG | 5 cut(s) | 90, 195, 452, 596, 681 |