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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 129 |
| AclWI | GGATC | 3 cut(s) | 335, 348, 479 |
| AcoI | YGGCCR | 1 cut(s) | 320 |
| AcsI | RAATTY | 1 cut(s) | 415 |
| AfaI | GTAC | 1 cut(s) | 188 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 191, 367 |
| AgsI | TTSAA | 1 cut(s) | 124 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 62, 94 |
| AluBI | AGCT | 3 cut(s) | 8, 62, 271 |
| AluI | AGCT | 3 cut(s) | 8, 62, 271 |
| Alw26I | GTCTC | 1 cut(s) | 24 |
| AlwI | GGATC | 3 cut(s) | 335, 348, 479 |
| AoxI | GGCC | 1 cut(s) | 320 |
| ApoI | RAATTY | 1 cut(s) | 415 |
| AseI | ATTAAT | 1 cut(s) | 426 |
| AspS9I | GGNCC | 2 cut(s) | 109, 386 |
| AsuHPI | GGTGA | 3 cut(s) | 68, 174, 647 |
| AvaII | GGWCC | 2 cut(s) | 109, 386 |
| BamHI | GGATCC | 1 cut(s) | 340 |
| BauI | CACGAG | 1 cut(s) | 447 |
| BccI | CCATC | 4 cut(s) | 29, 194, 551, 626 |
| BcoDI | GTCTC | 1 cut(s) | 24 |
| BfaI | CTAG | 1 cut(s) | 177 |
| Bme18I | GGWCC | 2 cut(s) | 109, 386 |
| BmgT120I | GGNCC | 2 cut(s) | 109, 386 |
| BmiI | GGNNCC | 2 cut(s) | 342, 387 |
| BmsI | GCATC | 3 cut(s) | 142, 502, 524 |
| BpmI | CTGGAG | 2 cut(s) | 6, 210 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 208, 238, 582, 612 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 191, 367 |
| Bse1I | ACTGG | 2 cut(s) | 307, 389 |
| Bse3DI | GCAATG | 1 cut(s) | 578 |
| BseGI | GGATG | 3 cut(s) | 52, 91, 266 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 191, 367 |
| BseMI | GCAATG | 1 cut(s) | 578 |
| BseMII | CTCAG | 1 cut(s) | 108 |
| BseNI | ACTGG | 2 cut(s) | 307, 389 |
| BsgI | GTGCAG | 1 cut(s) | 204 |
| BshFI | GGCC | 1 cut(s) | 322 |
| BsiSI | CCGG | 1 cut(s) | 323 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 191, 367 |
| BsmAI | GTCTC | 1 cut(s) | 24 |
| BsnI | GGCC | 1 cut(s) | 322 |
| Bsp143I | GATC | 3 cut(s) | 340, 451, 484 |
| BspANI | GGCC | 1 cut(s) | 322 |
| BspCNI | CTCAG | 1 cut(s) | 109 |
| BspHI | TCATGA | 1 cut(s) | 607 |
| BspLI | GGNNCC | 2 cut(s) | 342, 387 |
| BspPI | GGATC | 3 cut(s) | 335, 348, 479 |
| BsrDI | GCAATG | 1 cut(s) | 578 |
| BsrI | ACTGG | 2 cut(s) | 307, 389 |
| BssMI | GATC | 3 cut(s) | 340, 451, 484 |
| BssSI | CACGAG | 1 cut(s) | 447 |
| Bst2BI | CACGAG | 1 cut(s) | 447 |
| Bst4CI | ACNGT | 3 cut(s) | 186, 352, 568 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 208 |
| BstDEI | CTNAG | 2 cut(s) | 9, 117 |
| BstF5I | GGATG | 3 cut(s) | 52, 91, 266 |
| BstKTI | GATC | 3 cut(s) | 343, 454, 487 |
| BstMAI | GTCTC | 1 cut(s) | 24 |
| BstMBI | GATC | 3 cut(s) | 340, 451, 484 |
| BstX2I | RGATCY | 1 cut(s) | 340 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 396 |
| BstYI | RGATCY | 1 cut(s) | 340 |
| BsuRI | GGCC | 1 cut(s) | 322 |
| BtsCI | GGATG | 3 cut(s) | 52, 91, 266 |
| BtsI | GCAGTG | 1 cut(s) | 216 |
| BtsIMutI | CAGTG | 1 cut(s) | 216 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 208 |
| CciI | TCATGA | 1 cut(s) | 607 |
| Cfr13I | GGNCC | 2 cut(s) | 109, 386 |
| Csp6I | GTAC | 1 cut(s) | 187 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 299, 334 |
| CviAII | CATG | 5 cut(s) | 53, 211, 479, 489, 608 |
| CviJI | RGCY | 6 cut(s) | 8, 62, 271, 322, 329, 445 |
| CviKI_1 | RGCY | 6 cut(s) | 8, 62, 271, 322, 329, 445 |
| CviQI | GTAC | 1 cut(s) | 187 |
| DdeI | CTNAG | 2 cut(s) | 9, 117 |
| DpnI | GATC | 3 cut(s) | 342, 453, 486 |
| DpnII | GATC | 3 cut(s) | 340, 451, 484 |
| EaeI | YGGCCR | 1 cut(s) | 320 |
| Eco47I | GGWCC | 2 cut(s) | 109, 386 |
| EcoT22I | ATGCAT | 2 cut(s) | 157, 517 |
| FaeI | CATG | 5 cut(s) | 56, 214, 482, 492, 611 |
| FatI | CATG | 5 cut(s) | 52, 210, 478, 488, 607 |
| FblI | GTMKAC | 1 cut(s) | 129 |
| FokI | GGATG | 3 cut(s) | 59, 98, 273 |
| FspBI | CTAG | 1 cut(s) | 177 |
| GsuI | CTGGAG | 2 cut(s) | 6, 210 |
| HaeIII | GGCC | 1 cut(s) | 322 |
| HapII | CCGG | 1 cut(s) | 323 |
| Hin1II | CATG | 5 cut(s) | 56, 214, 482, 492, 611 |
| HincII | GTYRAC | 1 cut(s) | 147 |
| HindII | GTYRAC | 1 cut(s) | 147 |
| HindIII | AAGCTT | 1 cut(s) | 60 |
| HinfI | GANTC | 2 cut(s) | 280, 561 |
| HpaII | CCGG | 1 cut(s) | 323 |
| HphI | GGTGA | 3 cut(s) | 68, 174, 647 |
| Hpy166II | GTNNAC | 5 cut(s) | 130, 147, 173, 182, 358 |
| Hpy188III | TCNNGA | 6 cut(s) | 23, 227, 298, 449, 544, 608 |
| Hpy8I | GTNNAC | 5 cut(s) | 130, 147, 173, 182, 358 |
| HpyAV | CCTTC | 1 cut(s) | 376 |
| HpyCH4III | ACNGT | 3 cut(s) | 186, 352, 568 |
| HpyF3I | CTNAG | 2 cut(s) | 9, 117 |
| Hsp92II | CATG | 5 cut(s) | 56, 214, 482, 492, 611 |
| Kzo9I | GATC | 3 cut(s) | 340, 451, 484 |
| LweI | GCATC | 3 cut(s) | 142, 502, 524 |
| MaeI | CTAG | 1 cut(s) | 177 |
| MalI | GATC | 3 cut(s) | 342, 453, 486 |
| MboI | GATC | 3 cut(s) | 340, 451, 484 |
| MboII | GAAGA | 6 cut(s) | 44, 107, 110, 248, 251, 254 |
| MfeI | CAATTG | 1 cut(s) | 394 |
| MflI | RGATCY | 1 cut(s) | 340 |
| MluCI | AATT | 2 cut(s) | 394, 415 |
| Mph1103I | ATGCAT | 2 cut(s) | 157, 517 |
| MseI | TTAA | 3 cut(s) | 405, 426, 570 |
| MslI | CAYNNNNRTG | 1 cut(s) | 612 |
| MspI | CCGG | 1 cut(s) | 323 |
| MunI | CAATTG | 1 cut(s) | 394 |
| NdeII | GATC | 3 cut(s) | 340, 451, 484 |
| NlaIII | CATG | 5 cut(s) | 56, 214, 482, 492, 611 |
| NlaIV | GGNNCC | 2 cut(s) | 342, 387 |
| NsiI | ATGCAT | 2 cut(s) | 157, 517 |
| PagI | TCATGA | 1 cut(s) | 607 |
| PfeI | GAWTC | 2 cut(s) | 280, 561 |
| PshBI | ATTAAT | 1 cut(s) | 426 |
| PspN4I | GGNNCC | 2 cut(s) | 342, 387 |
| PspPI | GGNCC | 2 cut(s) | 109, 386 |
| PsuI | RGATCY | 1 cut(s) | 340 |
| RsaI | GTAC | 1 cut(s) | 188 |
| RsaNI | GTAC | 1 cut(s) | 187 |
| RseI | CAYNNNNRTG | 1 cut(s) | 612 |
| SaqAI | TTAA | 3 cut(s) | 405, 426, 570 |
| Sau3AI | GATC | 3 cut(s) | 340, 451, 484 |
| Sau96I | GGNCC | 2 cut(s) | 109, 386 |
| SetI | ASST | 8 cut(s) | 10, 64, 118, 178, 226, 273, 465, 600 |
| SfaNI | GCATC | 3 cut(s) | 142, 502, 524 |
| SinI | GGWCC | 2 cut(s) | 109, 386 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 612 |
| Sse9I | AATT | 2 cut(s) | 394, 415 |
| SspMI | CTAG | 1 cut(s) | 177 |
| TaaI | ACNGT | 3 cut(s) | 186, 352, 568 |
| TaqI | TCGA | 4 cut(s) | 93, 105, 252, 528 |
| TaqII | GACCGA | 1 cut(s) | 126 |
| TasI | AATT | 2 cut(s) | 394, 415 |
| TfiI | GAWTC | 2 cut(s) | 280, 561 |
| Tru1I | TTAA | 3 cut(s) | 405, 426, 570 |
| Tru9I | TTAA | 3 cut(s) | 405, 426, 570 |
| TscAI | CASTG | 1 cut(s) | 223 |
| TspDTI | ATGAA | 3 cut(s) | 45, 63, 596 |
| TspRI | CASTG | 1 cut(s) | 223 |
| VpaK11BI | GGWCC | 2 cut(s) | 109, 386 |
| VspI | ATTAAT | 1 cut(s) | 426 |
| XapI | RAATTY | 1 cut(s) | 415 |
| XmiI | GTMKAC | 1 cut(s) | 129 |
| XspI | CTAG | 1 cut(s) | 177 |
| Zsp2I | ATGCAT | 2 cut(s) | 157, 517 |