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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 379 |
| AcsI | RAATTY | 3 cut(s) | 83, 168, 425 |
| AfaI | GTAC | 3 cut(s) | 267, 333, 472 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 138 |
| AflII | CTTAAG | 1 cut(s) | 179 |
| AgsI | TTSAA | 1 cut(s) | 461 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 401, 433 |
| AluBI | AGCT | 2 cut(s) | 220, 446 |
| AluI | AGCT | 2 cut(s) | 220, 446 |
| Alw26I | GTCTC | 1 cut(s) | 482 |
| Ama87I | CYCGRG | 1 cut(s) | 479 |
| AoxI | GGCC | 1 cut(s) | 256 |
| ApeKI | GCWGC | 2 cut(s) | 214, 217 |
| ApoI | RAATTY | 3 cut(s) | 83, 168, 425 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 9, 391 |
| AvaI | CYCGRG | 1 cut(s) | 479 |
| BbvI | GCAGC | 2 cut(s) | 226, 229 |
| BccI | CCATC | 1 cut(s) | 113 |
| BclI | TGATCA | 3 cut(s) | 190, 196, 373 |
| BcoDI | GTCTC | 1 cut(s) | 482 |
| BfmI | CTRYAG | 1 cut(s) | 252 |
| BfrI | CTTAAG | 1 cut(s) | 179 |
| BisI | GCNGC | 2 cut(s) | 215, 218 |
| BlsI | GCNGC | 2 cut(s) | 216, 219 |
| BmcAI | AGTACT | 1 cut(s) | 472 |
| BmeT110I | CYCGRG | 1 cut(s) | 479 |
| BmsI | GCATC | 3 cut(s) | 31, 93, 307 |
| BoxI | GACNNNNGTC | 1 cut(s) | 181 |
| BpuEI | CTTGAG | 1 cut(s) | 92 |
| BsaBI | GATNNNNATC | 1 cut(s) | 195 |
| BsaWI | WCCGGW | 1 cut(s) | 13 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 138 |
| Bse8I | GATNNNNATC | 1 cut(s) | 195 |
| BseGI | GGATG | 2 cut(s) | 46, 108 |
| BseJI | GATNNNNATC | 1 cut(s) | 195 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 138 |
| BseXI | GCAGC | 2 cut(s) | 226, 229 |
| BshFI | GGCC | 1 cut(s) | 258 |
| BsiHKCI | CYCGRG | 1 cut(s) | 479 |
| BsiSI | CCGG | 1 cut(s) | 14 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 138 |
| BsmAI | GTCTC | 1 cut(s) | 482 |
| BsnI | GGCC | 1 cut(s) | 258 |
| BsoBI | CYCGRG | 1 cut(s) | 479 |
| Bsp1407I | TGTACA | 1 cut(s) | 265 |
| Bsp143I | GATC | 4 cut(s) | 190, 196, 260, 373 |
| BspANI | GGCC | 1 cut(s) | 258 |
| BspHI | TCATGA | 1 cut(s) | 193 |
| BspTI | CTTAAG | 1 cut(s) | 179 |
| BsrGI | TGTACA | 1 cut(s) | 265 |
| BssMI | GATC | 4 cut(s) | 190, 196, 260, 373 |
| Bst4CI | ACNGT | 2 cut(s) | 146, 320 |
| Bst6I | CTCTTC | 1 cut(s) | 351 |
| BstAFI | CTTAAG | 1 cut(s) | 179 |
| BstAUI | TGTACA | 1 cut(s) | 265 |
| BstDEI | CTNAG | 1 cut(s) | 447 |
| BstF5I | GGATG | 2 cut(s) | 46, 108 |
| BstKTI | GATC | 4 cut(s) | 193, 199, 263, 376 |
| BstMAI | GTCTC | 1 cut(s) | 482 |
| BstMBI | GATC | 4 cut(s) | 190, 196, 260, 373 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 103 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 181 |
| BstSFI | CTRYAG | 1 cut(s) | 252 |
| BstV1I | GCAGC | 2 cut(s) | 226, 229 |
| BsuRI | GGCC | 1 cut(s) | 258 |
| BtsCI | GGATG | 2 cut(s) | 46, 108 |
| CciI | TCATGA | 1 cut(s) | 193 |
| Csp6I | GTAC | 3 cut(s) | 266, 332, 471 |
| CviAII | CATG | 2 cut(s) | 194, 203 |
| CviJI | RGCY | 8 cut(s) | 79, 97, 220, 244, 258, 293, 347, 446 |
| CviKI_1 | RGCY | 8 cut(s) | 79, 97, 220, 244, 258, 293, 347, 446 |
| CviQI | GTAC | 3 cut(s) | 266, 332, 471 |
| DdeI | CTNAG | 1 cut(s) | 447 |
| DpnI | GATC | 4 cut(s) | 192, 198, 262, 375 |
| DpnII | GATC | 4 cut(s) | 190, 196, 260, 373 |
| Eam1104I | CTCTTC | 1 cut(s) | 351 |
| EarI | CTCTTC | 1 cut(s) | 351 |
| Eco88I | CYCGRG | 1 cut(s) | 479 |
| FaeI | CATG | 2 cut(s) | 197, 206 |
| FaiI | YATR | 6 cut(s) | 100, 189, 195, 204, 337, 351 |
| FatI | CATG | 2 cut(s) | 193, 202 |
| FbaI | TGATCA | 3 cut(s) | 190, 196, 373 |
| Fnu4HI | GCNGC | 2 cut(s) | 215, 218 |
| FokI | GGATG | 2 cut(s) | 53, 115 |
| Fsp4HI | GCNGC | 2 cut(s) | 215, 218 |
| GluI | GCNGC | 2 cut(s) | 215, 218 |
| HaeIII | GGCC | 1 cut(s) | 258 |
| HapII | CCGG | 1 cut(s) | 14 |
| Hin1II | CATG | 2 cut(s) | 197, 206 |
| HinfI | GANTC | 1 cut(s) | 482 |
| HpaII | CCGG | 1 cut(s) | 14 |
| Hpy188I | TCNGA | 2 cut(s) | 49, 487 |
| Hpy188III | TCNNGA | 5 cut(s) | 116, 151, 194, 323, 479 |
| HpyCH4III | ACNGT | 2 cut(s) | 146, 320 |
| HpyCH4IV | ACGT | 1 cut(s) | 379 |
| HpyCH4V | TGCA | 6 cut(s) | 106, 165, 214, 286, 298, 415 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 103 |
| HpyF3I | CTNAG | 1 cut(s) | 447 |
| HpySE526I | ACGT | 1 cut(s) | 379 |
| Hsp92II | CATG | 2 cut(s) | 197, 206 |
| Ksp22I | TGATCA | 3 cut(s) | 190, 196, 373 |
| Kzo9I | GATC | 4 cut(s) | 190, 196, 260, 373 |
| LmnI | GCTCC | 1 cut(s) | 134 |
| LpnPI | CCDG | 5 cut(s) | 23, 27, 129, 264, 450 |
| Lsp1109I | GCAGC | 2 cut(s) | 226, 229 |
| LweI | GCATC | 3 cut(s) | 31, 93, 307 |
| MaeII | ACGT | 1 cut(s) | 379 |
| MaeIII | GTNAC | 1 cut(s) | 438 |
| MalI | GATC | 4 cut(s) | 192, 198, 262, 375 |
| MboI | GATC | 4 cut(s) | 190, 196, 260, 373 |
| MboII | GAAGA | 3 cut(s) | 17, 32, 368 |
| MfeI | CAATTG | 1 cut(s) | 269 |
| MluCI | AATT | 6 cut(s) | 83, 168, 269, 391, 398, 425 |
| MlyI | GAGTC | 1 cut(s) | 491 |
| MnlI | CCTC | 2 cut(s) | 87, 337 |
| MroXI | GAANNNNTTC | 2 cut(s) | 9, 391 |
| MseI | TTAA | 6 cut(s) | 180, 209, 312, 362, 453, 502 |
| MslI | CAYNNNNRTG | 1 cut(s) | 303 |
| MspCI | CTTAAG | 1 cut(s) | 179 |
| MspI | CCGG | 1 cut(s) | 14 |
| MunI | CAATTG | 1 cut(s) | 269 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 103 |
| NdeII | GATC | 4 cut(s) | 190, 196, 260, 373 |
| NlaIII | CATG | 2 cut(s) | 197, 206 |
| PaeR7I | CTCGAG | 1 cut(s) | 479 |
| PagI | TCATGA | 1 cut(s) | 193 |
| PdmI | GAANNNNTTC | 2 cut(s) | 9, 391 |
| PkrI | GCNGC | 2 cut(s) | 216, 219 |
| PleI | GAGTC | 1 cut(s) | 490 |
| PpsI | GAGTC | 1 cut(s) | 490 |
| PshAI | GACNNNNGTC | 1 cut(s) | 181 |
| Psp1406I | AACGTT | 1 cut(s) | 379 |
| RsaI | GTAC | 3 cut(s) | 267, 333, 472 |
| RsaNI | GTAC | 3 cut(s) | 266, 332, 471 |
| RseI | CAYNNNNRTG | 1 cut(s) | 303 |
| SaqAI | TTAA | 6 cut(s) | 180, 209, 312, 362, 453, 502 |
| SatI | GCNGC | 2 cut(s) | 215, 218 |
| Sau3AI | GATC | 4 cut(s) | 190, 196, 260, 373 |
| ScaI | AGTACT | 1 cut(s) | 472 |
| SchI | GAGTC | 1 cut(s) | 491 |
| SetI | ASST | 7 cut(s) | 55, 62, 113, 222, 253, 382, 448 |
| SfaNI | GCATC | 3 cut(s) | 31, 93, 307 |
| SfcI | CTRYAG | 1 cut(s) | 252 |
| Sfr274I | CTCGAG | 1 cut(s) | 479 |
| SlaI | CTCGAG | 1 cut(s) | 479 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 303 |
| SmlI | CTYRAG | 3 cut(s) | 71, 179, 479 |
| SmoI | CTYRAG | 3 cut(s) | 71, 179, 479 |
| Sse9I | AATT | 6 cut(s) | 83, 168, 269, 391, 398, 425 |
| SspI | AATATT | 1 cut(s) | 136 |
| TaaI | ACNGT | 2 cut(s) | 146, 320 |
| TaiI | ACGT | 1 cut(s) | 382 |
| TaqI | TCGA | 3 cut(s) | 342, 432, 480 |
| TasI | AATT | 6 cut(s) | 83, 168, 269, 391, 398, 425 |
| TatI | WGTACW | 2 cut(s) | 265, 470 |
| Tru1I | TTAA | 6 cut(s) | 180, 209, 312, 362, 453, 502 |
| Tru9I | TTAA | 6 cut(s) | 180, 209, 312, 362, 453, 502 |
| TseI | GCWGC | 2 cut(s) | 214, 217 |
| TspDTI | ATGAA | 4 cut(s) | 45, 170, 294, 504 |
| Vha464I | CTTAAG | 1 cut(s) | 179 |
| XapI | RAATTY | 3 cut(s) | 83, 168, 425 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 87 |
| XhoI | CTCGAG | 1 cut(s) | 479 |
| XmnI | GAANNNNTTC | 2 cut(s) | 9, 391 |
| ZrmI | AGTACT | 1 cut(s) | 472 |