Transposase-associated domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transpos_assoc | PF13963 | 3 - 77 | 1e-16 | Transposase-associated domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 84 |
| AclWI | GGATC | 2 cut(s) | 185, 198 |
| AcsI | RAATTY | 1 cut(s) | 123 |
| AgsI | TTSAA | 2 cut(s) | 71, 175 |
| AjnI | CCWGG | 1 cut(s) | 11 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 1 cut(s) | 22 |
| AluI | AGCT | 1 cut(s) | 22 |
| Alw21I | GWGCWC | 1 cut(s) | 171 |
| AlwI | GGATC | 2 cut(s) | 185, 198 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 245 |
| ApoI | RAATTY | 1 cut(s) | 123 |
| AspLEI | GCGC | 1 cut(s) | 84 |
| AsuC2I | CCSGG | 1 cut(s) | 137 |
| AsuHPI | GGTGA | 2 cut(s) | 172, 239 |
| BamHI | GGATCC | 1 cut(s) | 190 |
| Bbv12I | GWGCWC | 1 cut(s) | 171 |
| BccI | CCATC | 3 cut(s) | 92, 176, 274 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 111, 145 |
| BciT130I | CCWGG | 1 cut(s) | 13 |
| BclI | TGATCA | 2 cut(s) | 105, 220 |
| BcnI | CCSGG | 1 cut(s) | 137 |
| Bme1390I | CCNGG | 2 cut(s) | 13, 137 |
| BmiI | GGNNCC | 1 cut(s) | 192 |
| BmrFI | CCNGG | 2 cut(s) | 13, 137 |
| BpuMI | CCSGG | 1 cut(s) | 137 |
| BsaJI | CCNNGG | 1 cut(s) | 12 |
| Bse3DI | GCAATG | 1 cut(s) | 77 |
| BseBI | CCWGG | 1 cut(s) | 13 |
| BseDI | CCNNGG | 1 cut(s) | 12 |
| BseGI | GGATG | 1 cut(s) | 187 |
| BseMI | GCAATG | 1 cut(s) | 77 |
| Bsh1236I | CGCG | 1 cut(s) | 84 |
| BsiHKAI | GWGCWC | 1 cut(s) | 171 |
| BsiSI | CCGG | 1 cut(s) | 136 |
| Bsp1286I | GDGCHC | 1 cut(s) | 171 |
| Bsp143I | GATC | 3 cut(s) | 105, 190, 220 |
| BspFNI | CGCG | 1 cut(s) | 84 |
| BspLI | GGNNCC | 1 cut(s) | 192 |
| BspPI | GGATC | 2 cut(s) | 185, 198 |
| BsrDI | GCAATG | 1 cut(s) | 77 |
| BssECI | CCNNGG | 1 cut(s) | 12 |
| BssMI | GATC | 3 cut(s) | 105, 190, 220 |
| Bst2UI | CCWGG | 1 cut(s) | 13 |
| Bst4CI | ACNGT | 1 cut(s) | 160 |
| BstC8I | GCNNGC | 1 cut(s) | 56 |
| BstF5I | GGATG | 1 cut(s) | 187 |
| BstFNI | CGCG | 1 cut(s) | 84 |
| BstHHI | GCGC | 1 cut(s) | 84 |
| BstKTI | GATC | 3 cut(s) | 108, 193, 223 |
| BstMBI | GATC | 3 cut(s) | 105, 190, 220 |
| BstNI | CCWGG | 1 cut(s) | 13 |
| BstNSI | RCATGY | 1 cut(s) | 58 |
| BstSCI | CCNGG | 2 cut(s) | 11, 135 |
| BstUI | CGCG | 1 cut(s) | 84 |
| BstX2I | RGATCY | 1 cut(s) | 190 |
| BstYI | RGATCY | 1 cut(s) | 190 |
| BtsCI | GGATG | 1 cut(s) | 187 |
| BtsIMutI | CAGTG | 1 cut(s) | 36 |
| Cac8I | GCNNGC | 1 cut(s) | 56 |
| CaiI | CAGNNNCTG | 1 cut(s) | 245 |
| CfoI | GCGC | 1 cut(s) | 84 |
| CviAII | CATG | 4 cut(s) | 55, 117, 187, 224 |
| CviJI | RGCY | 4 cut(s) | 22, 103, 233, 244 |
| CviKI_1 | RGCY | 4 cut(s) | 22, 103, 233, 244 |
| DpnI | GATC | 3 cut(s) | 107, 192, 222 |
| DpnII | GATC | 3 cut(s) | 105, 190, 220 |
| EcoRII | CCWGG | 1 cut(s) | 11 |
| EcoT22I | ATGCAT | 1 cut(s) | 60 |
| FaeI | CATG | 4 cut(s) | 58, 120, 190, 227 |
| FaiI | YATR | 9 cut(s) | 45, 56, 60, 118, 188, 201, 209, 225, 276 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 155, 187 |
| FatI | CATG | 4 cut(s) | 54, 116, 186, 223 |
| FbaI | TGATCA | 2 cut(s) | 105, 220 |
| FokI | GGATG | 1 cut(s) | 194 |
| GlaI | GCGC | 1 cut(s) | 83 |
| HapII | CCGG | 1 cut(s) | 136 |
| HhaI | GCGC | 1 cut(s) | 84 |
| Hin1II | CATG | 4 cut(s) | 58, 120, 190, 227 |
| Hin6I | GCGC | 1 cut(s) | 82 |
| HinP1I | GCGC | 1 cut(s) | 82 |
| HinfI | GANTC | 1 cut(s) | 140 |
| HpaII | CCGG | 1 cut(s) | 136 |
| HphI | GGTGA | 2 cut(s) | 172, 239 |
| HpyAV | CCTTC | 2 cut(s) | 157, 169 |
| HpyCH4III | ACNGT | 1 cut(s) | 160 |
| HpyCH4V | TGCA | 2 cut(s) | 58, 132 |
| Hsp92II | CATG | 4 cut(s) | 58, 120, 190, 227 |
| HspAI | GCGC | 1 cut(s) | 82 |
| Ksp22I | TGATCA | 2 cut(s) | 105, 220 |
| Kzo9I | GATC | 3 cut(s) | 105, 190, 220 |
| LmnI | GCTCC | 1 cut(s) | 166 |
| LpnPI | CCDG | 7 cut(s) | 25, 75, 149, 165, 207, 252, 258 |
| MalI | GATC | 3 cut(s) | 107, 192, 222 |
| MboI | GATC | 3 cut(s) | 105, 190, 220 |
| MflI | RGATCY | 1 cut(s) | 190 |
| MhlI | GDGCHC | 1 cut(s) | 171 |
| MluCI | AATT | 2 cut(s) | 61, 123 |
| MnlI | CCTC | 2 cut(s) | 196, 223 |
| Mph1103I | ATGCAT | 1 cut(s) | 60 |
| MseI | TTAA | 1 cut(s) | 286 |
| MspI | CCGG | 1 cut(s) | 136 |
| MspR9I | CCNGG | 2 cut(s) | 13, 137 |
| MvaI | CCWGG | 1 cut(s) | 13 |
| MvnI | CGCG | 1 cut(s) | 84 |
| NciI | CCSGG | 1 cut(s) | 137 |
| NdeII | GATC | 3 cut(s) | 105, 190, 220 |
| NlaIII | CATG | 4 cut(s) | 58, 120, 190, 227 |
| NlaIV | GGNNCC | 1 cut(s) | 192 |
| NsiI | ATGCAT | 1 cut(s) | 60 |
| NspI | RCATGY | 1 cut(s) | 58 |
| PaeI | GCATGC | 1 cut(s) | 58 |
| PfeI | GAWTC | 1 cut(s) | 140 |
| Psp6I | CCWGG | 1 cut(s) | 11 |
| PspGI | CCWGG | 1 cut(s) | 11 |
| PspN4I | GGNNCC | 1 cut(s) | 192 |
| PstNI | CAGNNNCTG | 1 cut(s) | 245 |
| PsuI | RGATCY | 1 cut(s) | 190 |
| SaqAI | TTAA | 1 cut(s) | 286 |
| Sau3AI | GATC | 3 cut(s) | 105, 190, 220 |
| ScrFI | CCNGG | 2 cut(s) | 13, 137 |
| SduI | GDGCHC | 1 cut(s) | 171 |
| SetI | ASST | 4 cut(s) | 14, 24, 32, 180 |
| SphI | GCATGC | 1 cut(s) | 58 |
| Sse9I | AATT | 2 cut(s) | 61, 123 |
| StyD4I | CCNGG | 2 cut(s) | 11, 135 |
| TaaI | ACNGT | 1 cut(s) | 160 |
| TaqI | TCGA | 1 cut(s) | 121 |
| TasI | AATT | 2 cut(s) | 61, 123 |
| TfiI | GAWTC | 1 cut(s) | 140 |
| Tru1I | TTAA | 1 cut(s) | 286 |
| Tru9I | TTAA | 1 cut(s) | 286 |
| TscAI | CASTG | 1 cut(s) | 43 |
| TspDTI | ATGAA | 1 cut(s) | 132 |
| TspRI | CASTG | 1 cut(s) | 43 |
| XapI | RAATTY | 1 cut(s) | 123 |
| XceI | RCATGY | 1 cut(s) | 58 |
| Zsp2I | ATGCAT | 1 cut(s) | 60 |