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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 41 |
| AclWI | GGATC | 3 cut(s) | 99, 184, 425 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 117, 276 |
| AflIII | ACRYGT | 2 cut(s) | 18, 308 |
| AgsI | TTSAA | 2 cut(s) | 428, 623 |
| AjnI | CCWGG | 1 cut(s) | 55 |
| AluBI | AGCT | 2 cut(s) | 398, 499 |
| AluI | AGCT | 2 cut(s) | 398, 499 |
| AlwI | GGATC | 3 cut(s) | 99, 184, 425 |
| ApeKI | GCWGC | 2 cut(s) | 77, 80 |
| AspS9I | GGNCC | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 3 cut(s) | 244, 337, 512 |
| AvaII | GGWCC | 1 cut(s) | 131 |
| BaeGI | GKGCMC | 1 cut(s) | 375 |
| BbvI | GCAGC | 2 cut(s) | 64, 92 |
| BccI | CCATC | 1 cut(s) | 553 |
| BciT130I | CCWGG | 1 cut(s) | 57 |
| BciVI | GTATCC | 1 cut(s) | 499 |
| BclI | TGATCA | 1 cut(s) | 517 |
| BfaI | CTAG | 3 cut(s) | 257, 264, 500 |
| BfmI | CTRYAG | 2 cut(s) | 78, 435 |
| BfuI | GTATCC | 1 cut(s) | 499 |
| BisI | GCNGC | 2 cut(s) | 78, 81 |
| BlsI | GCNGC | 2 cut(s) | 79, 82 |
| Bme1390I | CCNGG | 1 cut(s) | 57 |
| Bme18I | GGWCC | 1 cut(s) | 131 |
| BmgT120I | GGNCC | 1 cut(s) | 131 |
| BmiI | GGNNCC | 1 cut(s) | 385 |
| BmrFI | CCNGG | 1 cut(s) | 57 |
| BmsI | GCATC | 3 cut(s) | 128, 238, 571 |
| BpuEI | CTTGAG | 2 cut(s) | 133, 427 |
| BsaBI | GATNNNNATC | 1 cut(s) | 279 |
| BsaJI | CCNNGG | 1 cut(s) | 55 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 117, 276 |
| Bse1I | ACTGG | 1 cut(s) | 485 |
| Bse3DI | GCAATG | 1 cut(s) | 539 |
| Bse8I | GATNNNNATC | 1 cut(s) | 279 |
| BseBI | CCWGG | 1 cut(s) | 57 |
| BseDI | CCNNGG | 1 cut(s) | 55 |
| BseGI | GGATG | 1 cut(s) | 51 |
| BseJI | GATNNNNATC | 1 cut(s) | 279 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 117, 276 |
| BseMI | GCAATG | 1 cut(s) | 539 |
| BseMII | CTCAG | 1 cut(s) | 564 |
| BseNI | ACTGG | 1 cut(s) | 485 |
| BseSI | GKGCMC | 1 cut(s) | 375 |
| BseXI | GCAGC | 2 cut(s) | 64, 92 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 117, 276 |
| Bsp1286I | GDGCHC | 1 cut(s) | 375 |
| Bsp143I | GATC | 4 cut(s) | 91, 176, 430, 517 |
| BspCNI | CTCAG | 1 cut(s) | 565 |
| BspLI | GGNNCC | 1 cut(s) | 385 |
| BspMAI | CTGCAG | 2 cut(s) | 82, 439 |
| BspPI | GGATC | 3 cut(s) | 99, 184, 425 |
| BspQI | GCTCTTC | 1 cut(s) | 618 |
| BsrDI | GCAATG | 1 cut(s) | 539 |
| BsrI | ACTGG | 1 cut(s) | 485 |
| BssECI | CCNNGG | 1 cut(s) | 55 |
| BssMI | GATC | 4 cut(s) | 91, 176, 430, 517 |
| Bst2UI | CCWGG | 1 cut(s) | 57 |
| Bst4CI | ACNGT | 2 cut(s) | 169, 227 |
| Bst6I | CTCTTC | 1 cut(s) | 618 |
| BstC8I | GCNNGC | 2 cut(s) | 123, 465 |
| BstDEI | CTNAG | 3 cut(s) | 238, 349, 573 |
| BstEII | GGTNACC | 1 cut(s) | 232 |
| BstF5I | GGATG | 1 cut(s) | 51 |
| BstKTI | GATC | 4 cut(s) | 94, 179, 433, 520 |
| BstMBI | GATC | 4 cut(s) | 91, 176, 430, 517 |
| BstNI | CCWGG | 1 cut(s) | 57 |
| BstNSI | RCATGY | 2 cut(s) | 215, 312 |
| BstPI | GGTNACC | 1 cut(s) | 232 |
| BstSCI | CCNGG | 1 cut(s) | 55 |
| BstSFI | CTRYAG | 2 cut(s) | 78, 435 |
| BstSLI | GKGCMC | 1 cut(s) | 375 |
| BstV1I | GCAGC | 2 cut(s) | 64, 92 |
| BstX2I | RGATCY | 3 cut(s) | 91, 176, 430 |
| BstYI | RGATCY | 3 cut(s) | 91, 176, 430 |
| BsuI | GTATCC | 1 cut(s) | 499 |
| BtsCI | GGATG | 1 cut(s) | 51 |
| BtsIMutI | CAGTG | 1 cut(s) | 232 |
| Cac8I | GCNNGC | 2 cut(s) | 123, 465 |
| Cfr13I | GGNCC | 1 cut(s) | 131 |
| CviAII | CATG | 5 cut(s) | 128, 212, 309, 536, 615 |
| CviJI | RGCY | 5 cut(s) | 30, 121, 197, 398, 499 |
| CviKI_1 | RGCY | 5 cut(s) | 30, 121, 197, 398, 499 |
| DdeI | CTNAG | 3 cut(s) | 238, 349, 573 |
| DpnI | GATC | 4 cut(s) | 93, 178, 432, 519 |
| DpnII | GATC | 4 cut(s) | 91, 176, 430, 517 |
| Eam1104I | CTCTTC | 1 cut(s) | 618 |
| EarI | CTCTTC | 1 cut(s) | 618 |
| Eco47I | GGWCC | 1 cut(s) | 131 |
| Eco91I | GGTNACC | 1 cut(s) | 232 |
| EcoO65I | GGTNACC | 1 cut(s) | 232 |
| EcoRII | CCWGG | 1 cut(s) | 55 |
| EcoT22I | ATGCAT | 2 cut(s) | 253, 541 |
| FaeI | CATG | 5 cut(s) | 131, 215, 312, 539, 618 |
| FatI | CATG | 5 cut(s) | 127, 211, 308, 535, 614 |
| FbaI | TGATCA | 1 cut(s) | 517 |
| Fnu4HI | GCNGC | 2 cut(s) | 78, 81 |
| FokI | GGATG | 1 cut(s) | 38 |
| Fsp4HI | GCNGC | 2 cut(s) | 78, 81 |
| FspBI | CTAG | 3 cut(s) | 257, 264, 500 |
| GluI | GCNGC | 2 cut(s) | 78, 81 |
| Hin1II | CATG | 5 cut(s) | 131, 215, 312, 539, 618 |
| HinfI | GANTC | 3 cut(s) | 280, 342, 440 |
| HphI | GGTGA | 3 cut(s) | 244, 337, 512 |
| HpyAV | CCTTC | 1 cut(s) | 602 |
| HpyCH4III | ACNGT | 2 cut(s) | 169, 227 |
| HpyCH4IV | ACGT | 2 cut(s) | 18, 41 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 24, 80, 251, 409, 437, 463, 539, 584 |
| HpyF3I | CTNAG | 3 cut(s) | 238, 349, 573 |
| HpySE526I | ACGT | 2 cut(s) | 18, 41 |
| Hsp92II | CATG | 5 cut(s) | 131, 215, 312, 539, 618 |
| Ksp22I | TGATCA | 1 cut(s) | 517 |
| Kzo9I | GATC | 4 cut(s) | 91, 176, 430, 517 |
| LguI | GCTCTTC | 1 cut(s) | 618 |
| LpnPI | CCDG | 6 cut(s) | 42, 69, 107, 366, 447, 466 |
| Lsp1109I | GCAGC | 2 cut(s) | 64, 92 |
| LweI | GCATC | 3 cut(s) | 128, 238, 571 |
| MaeI | CTAG | 3 cut(s) | 257, 264, 500 |
| MaeII | ACGT | 2 cut(s) | 18, 41 |
| MaeIII | GTNAC | 1 cut(s) | 232 |
| MalI | GATC | 4 cut(s) | 93, 178, 432, 519 |
| MboI | GATC | 4 cut(s) | 91, 176, 430, 517 |
| MboII | GAAGA | 3 cut(s) | 440, 503, 635 |
| MfeI | CAATTG | 1 cut(s) | 473 |
| MflI | RGATCY | 3 cut(s) | 91, 176, 430 |
| MhlI | GDGCHC | 1 cut(s) | 375 |
| MluCI | AATT | 4 cut(s) | 33, 181, 473, 631 |
| MlyI | GAGTC | 1 cut(s) | 434 |
| MmeI | TCCRAC | 1 cut(s) | 241 |
| MnlI | CCTC | 5 cut(s) | 108, 144, 283, 325, 480 |
| Mph1103I | ATGCAT | 2 cut(s) | 253, 541 |
| MseI | TTAA | 2 cut(s) | 485, 552 |
| MspR9I | CCNGG | 1 cut(s) | 57 |
| MunI | CAATTG | 1 cut(s) | 473 |
| MvaI | CCWGG | 1 cut(s) | 57 |
| NdeII | GATC | 4 cut(s) | 91, 176, 430, 517 |
| NlaIII | CATG | 5 cut(s) | 131, 215, 312, 539, 618 |
| NlaIV | GGNNCC | 1 cut(s) | 385 |
| NmuCI | GTSAC | 1 cut(s) | 232 |
| NsiI | ATGCAT | 2 cut(s) | 253, 541 |
| NspI | RCATGY | 2 cut(s) | 215, 312 |
| PciI | ACATGT | 1 cut(s) | 308 |
| PciSI | GCTCTTC | 1 cut(s) | 618 |
| PfeI | GAWTC | 2 cut(s) | 280, 342 |
| PkrI | GCNGC | 2 cut(s) | 79, 82 |
| PleI | GAGTC | 1 cut(s) | 434 |
| PpsI | GAGTC | 1 cut(s) | 434 |
| PscI | ACATGT | 1 cut(s) | 308 |
| Psp1406I | AACGTT | 1 cut(s) | 41 |
| Psp6I | CCWGG | 1 cut(s) | 55 |
| PspEI | GGTNACC | 1 cut(s) | 232 |
| PspGI | CCWGG | 1 cut(s) | 55 |
| PspN4I | GGNNCC | 1 cut(s) | 385 |
| PspPI | GGNCC | 1 cut(s) | 131 |
| PstI | CTGCAG | 2 cut(s) | 82, 439 |
| PsuI | RGATCY | 3 cut(s) | 91, 176, 430 |
| SapI | GCTCTTC | 1 cut(s) | 618 |
| SaqAI | TTAA | 2 cut(s) | 485, 552 |
| SatI | GCNGC | 2 cut(s) | 78, 81 |
| Sau3AI | GATC | 4 cut(s) | 91, 176, 430, 517 |
| Sau96I | GGNCC | 1 cut(s) | 131 |
| SchI | GAGTC | 1 cut(s) | 434 |
| ScrFI | CCNGG | 1 cut(s) | 57 |
| SduI | GDGCHC | 1 cut(s) | 375 |
| SfaNI | GCATC | 3 cut(s) | 128, 238, 571 |
| SfcI | CTRYAG | 2 cut(s) | 78, 435 |
| SinI | GGWCC | 1 cut(s) | 131 |
| SmlI | CTYRAG | 2 cut(s) | 112, 442 |
| SmoI | CTYRAG | 2 cut(s) | 112, 442 |
| Sse9I | AATT | 4 cut(s) | 33, 181, 473, 631 |
| SspMI | CTAG | 3 cut(s) | 257, 264, 500 |
| StyD4I | CCNGG | 1 cut(s) | 55 |
| TaaI | ACNGT | 2 cut(s) | 169, 227 |
| TaiI | ACGT | 2 cut(s) | 21, 44 |
| TaqI | TCGA | 2 cut(s) | 136, 561 |
| TasI | AATT | 4 cut(s) | 33, 181, 473, 631 |
| TfiI | GAWTC | 2 cut(s) | 280, 342 |
| Tru1I | TTAA | 2 cut(s) | 485, 552 |
| Tru9I | TTAA | 2 cut(s) | 485, 552 |
| TscAI | CASTG | 1 cut(s) | 232 |
| TseFI | GTSAC | 1 cut(s) | 232 |
| TseI | GCWGC | 2 cut(s) | 77, 80 |
| Tsp45I | GTSAC | 1 cut(s) | 232 |
| TspDTI | ATGAA | 2 cut(s) | 504, 621 |
| TspRI | CASTG | 1 cut(s) | 232 |
| VpaK11BI | GGWCC | 1 cut(s) | 131 |
| XceI | RCATGY | 2 cut(s) | 215, 312 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 224 |
| XspI | CTAG | 3 cut(s) | 257, 264, 500 |
| Zsp2I | ATGCAT | 2 cut(s) | 253, 541 |