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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 132 |
| AcuI | CTGAAG | 1 cut(s) | 273 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 182 |
| AgsI | TTSAA | 4 cut(s) | 13, 74, 274, 316 |
| AleI | CACNNNNGTG | 2 cut(s) | 232, 234 |
| AluBI | AGCT | 1 cut(s) | 147 |
| AluI | AGCT | 1 cut(s) | 147 |
| ApeKI | GCWGC | 1 cut(s) | 106 |
| ApoI | RAATTY | 1 cut(s) | 132 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 8 |
| AspLEI | GCGC | 1 cut(s) | 188 |
| AsuHPI | GGTGA | 1 cut(s) | 208 |
| AxyI | CCTNAGG | 1 cut(s) | 42 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 111, 144 |
| BbvI | GCAGC | 1 cut(s) | 93 |
| BccI | CCATC | 1 cut(s) | 145 |
| BfmI | CTRYAG | 2 cut(s) | 81, 126 |
| BisI | GCNGC | 1 cut(s) | 107 |
| BlsI | GCNGC | 1 cut(s) | 108 |
| BmsI | GCATC | 2 cut(s) | 158, 247 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 77, 109 |
| BsaJI | CCNNGG | 1 cut(s) | 192 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 182 |
| Bse21I | CCTNAGG | 1 cut(s) | 42 |
| BseDI | CCNNGG | 1 cut(s) | 192 |
| BseGI | GGATG | 1 cut(s) | 173 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 182 |
| BseMII | CTCAG | 3 cut(s) | 33, 48, 108 |
| BseXI | GCAGC | 1 cut(s) | 93 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 182 |
| BsmI | GAATGC | 1 cut(s) | 355 |
| Bsp19I | CCATGG | 1 cut(s) | 192 |
| BspCNI | CTCAG | 3 cut(s) | 34, 49, 107 |
| BssECI | CCNNGG | 1 cut(s) | 192 |
| BssT1I | CCWWGG | 1 cut(s) | 192 |
| Bst4CI | ACNGT | 3 cut(s) | 127, 159, 202 |
| Bst6I | CTCTTC | 1 cut(s) | 69 |
| BstC8I | GCNNGC | 1 cut(s) | 173 |
| BstDEI | CTNAG | 4 cut(s) | 42, 57, 94, 309 |
| BstDSI | CCRYGG | 1 cut(s) | 192 |
| BstEII | GGTNACC | 1 cut(s) | 196 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 180 |
| BstF5I | GGATG | 1 cut(s) | 173 |
| BstHHI | GCGC | 1 cut(s) | 188 |
| BstPI | GGTNACC | 1 cut(s) | 196 |
| BstSFI | CTRYAG | 2 cut(s) | 81, 126 |
| BstV1I | GCAGC | 1 cut(s) | 93 |
| Bsu36I | CCTNAGG | 1 cut(s) | 42 |
| BtgI | CCRYGG | 1 cut(s) | 192 |
| BtsCI | GGATG | 1 cut(s) | 173 |
| BtsIMutI | CAGTG | 2 cut(s) | 123, 249 |
| Cac8I | GCNNGC | 1 cut(s) | 173 |
| CfoI | GCGC | 1 cut(s) | 188 |
| CviAII | CATG | 2 cut(s) | 193, 262 |
| CviJI | RGCY | 3 cut(s) | 80, 147, 175 |
| CviKI_1 | RGCY | 3 cut(s) | 80, 147, 175 |
| DdeI | CTNAG | 4 cut(s) | 42, 57, 94, 309 |
| Eam1104I | CTCTTC | 1 cut(s) | 69 |
| EarI | CTCTTC | 1 cut(s) | 69 |
| Eco130I | CCWWGG | 1 cut(s) | 192 |
| Eco57I | CTGAAG | 1 cut(s) | 273 |
| Eco81I | CCTNAGG | 1 cut(s) | 42 |
| Eco91I | GGTNACC | 1 cut(s) | 196 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 180 |
| EcoO65I | GGTNACC | 1 cut(s) | 196 |
| EcoRI | GAATTC | 1 cut(s) | 132 |
| EcoT14I | CCWWGG | 1 cut(s) | 192 |
| ErhI | CCWWGG | 1 cut(s) | 192 |
| FaeI | CATG | 2 cut(s) | 196, 265 |
| FaiI | YATR | 8 cut(s) | 21, 83, 104, 194, 263, 268, 282, 284 |
| FatI | CATG | 2 cut(s) | 192, 261 |
| FauNDI | CATATG | 1 cut(s) | 282 |
| Fnu4HI | GCNGC | 1 cut(s) | 107 |
| FokI | GGATG | 1 cut(s) | 180 |
| Fsp4HI | GCNGC | 1 cut(s) | 107 |
| GlaI | GCGC | 1 cut(s) | 187 |
| GluI | GCNGC | 1 cut(s) | 107 |
| HhaI | GCGC | 1 cut(s) | 188 |
| Hin1II | CATG | 2 cut(s) | 196, 265 |
| Hin6I | GCGC | 1 cut(s) | 186 |
| HinP1I | GCGC | 1 cut(s) | 186 |
| HincII | GTYRAC | 1 cut(s) | 300 |
| HindII | GTYRAC | 1 cut(s) | 300 |
| HindIII | AAGCTT | 1 cut(s) | 145 |
| HpaI | GTTAAC | 1 cut(s) | 300 |
| HphI | GGTGA | 1 cut(s) | 208 |
| Hpy166II | GTNNAC | 1 cut(s) | 300 |
| Hpy188I | TCNGA | 1 cut(s) | 97 |
| Hpy188III | TCNNGA | 4 cut(s) | 41, 141, 153, 316 |
| Hpy8I | GTNNAC | 1 cut(s) | 300 |
| HpyCH4III | ACNGT | 3 cut(s) | 127, 159, 202 |
| HpyCH4IV | ACGT | 1 cut(s) | 100 |
| HpyCH4V | TGCA | 2 cut(s) | 171, 227 |
| HpyF3I | CTNAG | 4 cut(s) | 42, 57, 94, 309 |
| HpySE526I | ACGT | 1 cut(s) | 100 |
| Hsp92II | CATG | 2 cut(s) | 196, 265 |
| HspAI | GCGC | 1 cut(s) | 186 |
| KspAI | GTTAAC | 1 cut(s) | 300 |
| LmnI | GCTCC | 1 cut(s) | 277 |
| LpnPI | CCDG | 4 cut(s) | 54, 138, 168, 245 |
| Lsp1109I | GCAGC | 1 cut(s) | 93 |
| LweI | GCATC | 2 cut(s) | 158, 247 |
| MaeII | ACGT | 1 cut(s) | 100 |
| MaeIII | GTNAC | 2 cut(s) | 196, 216 |
| MboII | GAAGA | 3 cut(s) | 86, 125, 266 |
| MluCI | AATT | 3 cut(s) | 61, 132, 287 |
| MmeI | TCCRAC | 1 cut(s) | 273 |
| MnlI | CCTC | 4 cut(s) | 37, 70, 321, 330 |
| MroXI | GAANNNNTTC | 1 cut(s) | 8 |
| MseI | TTAA | 1 cut(s) | 299 |
| MslI | CAYNNNNRTG | 2 cut(s) | 232, 234 |
| Mva1269I | GAATGC | 1 cut(s) | 355 |
| NcoI | CCATGG | 1 cut(s) | 192 |
| NdeI | CATATG | 1 cut(s) | 282 |
| NlaIII | CATG | 2 cut(s) | 196, 265 |
| NmuCI | GTSAC | 1 cut(s) | 196 |
| OliI | CACNNNNGTG | 2 cut(s) | 232, 234 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 106 |
| PctI | GAATGC | 1 cut(s) | 355 |
| PdmI | GAANNNNTTC | 1 cut(s) | 8 |
| PkrI | GCNGC | 1 cut(s) | 108 |
| PspEI | GGTNACC | 1 cut(s) | 196 |
| RseI | CAYNNNNRTG | 2 cut(s) | 232, 234 |
| SaqAI | TTAA | 1 cut(s) | 299 |
| SatI | GCNGC | 1 cut(s) | 107 |
| SetI | ASST | 4 cut(s) | 103, 149, 234, 332 |
| SfaNI | GCATC | 2 cut(s) | 158, 247 |
| SfcI | CTRYAG | 2 cut(s) | 81, 126 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 232, 234 |
| Sse9I | AATT | 3 cut(s) | 61, 132, 287 |
| StyI | CCWWGG | 1 cut(s) | 192 |
| TaaI | ACNGT | 3 cut(s) | 127, 159, 202 |
| TaiI | ACGT | 1 cut(s) | 103 |
| TasI | AATT | 3 cut(s) | 61, 132, 287 |
| Tru1I | TTAA | 1 cut(s) | 299 |
| Tru9I | TTAA | 1 cut(s) | 299 |
| TscAI | CASTG | 2 cut(s) | 130, 256 |
| TseFI | GTSAC | 1 cut(s) | 196 |
| TseI | GCWGC | 1 cut(s) | 106 |
| Tsp45I | GTSAC | 1 cut(s) | 196 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 2 cut(s) | 130, 256 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 180 |
| XapI | RAATTY | 1 cut(s) | 132 |
| XmnI | GAANNNNTTC | 1 cut(s) | 8 |