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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 277 |
| AccB1I | GGYRCC | 2 cut(s) | 277, 462 |
| AccI | GTMKAC | 1 cut(s) | 327 |
| AciI | CCGC | 1 cut(s) | 51 |
| AclWI | GGATC | 2 cut(s) | 204, 374 |
| AcsI | RAATTY | 2 cut(s) | 269, 518 |
| AcuI | CTGAAG | 1 cut(s) | 531 |
| AcyI | GRCGYC | 1 cut(s) | 318 |
| AfaI | GTAC | 2 cut(s) | 69, 279 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 514 |
| AflIII | ACRYGT | 1 cut(s) | 400 |
| AgsI | TTSAA | 4 cut(s) | 27, 109, 425, 554 |
| AjnI | CCWGG | 1 cut(s) | 120 |
| AluBI | AGCT | 2 cut(s) | 395, 588 |
| AluI | AGCT | 2 cut(s) | 395, 588 |
| AlwI | GGATC | 2 cut(s) | 204, 374 |
| AoxI | GGCC | 1 cut(s) | 52 |
| ApoI | RAATTY | 2 cut(s) | 269, 518 |
| Asp718I | GGTACC | 1 cut(s) | 277 |
| AspS9I | GGNCC | 1 cut(s) | 53 |
| AsuC2I | CCSGG | 1 cut(s) | 467 |
| AsuHPI | GGTGA | 3 cut(s) | 361, 469, 617 |
| BaeGI | GKGCMC | 1 cut(s) | 467 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 269, 302 |
| BanI | GGYRCC | 2 cut(s) | 277, 462 |
| BbsI | GAAGAC | 2 cut(s) | 432, 510 |
| BccI | CCATC | 4 cut(s) | 37, 41, 553, 596 |
| BciT130I | CCWGG | 1 cut(s) | 122 |
| BciVI | GTATCC | 1 cut(s) | 77 |
| BcnI | CCSGG | 1 cut(s) | 467 |
| BfaI | CTAG | 2 cut(s) | 312, 585 |
| BfuI | GTATCC | 1 cut(s) | 77 |
| BisI | GCNGC | 1 cut(s) | 52 |
| BlsI | GCNGC | 1 cut(s) | 53 |
| Bme1390I | CCNGG | 2 cut(s) | 122, 467 |
| BmgT120I | GGNCC | 1 cut(s) | 53 |
| BmiI | GGNNCC | 2 cut(s) | 279, 464 |
| BmrFI | CCNGG | 2 cut(s) | 122, 467 |
| BmsI | GCATC | 1 cut(s) | 160 |
| BpiI | GAAGAC | 2 cut(s) | 432, 510 |
| BpuMI | CCSGG | 1 cut(s) | 467 |
| BsaHI | GRCGYC | 1 cut(s) | 318 |
| BsaJI | CCNNGG | 2 cut(s) | 56, 120 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 514 |
| Bse3DI | GCAATG | 1 cut(s) | 180 |
| BseBI | CCWGG | 1 cut(s) | 122 |
| BseDI | CCNNGG | 2 cut(s) | 56, 120 |
| BseGI | GGATG | 2 cut(s) | 48, 52 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 514 |
| BseMI | GCAATG | 1 cut(s) | 180 |
| BseSI | GKGCMC | 1 cut(s) | 467 |
| BshFI | GGCC | 1 cut(s) | 54 |
| BshNI | GGYRCC | 2 cut(s) | 277, 462 |
| BsiSI | CCGG | 1 cut(s) | 467 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 514 |
| BsnI | GGCC | 1 cut(s) | 54 |
| Bsp1286I | GDGCHC | 1 cut(s) | 467 |
| Bsp143I | GATC | 3 cut(s) | 196, 331, 379 |
| BspACI | CCGC | 1 cut(s) | 51 |
| BspANI | GGCC | 1 cut(s) | 54 |
| BspLI | GGNNCC | 2 cut(s) | 279, 464 |
| BspPI | GGATC | 2 cut(s) | 204, 374 |
| BspT107I | GGYRCC | 2 cut(s) | 277, 462 |
| BsrDI | GCAATG | 1 cut(s) | 180 |
| BssECI | CCNNGG | 2 cut(s) | 56, 120 |
| BssMI | GATC | 3 cut(s) | 196, 331, 379 |
| BssNI | GRCGYC | 1 cut(s) | 318 |
| BssT1I | CCWWGG | 1 cut(s) | 56 |
| Bst2UI | CCWGG | 1 cut(s) | 122 |
| Bst4CI | ACNGT | 2 cut(s) | 149, 233 |
| BstACI | GRCGYC | 1 cut(s) | 318 |
| BstDEI | CTNAG | 1 cut(s) | 391 |
| BstF5I | GGATG | 2 cut(s) | 48, 52 |
| BstKTI | GATC | 3 cut(s) | 199, 334, 382 |
| BstMBI | GATC | 3 cut(s) | 196, 331, 379 |
| BstNI | CCWGG | 1 cut(s) | 122 |
| BstNSI | RCATGY | 2 cut(s) | 8, 404 |
| BstSCI | CCNGG | 2 cut(s) | 120, 465 |
| BstSLI | GKGCMC | 1 cut(s) | 467 |
| BstV2I | GAAGAC | 2 cut(s) | 432, 510 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 95, 121 |
| BsuI | GTATCC | 1 cut(s) | 77 |
| BsuRI | GGCC | 1 cut(s) | 54 |
| BtsCI | GGATG | 2 cut(s) | 48, 52 |
| BtsIMutI | CAGTG | 2 cut(s) | 100, 154 |
| Cfr13I | GGNCC | 1 cut(s) | 53 |
| CseI | GACGC | 1 cut(s) | 307 |
| Csp6I | GTAC | 2 cut(s) | 68, 278 |
| CviAII | CATG | 3 cut(s) | 5, 89, 401 |
| CviJI | RGCY | 6 cut(s) | 54, 119, 205, 395, 488, 588 |
| CviKI_1 | RGCY | 6 cut(s) | 54, 119, 205, 395, 488, 588 |
| CviQI | GTAC | 2 cut(s) | 68, 278 |
| DdeI | CTNAG | 1 cut(s) | 391 |
| DpnI | GATC | 3 cut(s) | 198, 333, 381 |
| DpnII | GATC | 3 cut(s) | 196, 331, 379 |
| DraI | TTTAAA | 2 cut(s) | 289, 375 |
| Eco130I | CCWWGG | 1 cut(s) | 56 |
| Eco57I | CTGAAG | 1 cut(s) | 531 |
| EcoRI | GAATTC | 1 cut(s) | 518 |
| EcoRII | CCWGG | 1 cut(s) | 120 |
| EcoT14I | CCWWGG | 1 cut(s) | 56 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| ErhI | CCWWGG | 1 cut(s) | 56 |
| FaeI | CATG | 3 cut(s) | 8, 92, 404 |
| FaiI | YATR | 9 cut(s) | 6, 90, 221, 250, 402, 420, 594, 596, 619 |
| FatI | CATG | 3 cut(s) | 4, 88, 400 |
| FauNDI | CATATG | 1 cut(s) | 594 |
| FblI | GTMKAC | 1 cut(s) | 327 |
| Fnu4HI | GCNGC | 1 cut(s) | 52 |
| FokI | GGATG | 2 cut(s) | 55, 59 |
| Fsp4HI | GCNGC | 1 cut(s) | 52 |
| FspBI | CTAG | 2 cut(s) | 312, 585 |
| GluI | GCNGC | 1 cut(s) | 52 |
| HaeIII | GGCC | 1 cut(s) | 54 |
| HapII | CCGG | 1 cut(s) | 467 |
| HgaI | GACGC | 1 cut(s) | 307 |
| Hin1I | GRCGYC | 1 cut(s) | 318 |
| Hin1II | CATG | 3 cut(s) | 8, 92, 404 |
| HincII | GTYRAC | 2 cut(s) | 259, 625 |
| HindII | GTYRAC | 2 cut(s) | 259, 625 |
| HpaII | CCGG | 1 cut(s) | 467 |
| HphI | GGTGA | 3 cut(s) | 361, 469, 617 |
| Hpy166II | GTNNAC | 4 cut(s) | 259, 328, 342, 625 |
| Hpy188I | TCNGA | 2 cut(s) | 144, 537 |
| Hpy188III | TCNNGA | 1 cut(s) | 11 |
| Hpy8I | GTNNAC | 4 cut(s) | 259, 328, 342, 625 |
| HpyAV | CCTTC | 2 cut(s) | 476, 605 |
| HpyCH4III | ACNGT | 2 cut(s) | 149, 233 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 173, 178, 185, 191 |
| HpyF3I | CTNAG | 1 cut(s) | 391 |
| Hsp92I | GRCGYC | 1 cut(s) | 318 |
| Hsp92II | CATG | 3 cut(s) | 8, 92, 404 |
| KpnI | GGTACC | 1 cut(s) | 281 |
| Kzo9I | GATC | 3 cut(s) | 196, 331, 379 |
| LpnPI | CCDG | 5 cut(s) | 107, 134, 220, 480, 522 |
| LweI | GCATC | 1 cut(s) | 160 |
| MaeI | CTAG | 2 cut(s) | 312, 585 |
| MalI | GATC | 3 cut(s) | 198, 333, 381 |
| MboI | GATC | 3 cut(s) | 196, 331, 379 |
| MboII | GAAGA | 2 cut(s) | 437, 515 |
| MhlI | GDGCHC | 1 cut(s) | 467 |
| MluCI | AATT | 4 cut(s) | 237, 269, 518, 628 |
| MnlI | CCTC | 5 cut(s) | 30, 247, 443, 453, 534 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 4 cut(s) | 240, 288, 374, 631 |
| MslI | CAYNNNNRTG | 2 cut(s) | 93, 375 |
| MspI | CCGG | 1 cut(s) | 467 |
| MspR9I | CCNGG | 2 cut(s) | 122, 467 |
| MvaI | CCWGG | 1 cut(s) | 122 |
| NciI | CCSGG | 1 cut(s) | 467 |
| NdeI | CATATG | 1 cut(s) | 594 |
| NdeII | GATC | 3 cut(s) | 196, 331, 379 |
| NlaIII | CATG | 3 cut(s) | 8, 92, 404 |
| NlaIV | GGNNCC | 2 cut(s) | 279, 464 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 2 cut(s) | 8, 404 |
| PciI | ACATGT | 1 cut(s) | 400 |
| PflFI | GACNNNGTC | 1 cut(s) | 128 |
| PkrI | GCNGC | 1 cut(s) | 53 |
| PscI | ACATGT | 1 cut(s) | 400 |
| Psp6I | CCWGG | 1 cut(s) | 120 |
| PspGI | CCWGG | 1 cut(s) | 120 |
| PspN4I | GGNNCC | 2 cut(s) | 279, 464 |
| PspPI | GGNCC | 1 cut(s) | 53 |
| PsyI | GACNNNGTC | 1 cut(s) | 128 |
| RsaI | GTAC | 2 cut(s) | 69, 279 |
| RsaNI | GTAC | 2 cut(s) | 68, 278 |
| RseI | CAYNNNNRTG | 2 cut(s) | 93, 375 |
| SaqAI | TTAA | 4 cut(s) | 240, 288, 374, 631 |
| SatI | GCNGC | 1 cut(s) | 52 |
| Sau3AI | GATC | 3 cut(s) | 196, 331, 379 |
| Sau96I | GGNCC | 1 cut(s) | 53 |
| ScrFI | CCNGG | 2 cut(s) | 122, 467 |
| SduI | GDGCHC | 1 cut(s) | 467 |
| SetI | ASST | 9 cut(s) | 41, 62, 77, 258, 397, 464, 560, 586, 590 |
| SfaNI | GCATC | 1 cut(s) | 160 |
| SmiI | ATTTAAAT | 1 cut(s) | 375 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 93, 375 |
| Sse9I | AATT | 4 cut(s) | 237, 269, 518, 628 |
| SsiI | CCGC | 1 cut(s) | 51 |
| SspMI | CTAG | 2 cut(s) | 312, 585 |
| StyD4I | CCNGG | 2 cut(s) | 120, 465 |
| StyI | CCWWGG | 1 cut(s) | 56 |
| SwaI | ATTTAAAT | 1 cut(s) | 375 |
| TaaI | ACNGT | 2 cut(s) | 149, 233 |
| TaqI | TCGA | 1 cut(s) | 199 |
| TasI | AATT | 4 cut(s) | 237, 269, 518, 628 |
| TauI | GCSGC | 1 cut(s) | 54 |
| Tru1I | TTAA | 4 cut(s) | 240, 288, 374, 631 |
| Tru9I | TTAA | 4 cut(s) | 240, 288, 374, 631 |
| TscAI | CASTG | 2 cut(s) | 100, 154 |
| TspDTI | ATGAA | 2 cut(s) | 581, 624 |
| TspGWI | ACGGA | 1 cut(s) | 372 |
| TspRI | CASTG | 2 cut(s) | 100, 154 |
| Tth111I | GACNNNGTC | 1 cut(s) | 128 |
| XapI | RAATTY | 2 cut(s) | 269, 518 |
| XceI | RCATGY | 2 cut(s) | 8, 404 |
| XmiI | GTMKAC | 1 cut(s) | 327 |
| XspI | CTAG | 2 cut(s) | 312, 585 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |