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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 189 |
| AccB1I | GGYRCC | 2 cut(s) | 36, 100 |
| AccIII | TCCGGA | 1 cut(s) | 937 |
| AciI | CCGC | 3 cut(s) | 498, 977, 992 |
| AclWI | GGATC | 2 cut(s) | 210, 1476 |
| AcoI | YGGCCR | 1 cut(s) | 77 |
| AcsI | RAATTY | 2 cut(s) | 1136, 1624 |
| AcuI | CTGAAG | 1 cut(s) | 990 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 110, 678, 1061 |
| AflII | CTTAAG | 1 cut(s) | 1172 |
| AgeI | ACCGGT | 1 cut(s) | 859 |
| AjnI | CCWGG | 2 cut(s) | 346, 1327 |
| AleI | CACNNNNGTG | 1 cut(s) | 1619 |
| AluBI | AGCT | 9 cut(s) | 95, 247, 775, 1106, 1146, 1457, 1497, 1528, 1777 |
| AluI | AGCT | 9 cut(s) | 95, 247, 775, 1106, 1146, 1457, 1497, 1528, 1777 |
| Alw26I | GTCTC | 3 cut(s) | 476, 1436, 1726 |
| AlwI | GGATC | 2 cut(s) | 210, 1476 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1067 |
| Ama87I | CYCGRG | 1 cut(s) | 1298 |
| Aor13HI | TCCGGA | 1 cut(s) | 937 |
| AoxI | GGCC | 3 cut(s) | 77, 155, 212 |
| ApeKI | GCWGC | 3 cut(s) | 62, 334, 415 |
| ApoI | RAATTY | 2 cut(s) | 1136, 1624 |
| AsiGI | ACCGGT | 1 cut(s) | 859 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 785 |
| AspS9I | GGNCC | 2 cut(s) | 431, 857 |
| AsuHPI | GGTGA | 2 cut(s) | 1261, 1633 |
| AsuII | TTCGAA | 1 cut(s) | 888 |
| AsuNHI | GCTAGC | 1 cut(s) | 1315 |
| AvaI | CYCGRG | 1 cut(s) | 1298 |
| AvaII | GGWCC | 2 cut(s) | 431, 857 |
| AxyI | CCTNAGG | 1 cut(s) | 1060 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1644, 1677 |
| BanI | GGYRCC | 2 cut(s) | 36, 100 |
| BbvCI | CCTCAGC | 1 cut(s) | 198 |
| BbvI | GCAGC | 3 cut(s) | 49, 321, 427 |
| BccI | CCATC | 6 cut(s) | 48, 127, 356, 422, 1814, 1831 |
| BceAI | ACGGC | 1 cut(s) | 88 |
| BciT130I | CCWGG | 2 cut(s) | 348, 1329 |
| BciVI | GTATCC | 1 cut(s) | 891 |
| BclI | TGATCA | 1 cut(s) | 1537 |
| BcoDI | GTCTC | 3 cut(s) | 476, 1436, 1726 |
| BfaI | CTAG | 4 cut(s) | 425, 1316, 1458, 1831 |
| BfmI | CTRYAG | 4 cut(s) | 706, 717, 1357, 1704 |
| BfrI | CTTAAG | 1 cut(s) | 1172 |
| BfuI | GTATCC | 1 cut(s) | 891 |
| BisI | GCNGC | 3 cut(s) | 63, 335, 416 |
| BlsI | GCNGC | 3 cut(s) | 64, 336, 417 |
| Bme1390I | CCNGG | 2 cut(s) | 348, 1329 |
| Bme18I | GGWCC | 2 cut(s) | 431, 857 |
| BmeT110I | CYCGRG | 1 cut(s) | 1298 |
| BmgT120I | GGNCC | 2 cut(s) | 431, 857 |
| BmiI | GGNNCC | 5 cut(s) | 38, 102, 467, 522, 1551 |
| BmrFI | CCNGG | 2 cut(s) | 348, 1329 |
| BmsI | GCATC | 1 cut(s) | 712 |
| BmtI | GCTAGC | 1 cut(s) | 1319 |
| BpmI | CTGGAG | 1 cut(s) | 132 |
| Bpu10I | CCTNAGC | 2 cut(s) | 198, 1464 |
| Bpu14I | TTCGAA | 1 cut(s) | 888 |
| BpuEI | CTTGAG | 2 cut(s) | 797, 1434 |
| BsaJI | CCNNGG | 2 cut(s) | 640, 1328 |
| BsaWI | WCCGGW | 4 cut(s) | 97, 581, 859, 937 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 609, 639 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 110, 678, 1061 |
| Bse118I | RCCGGY | 2 cut(s) | 75, 859 |
| Bse1I | ACTGG | 3 cut(s) | 115, 659, 1375 |
| Bse21I | CCTNAGG | 1 cut(s) | 1060 |
| Bse3DI | GCAATG | 2 cut(s) | 948, 963 |
| BseAI | TCCGGA | 1 cut(s) | 937 |
| BseBI | CCWGG | 2 cut(s) | 348, 1329 |
| BseDI | CCNNGG | 2 cut(s) | 640, 1328 |
| BseGI | GGATG | 9 cut(s) | 40, 138, 142, 367, 571, 882, 934, 1293, 1402 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 110, 678, 1061 |
| BseMI | GCAATG | 2 cut(s) | 948, 963 |
| BseMII | CTCAG | 4 cut(s) | 189, 945, 1074, 1431 |
| BseNI | ACTGG | 3 cut(s) | 115, 659, 1375 |
| BseRI | GAGGAG | 1 cut(s) | 168 |
| BseXI | GCAGC | 3 cut(s) | 49, 321, 427 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1409 |
| BshFI | GGCC | 3 cut(s) | 79, 157, 214 |
| BshNI | GGYRCC | 2 cut(s) | 36, 100 |
| BshTI | ACCGGT | 1 cut(s) | 859 |
| BsiEI | CGRYCG | 1 cut(s) | 1409 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1298 |
| BsiSI | CCGG | 5 cut(s) | 76, 98, 582, 860, 938 |
| BslFI | GGGAC | 2 cut(s) | 343, 1796 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 110, 678, 1061 |
| BsmAI | GTCTC | 3 cut(s) | 476, 1436, 1726 |
| BsmFI | GGGAC | 2 cut(s) | 343, 1796 |
| BsmI | GAATGC | 1 cut(s) | 1023 |
| BsnI | GGCC | 3 cut(s) | 79, 157, 214 |
| BsoBI | CYCGRG | 1 cut(s) | 1298 |
| Bsp119I | TTCGAA | 1 cut(s) | 888 |
| Bsp13I | TCCGGA | 1 cut(s) | 937 |
| Bsp143I | GATC | 8 cut(s) | 202, 751, 1399, 1406, 1468, 1537, 1603, 1708 |
| BspACI | CCGC | 3 cut(s) | 498, 977, 992 |
| BspANI | GGCC | 3 cut(s) | 79, 157, 214 |
| BspCNI | CTCAG | 4 cut(s) | 190, 946, 1073, 1432 |
| BspEI | TCCGGA | 1 cut(s) | 937 |
| BspHI | TCATGA | 1 cut(s) | 595 |
| BspLI | GGNNCC | 5 cut(s) | 38, 102, 467, 522, 1551 |
| BspMAI | CTGCAG | 1 cut(s) | 1708 |
| BspOI | GCTAGC | 1 cut(s) | 1319 |
| BspPI | GGATC | 2 cut(s) | 210, 1476 |
| BspT104I | TTCGAA | 1 cut(s) | 888 |
| BspT107I | GGYRCC | 2 cut(s) | 36, 100 |
| BspTI | CTTAAG | 1 cut(s) | 1172 |
| BsrDI | GCAATG | 2 cut(s) | 948, 963 |
| BsrFI | RCCGGY | 2 cut(s) | 75, 859 |
| BsrI | ACTGG | 3 cut(s) | 115, 659, 1375 |
| BssAI | RCCGGY | 2 cut(s) | 75, 859 |
| BssECI | CCNNGG | 2 cut(s) | 640, 1328 |
| BssMI | GATC | 8 cut(s) | 202, 751, 1399, 1406, 1468, 1537, 1603, 1708 |
| Bst2UI | CCWGG | 2 cut(s) | 348, 1329 |
| Bst4CI | ACNGT | 4 cut(s) | 475, 826, 1018, 1477 |
| Bst6I | CTCTTC | 1 cut(s) | 966 |
| BstAFI | CTTAAG | 1 cut(s) | 1172 |
| BstBI | TTCGAA | 1 cut(s) | 888 |
| BstC8I | GCNNGC | 2 cut(s) | 449, 1317 |
| BstDEI | CTNAG | 6 cut(s) | 198, 357, 954, 1060, 1440, 1464 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1059 |
| BstF5I | GGATG | 9 cut(s) | 40, 138, 142, 367, 571, 882, 934, 1293, 1402 |
| BstKTI | GATC | 8 cut(s) | 205, 754, 1402, 1409, 1471, 1540, 1606, 1711 |
| BstMAI | GTCTC | 3 cut(s) | 476, 1436, 1726 |
| BstMBI | GATC | 8 cut(s) | 202, 751, 1399, 1406, 1468, 1537, 1603, 1708 |
| BstMCI | CGRYCG | 1 cut(s) | 1409 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 974, 1703 |
| BstNI | CCWGG | 2 cut(s) | 348, 1329 |
| BstNSI | RCATGY | 2 cut(s) | 89, 691 |
| BstSCI | CCNGG | 2 cut(s) | 346, 1327 |
| BstSFI | CTRYAG | 4 cut(s) | 706, 717, 1357, 1704 |
| BstV1I | GCAGC | 3 cut(s) | 49, 321, 427 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1060 |
| BsuI | GTATCC | 1 cut(s) | 891 |
| BsuRI | GGCC | 3 cut(s) | 79, 157, 214 |
| BtgZI | GCGATG | 1 cut(s) | 1792 |
| BtsCI | GGATG | 9 cut(s) | 40, 138, 142, 367, 571, 882, 934, 1293, 1402 |
| BtsI | GCAGTG | 2 cut(s) | 277, 1817 |
| BtsIMutI | CAGTG | 2 cut(s) | 277, 1817 |
| Cac8I | GCNNGC | 2 cut(s) | 449, 1317 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1067 |
| CciI | TCATGA | 1 cut(s) | 595 |
| Cfr10I | RCCGGY | 2 cut(s) | 75, 859 |
| Cfr13I | GGNCC | 2 cut(s) | 431, 857 |
| CseI | GACGC | 1 cut(s) | 340 |
| CspAI | ACCGGT | 1 cut(s) | 859 |
| CviAII | CATG | 8 cut(s) | 86, 292, 509, 514, 596, 688, 1162, 1492 |
| DdeI | CTNAG | 6 cut(s) | 198, 357, 954, 1060, 1440, 1464 |
| DpnI | GATC | 8 cut(s) | 204, 753, 1401, 1408, 1470, 1539, 1605, 1710 |
| DpnII | GATC | 8 cut(s) | 202, 751, 1399, 1406, 1468, 1537, 1603, 1708 |
| EaeI | YGGCCR | 1 cut(s) | 77 |
| Eam1104I | CTCTTC | 1 cut(s) | 966 |
| EarI | CTCTTC | 1 cut(s) | 966 |
| Eco147I | AGGCCT | 1 cut(s) | 214 |
| Eco47I | GGWCC | 2 cut(s) | 431, 857 |
| Eco57I | CTGAAG | 1 cut(s) | 990 |
| Eco81I | CCTNAGG | 1 cut(s) | 1060 |
| Eco88I | CYCGRG | 1 cut(s) | 1298 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1059 |
| EcoRI | GAATTC | 1 cut(s) | 1136 |
| EcoRII | CCWGG | 2 cut(s) | 346, 1327 |
| FaeI | CATG | 8 cut(s) | 89, 295, 512, 517, 599, 691, 1165, 1495 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 49, 81, 431, 463 |
| FaqI | GGGAC | 2 cut(s) | 343, 1796 |
| FatI | CATG | 8 cut(s) | 85, 291, 508, 513, 595, 687, 1161, 1491 |
| FbaI | TGATCA | 1 cut(s) | 1537 |
| Fnu4HI | GCNGC | 3 cut(s) | 63, 335, 416 |
| FokI | GGATG | 9 cut(s) | 27, 145, 149, 374, 578, 889, 921, 1280, 1409 |
| Fsp4HI | GCNGC | 3 cut(s) | 63, 335, 416 |
| FspBI | CTAG | 4 cut(s) | 425, 1316, 1458, 1831 |
| GluI | GCNGC | 3 cut(s) | 63, 335, 416 |
| GsuI | CTGGAG | 1 cut(s) | 132 |
| HaeIII | GGCC | 3 cut(s) | 79, 157, 214 |
| HapII | CCGG | 5 cut(s) | 76, 98, 582, 860, 938 |
| HgaI | GACGC | 1 cut(s) | 340 |
| Hin1II | CATG | 8 cut(s) | 89, 295, 512, 517, 599, 691, 1165, 1495 |
| HincII | GTYRAC | 1 cut(s) | 108 |
| HindII | GTYRAC | 1 cut(s) | 108 |
| HinfI | GANTC | 4 cut(s) | 1371, 1579, 1734, 1757 |
| HpaII | CCGG | 5 cut(s) | 76, 98, 582, 860, 938 |
| HphI | GGTGA | 2 cut(s) | 1261, 1633 |
| Hpy166II | GTNNAC | 5 cut(s) | 108, 829, 857, 1429, 1614 |
| Hpy188I | TCNGA | 5 cut(s) | 435, 641, 738, 1142, 1584 |
| Hpy188III | TCNNGA | 5 cut(s) | 425, 524, 596, 938, 1028 |
| Hpy8I | GTNNAC | 5 cut(s) | 108, 829, 857, 1429, 1614 |
| Hpy99I | CGWCG | 1 cut(s) | 1010 |
| HpyAV | CCTTC | 7 cut(s) | 27, 123, 511, 804, 895, 1246, 1579 |
| HpyCH4III | ACNGT | 4 cut(s) | 475, 826, 1018, 1477 |
| HpyCH4V | TGCA | 9 cut(s) | 89, 295, 415, 616, 635, 687, 909, 948, 1706 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 974, 1703 |
| HpyF3I | CTNAG | 6 cut(s) | 198, 357, 954, 1060, 1440, 1464 |
| Hsp92II | CATG | 8 cut(s) | 89, 295, 512, 517, 599, 691, 1165, 1495 |
| Kpn2I | TCCGGA | 1 cut(s) | 937 |
| Ksp22I | TGATCA | 1 cut(s) | 1537 |
| Kzo9I | GATC | 8 cut(s) | 202, 751, 1399, 1406, 1468, 1537, 1603, 1708 |
| LmnI | GCTCC | 3 cut(s) | 100, 1525, 1678 |
| Lsp1109I | GCAGC | 3 cut(s) | 49, 321, 427 |
| LweI | GCATC | 1 cut(s) | 712 |
| MaeI | CTAG | 4 cut(s) | 425, 1316, 1458, 1831 |
| MaeIII | GTNAC | 4 cut(s) | 602, 959, 1289, 1480 |
| MalI | GATC | 8 cut(s) | 204, 753, 1401, 1408, 1470, 1539, 1605, 1710 |
| MboI | GATC | 8 cut(s) | 202, 751, 1399, 1406, 1468, 1537, 1603, 1708 |
| MboII | GAAGA | 9 cut(s) | 128, 178, 235, 238, 528, 983, 994, 1112, 1394 |
| MluCI | AATT | 3 cut(s) | 392, 1136, 1624 |
| MlyI | GAGTC | 4 cut(s) | 1380, 1588, 1728, 1751 |
| MmeI | TCCRAC | 3 cut(s) | 200, 443, 573 |
| MroI | TCCGGA | 1 cut(s) | 937 |
| MroXI | GAANNNNTTC | 1 cut(s) | 785 |
| MseI | TTAA | 7 cut(s) | 56, 572, 611, 821, 1173, 1275, 1560 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1113, 1619 |
| MspCI | CTTAAG | 1 cut(s) | 1172 |
| MspI | CCGG | 5 cut(s) | 76, 98, 582, 860, 938 |
| MspR9I | CCNGG | 2 cut(s) | 348, 1329 |
| Mva1269I | GAATGC | 1 cut(s) | 1023 |
| MvaI | CCWGG | 2 cut(s) | 348, 1329 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 974, 1703 |
| NdeII | GATC | 8 cut(s) | 202, 751, 1399, 1406, 1468, 1537, 1603, 1708 |
| NheI | GCTAGC | 1 cut(s) | 1315 |
| NlaIII | CATG | 8 cut(s) | 89, 295, 512, 517, 599, 691, 1165, 1495 |
| NlaIV | GGNNCC | 5 cut(s) | 38, 102, 467, 522, 1551 |
| NmuCI | GTSAC | 2 cut(s) | 602, 1289 |
| NspI | RCATGY | 2 cut(s) | 89, 691 |
| NspV | TTCGAA | 1 cut(s) | 888 |
| OliI | CACNNNNGTG | 1 cut(s) | 1619 |
| PagI | TCATGA | 1 cut(s) | 595 |
| PceI | AGGCCT | 1 cut(s) | 214 |
| PctI | GAATGC | 1 cut(s) | 1023 |
| PdmI | GAANNNNTTC | 1 cut(s) | 785 |
| PfoI | TCCNGGA | 1 cut(s) | 346 |
| PinAI | ACCGGT | 1 cut(s) | 859 |
| PkrI | GCNGC | 3 cut(s) | 64, 336, 417 |
| Ple19I | CGATCG | 1 cut(s) | 1409 |
| PleI | GAGTC | 4 cut(s) | 1379, 1587, 1728, 1751 |
| PpsI | GAGTC | 4 cut(s) | 1379, 1587, 1728, 1751 |
| PsiI | TTATAA | 1 cut(s) | 189 |
| Psp6I | CCWGG | 2 cut(s) | 346, 1327 |
| PspGI | CCWGG | 2 cut(s) | 346, 1327 |
| PspN4I | GGNNCC | 5 cut(s) | 38, 102, 467, 522, 1551 |
| PspPI | GGNCC | 2 cut(s) | 431, 857 |
| PstI | CTGCAG | 1 cut(s) | 1708 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1067 |
| PvuI | CGATCG | 1 cut(s) | 1409 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1113, 1619 |
| SaqAI | TTAA | 7 cut(s) | 56, 572, 611, 821, 1173, 1275, 1560 |
| SatI | GCNGC | 3 cut(s) | 63, 335, 416 |
| Sau3AI | GATC | 8 cut(s) | 202, 751, 1399, 1406, 1468, 1537, 1603, 1708 |
| Sau96I | GGNCC | 2 cut(s) | 431, 857 |
| SchI | GAGTC | 4 cut(s) | 1380, 1588, 1728, 1751 |
| ScrFI | CCNGG | 2 cut(s) | 348, 1329 |
| SfaNI | GCATC | 1 cut(s) | 712 |
| SfcI | CTRYAG | 4 cut(s) | 706, 717, 1357, 1704 |
| SfuI | TTCGAA | 1 cut(s) | 888 |
| SinI | GGWCC | 2 cut(s) | 431, 857 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1113, 1619 |
| SmlI | CTYRAG | 3 cut(s) | 776, 1172, 1449 |
| SmoI | CTYRAG | 3 cut(s) | 776, 1172, 1449 |
| Sse9I | AATT | 3 cut(s) | 392, 1136, 1624 |
| SseBI | AGGCCT | 1 cut(s) | 214 |
| SsiI | CCGC | 3 cut(s) | 498, 977, 992 |
| SspI | AATATT | 2 cut(s) | 254, 1686 |
| SspMI | CTAG | 4 cut(s) | 425, 1316, 1458, 1831 |
| StuI | AGGCCT | 1 cut(s) | 214 |
| StyD4I | CCNGG | 2 cut(s) | 346, 1327 |
| TaaI | ACNGT | 4 cut(s) | 475, 826, 1018, 1477 |
| TaqI | TCGA | 6 cut(s) | 233, 888, 1005, 1079, 1405, 1409 |
| TasI | AATT | 3 cut(s) | 392, 1136, 1624 |
| Tru1I | TTAA | 7 cut(s) | 56, 572, 611, 821, 1173, 1275, 1560 |
| Tru9I | TTAA | 7 cut(s) | 56, 572, 611, 821, 1173, 1275, 1560 |
| TscAI | CASTG | 2 cut(s) | 284, 1824 |
| TseFI | GTSAC | 2 cut(s) | 602, 1289 |
| TseI | GCWGC | 3 cut(s) | 62, 334, 415 |
| Tsp45I | GTSAC | 2 cut(s) | 602, 1289 |
| TspDTI | ATGAA | 7 cut(s) | 5, 497, 530, 714, 914, 1293, 1350 |
| TspRI | CASTG | 2 cut(s) | 284, 1824 |
| Vha464I | CTTAAG | 1 cut(s) | 1172 |
| VpaK11BI | GGWCC | 2 cut(s) | 431, 857 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1059 |
| XapI | RAATTY | 2 cut(s) | 1136, 1624 |
| XbaI | TCTAGA | 1 cut(s) | 424 |
| XceI | RCATGY | 2 cut(s) | 89, 691 |
| XmnI | GAANNNNTTC | 1 cut(s) | 785 |
| XspI | CTAG | 4 cut(s) | 425, 1316, 1458, 1831 |