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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 221 |
| AccB1I | GGYRCC | 2 cut(s) | 221, 702 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 110 |
| AccI | GTMKAC | 2 cut(s) | 567, 832 |
| AclWI | GGATC | 2 cut(s) | 444, 614 |
| AcyI | GRCGYC | 1 cut(s) | 558 |
| AfaI | GTAC | 3 cut(s) | 167, 223, 550 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 110, 452 |
| AflIII | ACRYGT | 1 cut(s) | 640 |
| AgsI | TTSAA | 4 cut(s) | 137, 349, 616, 665 |
| AleI | CACNNNNGTG | 1 cut(s) | 641 |
| AluBI | AGCT | 4 cut(s) | 182, 815, 909, 945 |
| AluI | AGCT | 4 cut(s) | 182, 815, 909, 945 |
| Alw26I | GTCTC | 1 cut(s) | 357 |
| AlwI | GGATC | 2 cut(s) | 444, 614 |
| AoxI | GGCC | 1 cut(s) | 292 |
| ApeKI | GCWGC | 3 cut(s) | 59, 62, 320 |
| Asp718I | GGTACC | 1 cut(s) | 221 |
| AspS9I | GGNCC | 1 cut(s) | 293 |
| AsuHPI | GGTGA | 2 cut(s) | 601, 860 |
| AsuNHI | GCTAGC | 1 cut(s) | 941 |
| BaeGI | GKGCMC | 1 cut(s) | 707 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 213, 246 |
| BanI | GGYRCC | 2 cut(s) | 221, 702 |
| BauI | CACGAG | 1 cut(s) | 147 |
| BbsI | GAAGAC | 2 cut(s) | 204, 672 |
| BbvI | GCAGC | 3 cut(s) | 46, 49, 307 |
| BccI | CCATC | 5 cut(s) | 18, 454, 796, 839, 917 |
| BcoDI | GTCTC | 1 cut(s) | 357 |
| BfaI | CTAG | 4 cut(s) | 552, 674, 828, 942 |
| BisI | GCNGC | 3 cut(s) | 60, 63, 321 |
| BlsI | GCNGC | 3 cut(s) | 61, 64, 322 |
| BmcAI | AGTACT | 1 cut(s) | 550 |
| BmgT120I | GGNCC | 1 cut(s) | 293 |
| BmiI | GGNNCC | 3 cut(s) | 223, 519, 704 |
| BmsI | GCATC | 1 cut(s) | 667 |
| BmtI | GCTAGC | 1 cut(s) | 945 |
| BpiI | GAAGAC | 2 cut(s) | 204, 672 |
| BpmI | CTGGAG | 1 cut(s) | 132 |
| BsaBI | GATNNNNATC | 1 cut(s) | 441 |
| BsaHI | GRCGYC | 1 cut(s) | 558 |
| BsaJI | CCNNGG | 1 cut(s) | 721 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 105, 135 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 110, 452 |
| Bse118I | RCCGGY | 1 cut(s) | 290 |
| Bse1I | ACTGG | 2 cut(s) | 115, 521 |
| Bse3DI | GCAATG | 2 cut(s) | 907, 934 |
| Bse8I | GATNNNNATC | 1 cut(s) | 441 |
| BseDI | CCNNGG | 1 cut(s) | 721 |
| BseGI | GGATG | 3 cut(s) | 40, 94, 751 |
| BseJI | GATNNNNATC | 1 cut(s) | 441 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 110, 452 |
| BseMI | GCAATG | 2 cut(s) | 907, 934 |
| BseMII | CTCAG | 2 cut(s) | 150, 807 |
| BseNI | ACTGG | 2 cut(s) | 115, 521 |
| BseRI | GAGGAG | 1 cut(s) | 28 |
| BseSI | GKGCMC | 1 cut(s) | 707 |
| BseXI | GCAGC | 3 cut(s) | 46, 49, 307 |
| BshFI | GGCC | 1 cut(s) | 294 |
| BshNI | GGYRCC | 2 cut(s) | 221, 702 |
| BsiSI | CCGG | 1 cut(s) | 291 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 110, 452 |
| BsmAI | GTCTC | 1 cut(s) | 357 |
| BsmI | GAATGC | 2 cut(s) | 65, 943 |
| BsnI | GGCC | 1 cut(s) | 294 |
| Bsp1286I | GDGCHC | 1 cut(s) | 707 |
| Bsp143I | GATC | 2 cut(s) | 436, 619 |
| BspANI | GGCC | 1 cut(s) | 294 |
| BspCNI | CTCAG | 2 cut(s) | 151, 808 |
| BspHI | TCATGA | 1 cut(s) | 919 |
| BspLI | GGNNCC | 3 cut(s) | 223, 519, 704 |
| BspOI | GCTAGC | 1 cut(s) | 945 |
| BspPI | GGATC | 2 cut(s) | 444, 614 |
| BspT107I | GGYRCC | 2 cut(s) | 221, 702 |
| BsrDI | GCAATG | 2 cut(s) | 907, 934 |
| BsrFI | RCCGGY | 1 cut(s) | 290 |
| BsrI | ACTGG | 2 cut(s) | 115, 521 |
| BssAI | RCCGGY | 1 cut(s) | 290 |
| BssECI | CCNNGG | 1 cut(s) | 721 |
| BssMI | GATC | 2 cut(s) | 436, 619 |
| BssNI | GRCGYC | 1 cut(s) | 558 |
| BssSI | CACGAG | 1 cut(s) | 147 |
| Bst2BI | CACGAG | 1 cut(s) | 147 |
| Bst4CI | ACNGT | 7 cut(s) | 203, 229, 274, 455, 533, 722, 771 |
| Bst6I | CTCTTC | 1 cut(s) | 111 |
| BstACI | GRCGYC | 1 cut(s) | 558 |
| BstC8I | GCNNGC | 3 cut(s) | 57, 911, 943 |
| BstDEI | CTNAG | 2 cut(s) | 159, 816 |
| BstDSI | CCRYGG | 1 cut(s) | 721 |
| BstF5I | GGATG | 3 cut(s) | 40, 94, 751 |
| BstKTI | GATC | 2 cut(s) | 439, 622 |
| BstMAI | GTCTC | 1 cut(s) | 357 |
| BstMBI | GATC | 2 cut(s) | 436, 619 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 906 |
| BstNSI | RCATGY | 2 cut(s) | 59, 644 |
| BstSLI | GKGCMC | 1 cut(s) | 707 |
| BstV1I | GCAGC | 3 cut(s) | 46, 49, 307 |
| BstV2I | GAAGAC | 2 cut(s) | 204, 672 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 335 |
| BsuRI | GGCC | 1 cut(s) | 294 |
| BtgI | CCRYGG | 1 cut(s) | 721 |
| BtsCI | GGATG | 3 cut(s) | 40, 94, 751 |
| BtsIMutI | CAGTG | 2 cut(s) | 225, 528 |
| Cac8I | GCNNGC | 3 cut(s) | 57, 911, 943 |
| CciI | TCATGA | 1 cut(s) | 919 |
| Cfr10I | RCCGGY | 1 cut(s) | 290 |
| Cfr13I | GGNCC | 1 cut(s) | 293 |
| CseI | GACGC | 1 cut(s) | 547 |
| Csp6I | GTAC | 3 cut(s) | 166, 222, 549 |
| CviAII | CATG | 4 cut(s) | 56, 329, 641, 920 |
| CviJI | RGCY | 7 cut(s) | 182, 287, 294, 635, 815, 909, 945 |
| CviKI_1 | RGCY | 7 cut(s) | 182, 287, 294, 635, 815, 909, 945 |
| CviQI | GTAC | 3 cut(s) | 166, 222, 549 |
| DdeI | CTNAG | 2 cut(s) | 159, 816 |
| DpnI | GATC | 2 cut(s) | 438, 621 |
| DpnII | GATC | 2 cut(s) | 436, 619 |
| Eam1104I | CTCTTC | 1 cut(s) | 111 |
| EarI | CTCTTC | 1 cut(s) | 111 |
| FaeI | CATG | 4 cut(s) | 59, 332, 644, 923 |
| FatI | CATG | 4 cut(s) | 55, 328, 640, 919 |
| FauNDI | CATATG | 1 cut(s) | 837 |
| FblI | GTMKAC | 2 cut(s) | 567, 832 |
| Fnu4HI | GCNGC | 3 cut(s) | 60, 63, 321 |
| FokI | GGATG | 3 cut(s) | 27, 101, 758 |
| Fsp4HI | GCNGC | 3 cut(s) | 60, 63, 321 |
| FspBI | CTAG | 4 cut(s) | 552, 674, 828, 942 |
| GluI | GCNGC | 3 cut(s) | 60, 63, 321 |
| GsuI | CTGGAG | 1 cut(s) | 132 |
| HaeIII | GGCC | 1 cut(s) | 294 |
| HapII | CCGG | 1 cut(s) | 291 |
| HgaI | GACGC | 1 cut(s) | 547 |
| Hin1I | GRCGYC | 1 cut(s) | 558 |
| Hin1II | CATG | 4 cut(s) | 59, 332, 644, 923 |
| HincII | GTYRAC | 3 cut(s) | 343, 499, 796 |
| HindII | GTYRAC | 3 cut(s) | 343, 499, 796 |
| HinfI | GANTC | 1 cut(s) | 16 |
| HpaII | CCGG | 1 cut(s) | 291 |
| HphI | GGTGA | 2 cut(s) | 601, 860 |
| Hpy166II | GTNNAC | 6 cut(s) | 343, 499, 568, 582, 796, 833 |
| Hpy188I | TCNGA | 2 cut(s) | 384, 451 |
| Hpy188III | TCNNGA | 2 cut(s) | 149, 920 |
| Hpy8I | GTNNAC | 6 cut(s) | 343, 499, 568, 582, 796, 833 |
| HpyAV | CCTTC | 5 cut(s) | 45, 79, 131, 848, 890 |
| HpyCH4III | ACNGT | 7 cut(s) | 203, 229, 274, 455, 533, 722, 771 |
| HpyCH4IV | ACGT | 2 cut(s) | 369, 584 |
| HpyCH4V | TGCA | 3 cut(s) | 65, 418, 425 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 906 |
| HpyF3I | CTNAG | 2 cut(s) | 159, 816 |
| HpySE526I | ACGT | 2 cut(s) | 369, 584 |
| Hsp92I | GRCGYC | 1 cut(s) | 558 |
| Hsp92II | CATG | 4 cut(s) | 59, 332, 644, 923 |
| KpnI | GGTACC | 1 cut(s) | 225 |
| Kzo9I | GATC | 2 cut(s) | 436, 619 |
| LpnPI | CCDG | 5 cut(s) | 96, 111, 304, 534, 900 |
| Lsp1109I | GCAGC | 3 cut(s) | 46, 49, 307 |
| LweI | GCATC | 1 cut(s) | 667 |
| MaeI | CTAG | 4 cut(s) | 552, 674, 828, 942 |
| MaeII | ACGT | 2 cut(s) | 369, 584 |
| MaeIII | GTNAC | 1 cut(s) | 394 |
| MalI | GATC | 2 cut(s) | 438, 621 |
| MboI | GATC | 2 cut(s) | 436, 619 |
| MboII | GAAGA | 4 cut(s) | 128, 188, 209, 677 |
| MfeI | CAATTG | 1 cut(s) | 239 |
| MhlI | GDGCHC | 1 cut(s) | 707 |
| MluCI | AATT | 1 cut(s) | 239 |
| MlyI | GAGTC | 1 cut(s) | 25 |
| MmeI | TCCRAC | 1 cut(s) | 803 |
| MseI | TTAA | 4 cut(s) | 107, 248, 480, 755 |
| MslI | CAYNNNNRTG | 3 cut(s) | 333, 641, 921 |
| MspI | CCGG | 1 cut(s) | 291 |
| MunI | CAATTG | 1 cut(s) | 239 |
| Mva1269I | GAATGC | 2 cut(s) | 65, 943 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 906 |
| NdeI | CATATG | 1 cut(s) | 837 |
| NdeII | GATC | 2 cut(s) | 436, 619 |
| NheI | GCTAGC | 1 cut(s) | 941 |
| NlaIII | CATG | 4 cut(s) | 59, 332, 644, 923 |
| NlaIV | GGNNCC | 3 cut(s) | 223, 519, 704 |
| NspI | RCATGY | 2 cut(s) | 59, 644 |
| OliI | CACNNNNGTG | 1 cut(s) | 641 |
| PaeI | GCATGC | 1 cut(s) | 59 |
| PagI | TCATGA | 1 cut(s) | 919 |
| PciI | ACATGT | 1 cut(s) | 640 |
| PctI | GAATGC | 2 cut(s) | 65, 943 |
| PflFI | GACNNNGTC | 2 cut(s) | 203, 368 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 110 |
| PkrI | GCNGC | 3 cut(s) | 61, 64, 322 |
| PleI | GAGTC | 1 cut(s) | 24 |
| PpsI | GAGTC | 1 cut(s) | 24 |
| PscI | ACATGT | 1 cut(s) | 640 |
| PspN4I | GGNNCC | 3 cut(s) | 223, 519, 704 |
| PspPI | GGNCC | 1 cut(s) | 293 |
| PsyI | GACNNNGTC | 2 cut(s) | 203, 368 |
| RsaI | GTAC | 3 cut(s) | 167, 223, 550 |
| RsaNI | GTAC | 3 cut(s) | 166, 222, 549 |
| RseI | CAYNNNNRTG | 3 cut(s) | 333, 641, 921 |
| SaqAI | TTAA | 4 cut(s) | 107, 248, 480, 755 |
| SatI | GCNGC | 3 cut(s) | 60, 63, 321 |
| Sau3AI | GATC | 2 cut(s) | 436, 619 |
| Sau96I | GGNCC | 1 cut(s) | 293 |
| ScaI | AGTACT | 1 cut(s) | 550 |
| SchI | GAGTC | 1 cut(s) | 25 |
| SduI | GDGCHC | 1 cut(s) | 707 |
| SfaNI | GCATC | 1 cut(s) | 667 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 333, 641, 921 |
| SphI | GCATGC | 1 cut(s) | 59 |
| Sse9I | AATT | 1 cut(s) | 239 |
| SspI | AATATT | 1 cut(s) | 654 |
| SspMI | CTAG | 4 cut(s) | 552, 674, 828, 942 |
| TaaI | ACNGT | 7 cut(s) | 203, 229, 274, 455, 533, 722, 771 |
| TaiI | ACGT | 2 cut(s) | 372, 587 |
| TaqI | TCGA | 2 cut(s) | 69, 174 |
| TasI | AATT | 1 cut(s) | 239 |
| TatI | WGTACW | 2 cut(s) | 165, 548 |
| Tru1I | TTAA | 4 cut(s) | 107, 248, 480, 755 |
| Tru9I | TTAA | 4 cut(s) | 107, 248, 480, 755 |
| TscAI | CASTG | 2 cut(s) | 232, 528 |
| TseI | GCWGC | 3 cut(s) | 59, 62, 320 |
| TspDTI | ATGAA | 4 cut(s) | 366, 867, 909, 945 |
| TspRI | CASTG | 2 cut(s) | 232, 528 |
| Tth111I | GACNNNGTC | 2 cut(s) | 203, 368 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 110 |
| XceI | RCATGY | 2 cut(s) | 59, 644 |
| XmiI | GTMKAC | 2 cut(s) | 567, 832 |
| XspI | CTAG | 4 cut(s) | 552, 674, 828, 942 |
| ZrmI | AGTACT | 1 cut(s) | 550 |