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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 18, 511 |
| AciI | CCGC | 2 cut(s) | 18, 511 |
| AclWI | GGATC | 3 cut(s) | 286, 328, 371 |
| AcoI | YGGCCR | 1 cut(s) | 534 |
| AfaI | GTAC | 5 cut(s) | 101, 137, 239, 477, 518 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 496 |
| AflIII | ACRYGT | 1 cut(s) | 519 |
| AgsI | TTSAA | 1 cut(s) | 164 |
| AluBI | AGCT | 3 cut(s) | 74, 442, 542 |
| AluI | AGCT | 3 cut(s) | 74, 442, 542 |
| Alw26I | GTCTC | 1 cut(s) | 191 |
| AlwI | GGATC | 3 cut(s) | 286, 328, 371 |
| AoxI | GGCC | 2 cut(s) | 400, 534 |
| ApeKI | GCWGC | 1 cut(s) | 58 |
| AspLEI | GCGC | 1 cut(s) | 29 |
| AsuC2I | CCSGG | 1 cut(s) | 141 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 467, 500 |
| BbsI | GAAGAC | 3 cut(s) | 158, 263, 516 |
| BbvI | GCAGC | 1 cut(s) | 70 |
| BccI | CCATC | 2 cut(s) | 166, 392 |
| BceAI | ACGGC | 1 cut(s) | 549 |
| BciVI | GTATCC | 1 cut(s) | 311 |
| BcnI | CCSGG | 1 cut(s) | 141 |
| BcoDI | GTCTC | 1 cut(s) | 191 |
| BfmI | CTRYAG | 2 cut(s) | 233, 450 |
| BfuI | GTATCC | 1 cut(s) | 311 |
| BglII | AGATCT | 1 cut(s) | 310 |
| BisI | GCNGC | 1 cut(s) | 59 |
| BlsI | GCNGC | 1 cut(s) | 60 |
| Bme1390I | CCNGG | 1 cut(s) | 141 |
| BmrFI | CCNGG | 1 cut(s) | 141 |
| BpiI | GAAGAC | 3 cut(s) | 158, 263, 516 |
| BpmI | CTGGAG | 1 cut(s) | 527 |
| Bpu10I | CCTNAGC | 1 cut(s) | 48 |
| BpuEI | CTTGAG | 1 cut(s) | 15 |
| BpuMI | CCSGG | 1 cut(s) | 141 |
| BsaBI | GATNNNNATC | 1 cut(s) | 228 |
| BsaJI | CCNNGG | 2 cut(s) | 139, 259 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 500, 530 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 496 |
| Bse118I | RCCGGY | 1 cut(s) | 52 |
| Bse8I | GATNNNNATC | 1 cut(s) | 228 |
| BseDI | CCNNGG | 2 cut(s) | 139, 259 |
| BseJI | GATNNNNATC | 1 cut(s) | 228 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 496 |
| BseMII | CTCAG | 1 cut(s) | 39 |
| BseX3I | CGGCCG | 1 cut(s) | 534 |
| BseXI | GCAGC | 1 cut(s) | 70 |
| BsgI | GTGCAG | 1 cut(s) | 77 |
| Bsh1285I | CGRYCG | 2 cut(s) | 210, 537 |
| BshFI | GGCC | 2 cut(s) | 402, 536 |
| BsiEI | CGRYCG | 2 cut(s) | 210, 537 |
| BsiSI | CCGG | 2 cut(s) | 53, 141 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 496 |
| BsmAI | GTCTC | 1 cut(s) | 191 |
| BsnI | GGCC | 2 cut(s) | 402, 536 |
| Bsp1407I | TGTACA | 1 cut(s) | 516 |
| Bsp143I | GATC | 4 cut(s) | 291, 310, 333, 376 |
| BspACI | CCGC | 2 cut(s) | 18, 511 |
| BspANI | GGCC | 2 cut(s) | 402, 536 |
| BspCNI | CTCAG | 1 cut(s) | 40 |
| BspMAI | CTGCAG | 1 cut(s) | 454 |
| BspPI | GGATC | 3 cut(s) | 286, 328, 371 |
| BsrBI | CCGCTC | 2 cut(s) | 18, 511 |
| BsrFI | RCCGGY | 1 cut(s) | 52 |
| BsrGI | TGTACA | 1 cut(s) | 516 |
| BssAI | RCCGGY | 1 cut(s) | 52 |
| BssECI | CCNNGG | 2 cut(s) | 139, 259 |
| BssMI | GATC | 4 cut(s) | 291, 310, 333, 376 |
| Bst4CI | ACNGT | 7 cut(s) | 39, 85, 157, 211, 237, 244, 263 |
| Bst6I | CTCTTC | 1 cut(s) | 368 |
| BstAUI | TGTACA | 1 cut(s) | 516 |
| BstC8I | GCNNGC | 2 cut(s) | 114, 343 |
| BstDEI | CTNAG | 2 cut(s) | 48, 68 |
| BstDSI | CCRYGG | 1 cut(s) | 259 |
| BstHHI | GCGC | 1 cut(s) | 29 |
| BstKTI | GATC | 4 cut(s) | 294, 313, 336, 379 |
| BstMAI | GTCTC | 1 cut(s) | 191 |
| BstMBI | GATC | 4 cut(s) | 291, 310, 333, 376 |
| BstMCI | CGRYCG | 2 cut(s) | 210, 537 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 24, 58 |
| BstNSI | RCATGY | 3 cut(s) | 345, 414, 523 |
| BstSCI | CCNGG | 1 cut(s) | 139 |
| BstSFI | CTRYAG | 2 cut(s) | 233, 450 |
| BstV1I | GCAGC | 1 cut(s) | 70 |
| BstV2I | GAAGAC | 3 cut(s) | 158, 263, 516 |
| BstX2I | RGATCY | 4 cut(s) | 291, 310, 333, 376 |
| BstYI | RGATCY | 4 cut(s) | 291, 310, 333, 376 |
| BstZI | CGGCCG | 1 cut(s) | 534 |
| BsuI | GTATCC | 1 cut(s) | 311 |
| BsuRI | GGCC | 2 cut(s) | 402, 536 |
| BtgI | CCRYGG | 1 cut(s) | 259 |
| BtsIMutI | CAGTG | 3 cut(s) | 81, 240, 426 |
| Cac8I | GCNNGC | 2 cut(s) | 114, 343 |
| CfoI | GCGC | 1 cut(s) | 29 |
| Cfr10I | RCCGGY | 1 cut(s) | 52 |
| CseI | GACGC | 1 cut(s) | 416 |
| Csp6I | GTAC | 5 cut(s) | 100, 136, 238, 476, 517 |
| CviAII | CATG | 5 cut(s) | 297, 338, 342, 411, 520 |
| CviQI | GTAC | 5 cut(s) | 100, 136, 238, 476, 517 |
| DdeI | CTNAG | 2 cut(s) | 48, 68 |
| DpnI | GATC | 4 cut(s) | 293, 312, 335, 378 |
| DpnII | GATC | 4 cut(s) | 291, 310, 333, 376 |
| EaeI | YGGCCR | 1 cut(s) | 534 |
| EagI | CGGCCG | 1 cut(s) | 534 |
| Eam1104I | CTCTTC | 1 cut(s) | 368 |
| EarI | CTCTTC | 1 cut(s) | 368 |
| EclXI | CGGCCG | 1 cut(s) | 534 |
| Eco52I | CGGCCG | 1 cut(s) | 534 |
| EcoT22I | ATGCAT | 1 cut(s) | 343 |
| FaeI | CATG | 5 cut(s) | 300, 341, 345, 414, 523 |
| FatI | CATG | 5 cut(s) | 296, 337, 341, 410, 519 |
| Fnu4HI | GCNGC | 1 cut(s) | 59 |
| Fsp4HI | GCNGC | 1 cut(s) | 59 |
| GlaI | GCGC | 1 cut(s) | 28 |
| GluI | GCNGC | 1 cut(s) | 59 |
| GsuI | CTGGAG | 1 cut(s) | 527 |
| HaeIII | GGCC | 2 cut(s) | 402, 536 |
| HapII | CCGG | 2 cut(s) | 53, 141 |
| HgaI | GACGC | 1 cut(s) | 416 |
| HhaI | GCGC | 1 cut(s) | 29 |
| Hin1II | CATG | 5 cut(s) | 300, 341, 345, 414, 523 |
| Hin6I | GCGC | 1 cut(s) | 27 |
| HinP1I | GCGC | 1 cut(s) | 27 |
| HinfI | GANTC | 1 cut(s) | 445 |
| HpaII | CCGG | 2 cut(s) | 53, 141 |
| Hpy166II | GTNNAC | 2 cut(s) | 136, 240 |
| Hpy188I | TCNGA | 1 cut(s) | 150 |
| Hpy188III | TCNNGA | 4 cut(s) | 161, 304, 331, 380 |
| Hpy8I | GTNNAC | 2 cut(s) | 136, 240 |
| HpyAV | CCTTC | 4 cut(s) | 73, 208, 377, 466 |
| HpyCH4III | ACNGT | 7 cut(s) | 39, 85, 157, 211, 237, 244, 263 |
| HpyCH4IV | ACGT | 1 cut(s) | 177 |
| HpyCH4V | TGCA | 4 cut(s) | 58, 341, 345, 452 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 24, 58 |
| HpyF3I | CTNAG | 2 cut(s) | 48, 68 |
| HpySE526I | ACGT | 1 cut(s) | 177 |
| Hsp92II | CATG | 5 cut(s) | 300, 341, 345, 414, 523 |
| HspAI | GCGC | 1 cut(s) | 27 |
| Kzo9I | GATC | 4 cut(s) | 291, 310, 333, 376 |
| LmnI | GCTCC | 1 cut(s) | 508 |
| Lsp1109I | GCAGC | 1 cut(s) | 70 |
| MaeII | ACGT | 1 cut(s) | 177 |
| MaeIII | GTNAC | 1 cut(s) | 422 |
| MalI | GATC | 4 cut(s) | 293, 312, 335, 378 |
| MbiI | CCGCTC | 2 cut(s) | 18, 511 |
| MboI | GATC | 4 cut(s) | 291, 310, 333, 376 |
| MboII | GAAGA | 5 cut(s) | 163, 196, 263, 355, 516 |
| MflI | RGATCY | 4 cut(s) | 291, 310, 333, 376 |
| MlyI | GAGTC | 1 cut(s) | 439 |
| MmeI | TCCRAC | 1 cut(s) | 145 |
| MnlI | CCTC | 1 cut(s) | 489 |
| Mph1103I | ATGCAT | 1 cut(s) | 343 |
| MseI | TTAA | 1 cut(s) | 189 |
| MspI | CCGG | 2 cut(s) | 53, 141 |
| MspR9I | CCNGG | 1 cut(s) | 141 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 24, 58 |
| NciI | CCSGG | 1 cut(s) | 141 |
| NdeII | GATC | 4 cut(s) | 291, 310, 333, 376 |
| NlaIII | CATG | 5 cut(s) | 300, 341, 345, 414, 523 |
| NmuCI | GTSAC | 1 cut(s) | 422 |
| NsiI | ATGCAT | 1 cut(s) | 343 |
| NspI | RCATGY | 3 cut(s) | 345, 414, 523 |
| PaeI | GCATGC | 1 cut(s) | 345 |
| PciI | ACATGT | 1 cut(s) | 519 |
| PkrI | GCNGC | 1 cut(s) | 60 |
| PleI | GAGTC | 1 cut(s) | 439 |
| PpsI | GAGTC | 1 cut(s) | 439 |
| PscI | ACATGT | 1 cut(s) | 519 |
| PstI | CTGCAG | 1 cut(s) | 454 |
| PsuI | RGATCY | 4 cut(s) | 291, 310, 333, 376 |
| RsaI | GTAC | 5 cut(s) | 101, 137, 239, 477, 518 |
| RsaNI | GTAC | 5 cut(s) | 100, 136, 238, 476, 517 |
| SaqAI | TTAA | 1 cut(s) | 189 |
| SatI | GCNGC | 1 cut(s) | 59 |
| Sau3AI | GATC | 4 cut(s) | 291, 310, 333, 376 |
| SchI | GAGTC | 1 cut(s) | 439 |
| ScrFI | CCNGG | 1 cut(s) | 141 |
| SetI | ASST | 8 cut(s) | 76, 180, 396, 437, 444, 469, 477, 544 |
| SfcI | CTRYAG | 2 cut(s) | 233, 450 |
| SmlI | CTYRAG | 1 cut(s) | 30 |
| SmoI | CTYRAG | 1 cut(s) | 30 |
| SphI | GCATGC | 1 cut(s) | 345 |
| SsiI | CCGC | 2 cut(s) | 18, 511 |
| StyD4I | CCNGG | 1 cut(s) | 139 |
| TaaI | ACNGT | 7 cut(s) | 39, 85, 157, 211, 237, 244, 263 |
| TaiI | ACGT | 1 cut(s) | 180 |
| TaqI | TCGA | 2 cut(s) | 206, 248 |
| TatI | WGTACW | 3 cut(s) | 99, 237, 516 |
| Tru1I | TTAA | 1 cut(s) | 189 |
| Tru9I | TTAA | 1 cut(s) | 189 |
| TscAI | CASTG | 3 cut(s) | 88, 247, 433 |
| TseFI | GTSAC | 1 cut(s) | 422 |
| TseI | GCWGC | 1 cut(s) | 58 |
| Tsp45I | GTSAC | 1 cut(s) | 422 |
| TspDTI | ATGAA | 1 cut(s) | 197 |
| TspRI | CASTG | 3 cut(s) | 88, 247, 433 |
| XceI | RCATGY | 3 cut(s) | 345, 414, 523 |
| Zsp2I | ATGCAT | 1 cut(s) | 343 |