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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1220 |
| AclWI | GGATC | 2 cut(s) | 869, 1358 |
| AcoI | YGGCCR | 1 cut(s) | 1040 |
| AcsI | RAATTY | 1 cut(s) | 989 |
| AcuI | CTGAAG | 2 cut(s) | 669, 699 |
| AdeI | CACNNNGTG | 2 cut(s) | 794, 1158 |
| AfaI | GTAC | 4 cut(s) | 573, 590, 958, 1120 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 600 |
| AflIII | ACRYGT | 2 cut(s) | 689, 911 |
| AjiI | CACGTC | 1 cut(s) | 914 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 543, 575 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 847, 879 |
| AluBI | AGCT | 5 cut(s) | 223, 344, 554, 722, 977 |
| AluI | AGCT | 5 cut(s) | 223, 344, 554, 722, 977 |
| Alw26I | GTCTC | 3 cut(s) | 271, 940, 1207 |
| AlwI | GGATC | 2 cut(s) | 869, 1358 |
| AoxI | GGCC | 2 cut(s) | 565, 1040 |
| ApeKI | GCWGC | 3 cut(s) | 164, 719, 1345 |
| ApoI | RAATTY | 1 cut(s) | 989 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 933 |
| AspS9I | GGNCC | 5 cut(s) | 368, 566, 613, 1258, 1293 |
| AsuHPI | GGTGA | 5 cut(s) | 518, 530, 806, 1007, 1033 |
| AsuII | TTCGAA | 1 cut(s) | 597 |
| AvaII | GGWCC | 4 cut(s) | 368, 613, 1258, 1293 |
| BbvI | GCAGC | 3 cut(s) | 176, 731, 1357 |
| BccI | CCATC | 6 cut(s) | 97, 230, 414, 963, 1186, 1307 |
| BciVI | GTATCC | 1 cut(s) | 698 |
| BcoDI | GTCTC | 3 cut(s) | 271, 940, 1207 |
| BfaI | CTAG | 5 cut(s) | 741, 776, 830, 1002, 1238 |
| BfmI | CTRYAG | 1 cut(s) | 441 |
| BfuI | GTATCC | 1 cut(s) | 698 |
| BisI | GCNGC | 3 cut(s) | 165, 720, 1346 |
| BlsI | GCNGC | 3 cut(s) | 166, 721, 1347 |
| BmcAI | AGTACT | 1 cut(s) | 958 |
| Bme18I | GGWCC | 4 cut(s) | 368, 613, 1258, 1293 |
| BmgBI | CACGTC | 1 cut(s) | 914 |
| BmgT120I | GGNCC | 5 cut(s) | 368, 566, 613, 1258, 1293 |
| BmiI | GGNNCC | 3 cut(s) | 142, 1260, 1294 |
| BmsI | GCATC | 4 cut(s) | 39, 151, 644, 1357 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1245 |
| Bpu14I | TTCGAA | 1 cut(s) | 597 |
| Bsa29I | ATCGAT | 3 cut(s) | 637, 844, 1090 |
| BsaAI | YACGTR | 1 cut(s) | 175 |
| BsaJI | CCNNGG | 1 cut(s) | 878 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 600 |
| Bse1I | ACTGG | 1 cut(s) | 1296 |
| Bse3DI | GCAATG | 2 cut(s) | 657, 754 |
| BseCI | ATCGAT | 3 cut(s) | 637, 844, 1090 |
| BseDI | CCNNGG | 1 cut(s) | 878 |
| BseGI | GGATG | 3 cut(s) | 591, 659, 974 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 600 |
| BseMI | GCAATG | 2 cut(s) | 657, 754 |
| BseMII | CTCAG | 1 cut(s) | 1092 |
| BseNI | ACTGG | 1 cut(s) | 1296 |
| BseXI | GCAGC | 3 cut(s) | 176, 731, 1357 |
| BshFI | GGCC | 2 cut(s) | 567, 1042 |
| BshVI | ATCGAT | 3 cut(s) | 637, 844, 1090 |
| BslFI | GGGAC | 2 cut(s) | 1244, 1306 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 600 |
| BsmAI | GTCTC | 3 cut(s) | 271, 940, 1207 |
| BsmFI | GGGAC | 2 cut(s) | 1244, 1306 |
| BsnI | GGCC | 2 cut(s) | 567, 1042 |
| Bsp119I | TTCGAA | 1 cut(s) | 597 |
| Bsp1407I | TGTACA | 1 cut(s) | 571 |
| Bsp143I | GATC | 4 cut(s) | 285, 638, 874, 1363 |
| Bsp19I | CCATGG | 1 cut(s) | 878 |
| BspANI | GGCC | 2 cut(s) | 567, 1042 |
| BspCNI | CTCAG | 1 cut(s) | 1093 |
| BspDI | ATCGAT | 3 cut(s) | 637, 844, 1090 |
| BspLI | GGNNCC | 3 cut(s) | 142, 1260, 1294 |
| BspPI | GGATC | 2 cut(s) | 869, 1358 |
| BspT104I | TTCGAA | 1 cut(s) | 597 |
| BsrDI | GCAATG | 2 cut(s) | 657, 754 |
| BsrGI | TGTACA | 1 cut(s) | 571 |
| BsrI | ACTGG | 1 cut(s) | 1296 |
| BssECI | CCNNGG | 1 cut(s) | 878 |
| BssMI | GATC | 4 cut(s) | 285, 638, 874, 1363 |
| BssT1I | CCWWGG | 1 cut(s) | 878 |
| Bst4CI | ACNGT | 2 cut(s) | 1021, 1109 |
| Bst6I | CTCTTC | 1 cut(s) | 675 |
| BstAUI | TGTACA | 1 cut(s) | 571 |
| BstBAI | YACGTR | 1 cut(s) | 175 |
| BstBI | TTCGAA | 1 cut(s) | 597 |
| BstDEI | CTNAG | 3 cut(s) | 224, 953, 1101 |
| BstDSI | CCRYGG | 1 cut(s) | 878 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 598 |
| BstF5I | GGATG | 3 cut(s) | 591, 659, 974 |
| BstKTI | GATC | 4 cut(s) | 288, 641, 877, 1366 |
| BstMAI | GTCTC | 3 cut(s) | 271, 940, 1207 |
| BstMBI | GATC | 4 cut(s) | 285, 638, 874, 1363 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 36, 229, 551, 1385 |
| BstNSI | RCATGY | 1 cut(s) | 394 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1245 |
| BstSFI | CTRYAG | 1 cut(s) | 441 |
| BstV1I | GCAGC | 3 cut(s) | 176, 731, 1357 |
| BstX2I | RGATCY | 1 cut(s) | 1363 |
| BstYI | RGATCY | 1 cut(s) | 1363 |
| Bsu15I | ATCGAT | 3 cut(s) | 637, 844, 1090 |
| BsuI | GTATCC | 1 cut(s) | 698 |
| BsuRI | GGCC | 2 cut(s) | 567, 1042 |
| BsuTUI | ATCGAT | 3 cut(s) | 637, 844, 1090 |
| BtgI | CCRYGG | 1 cut(s) | 878 |
| BtrI | CACGTC | 1 cut(s) | 914 |
| BtsCI | GGATG | 3 cut(s) | 591, 659, 974 |
| BtsIMutI | CAGTG | 1 cut(s) | 1114 |
| Cfr13I | GGNCC | 5 cut(s) | 368, 566, 613, 1258, 1293 |
| ClaI | ATCGAT | 3 cut(s) | 637, 844, 1090 |
| CseI | GACGC | 1 cut(s) | 753 |
| Csp6I | GTAC | 4 cut(s) | 572, 589, 957, 1119 |
| CviAII | CATG | 6 cut(s) | 52, 289, 391, 764, 826, 879 |
| CviQI | GTAC | 4 cut(s) | 572, 589, 957, 1119 |
| DdeI | CTNAG | 3 cut(s) | 224, 953, 1101 |
| DpnI | GATC | 4 cut(s) | 287, 640, 876, 1365 |
| DpnII | GATC | 4 cut(s) | 285, 638, 874, 1363 |
| DraI | TTTAAA | 2 cut(s) | 96, 348 |
| DraIII | CACNNNGTG | 2 cut(s) | 794, 1158 |
| EaeI | YGGCCR | 1 cut(s) | 1040 |
| Eam1104I | CTCTTC | 1 cut(s) | 675 |
| EarI | CTCTTC | 1 cut(s) | 675 |
| Eco130I | CCWWGG | 1 cut(s) | 878 |
| Eco47I | GGWCC | 4 cut(s) | 368, 613, 1258, 1293 |
| Eco57I | CTGAAG | 2 cut(s) | 669, 699 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 598 |
| EcoO109I | RGGNCCY | 2 cut(s) | 613, 1258 |
| EcoT14I | CCWWGG | 1 cut(s) | 878 |
| EcoT22I | ATGCAT | 1 cut(s) | 659 |
| ErhI | CCWWGG | 1 cut(s) | 878 |
| FaeI | CATG | 6 cut(s) | 55, 292, 394, 767, 829, 882 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 59, 91 |
| FaqI | GGGAC | 2 cut(s) | 1244, 1306 |
| FatI | CATG | 6 cut(s) | 51, 288, 390, 763, 825, 878 |
| Fnu4HI | GCNGC | 3 cut(s) | 165, 720, 1346 |
| FokI | GGATG | 3 cut(s) | 598, 666, 981 |
| Fsp4HI | GCNGC | 3 cut(s) | 165, 720, 1346 |
| FspBI | CTAG | 5 cut(s) | 741, 776, 830, 1002, 1238 |
| GluI | GCNGC | 3 cut(s) | 165, 720, 1346 |
| HaeIII | GGCC | 2 cut(s) | 567, 1042 |
| HgaI | GACGC | 1 cut(s) | 753 |
| Hin1II | CATG | 6 cut(s) | 55, 292, 394, 767, 829, 882 |
| HinfI | GANTC | 3 cut(s) | 331, 998, 1200 |
| HphI | GGTGA | 5 cut(s) | 518, 530, 806, 1007, 1033 |
| Hpy166II | GTNNAC | 4 cut(s) | 526, 855, 1121, 1330 |
| Hpy188I | TCNGA | 6 cut(s) | 87, 420, 868, 907, 1015, 1098 |
| Hpy188III | TCNNGA | 5 cut(s) | 452, 917, 938, 1002, 1408 |
| Hpy8I | GTNNAC | 4 cut(s) | 526, 855, 1121, 1330 |
| HpyAV | CCTTC | 7 cut(s) | 49, 181, 604, 604, 644, 773, 944 |
| HpyCH4III | ACNGT | 2 cut(s) | 1021, 1109 |
| HpyCH4IV | ACGT | 4 cut(s) | 174, 315, 691, 913 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 36, 229, 551, 1385 |
| HpyF3I | CTNAG | 3 cut(s) | 224, 953, 1101 |
| HpySE526I | ACGT | 4 cut(s) | 174, 315, 691, 913 |
| Hsp92II | CATG | 6 cut(s) | 55, 292, 394, 767, 829, 882 |
| Kzo9I | GATC | 4 cut(s) | 285, 638, 874, 1363 |
| LmnI | GCTCC | 1 cut(s) | 716 |
| LpnPI | CCDG | 9 cut(s) | 157, 246, 429, 582, 660, 1053, 1241, 1309, 1379 |
| Lsp1109I | GCAGC | 3 cut(s) | 176, 731, 1357 |
| LweI | GCATC | 4 cut(s) | 39, 151, 644, 1357 |
| MaeI | CTAG | 5 cut(s) | 741, 776, 830, 1002, 1238 |
| MaeII | ACGT | 4 cut(s) | 174, 315, 691, 913 |
| MaeIII | GTNAC | 1 cut(s) | 300 |
| MalI | GATC | 4 cut(s) | 287, 640, 876, 1365 |
| MboI | GATC | 4 cut(s) | 285, 638, 874, 1363 |
| MboII | GAAGA | 9 cut(s) | 205, 208, 445, 470, 692, 813, 814, 902, 1322 |
| MflI | RGATCY | 1 cut(s) | 1363 |
| MlyI | GAGTC | 1 cut(s) | 1209 |
| MmeI | TCCRAC | 2 cut(s) | 65, 563 |
| MnlI | CCTC | 6 cut(s) | 510, 514, 745, 790, 880, 1096 |
| Mph1103I | ATGCAT | 1 cut(s) | 659 |
| MroXI | GAANNNNTTC | 1 cut(s) | 933 |
| MseI | TTAA | 5 cut(s) | 95, 111, 347, 711, 987 |
| MspA1I | CMGCKG | 1 cut(s) | 722 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 36, 229, 551, 1385 |
| NcoI | CCATGG | 1 cut(s) | 878 |
| NdeII | GATC | 4 cut(s) | 285, 638, 874, 1363 |
| NlaIII | CATG | 6 cut(s) | 55, 292, 394, 767, 829, 882 |
| NlaIV | GGNNCC | 3 cut(s) | 142, 1260, 1294 |
| NmuCI | GTSAC | 1 cut(s) | 300 |
| NsiI | ATGCAT | 1 cut(s) | 659 |
| NspI | RCATGY | 1 cut(s) | 394 |
| NspV | TTCGAA | 1 cut(s) | 597 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 312 |
| PdmI | GAANNNNTTC | 1 cut(s) | 933 |
| PfeI | GAWTC | 2 cut(s) | 331, 998 |
| PkrI | GCNGC | 3 cut(s) | 166, 721, 1347 |
| PleI | GAGTC | 1 cut(s) | 1208 |
| PpsI | GAGTC | 1 cut(s) | 1208 |
| Ppu21I | YACGTR | 1 cut(s) | 175 |
| PpuMI | RGGWCCY | 2 cut(s) | 613, 1258 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1245 |
| PsiI | TTATAA | 1 cut(s) | 1220 |
| Psp5II | RGGWCCY | 2 cut(s) | 613, 1258 |
| PspN4I | GGNNCC | 3 cut(s) | 142, 1260, 1294 |
| PspPI | GGNCC | 5 cut(s) | 368, 566, 613, 1258, 1293 |
| PspPPI | RGGWCCY | 2 cut(s) | 613, 1258 |
| PsuI | RGATCY | 1 cut(s) | 1363 |
| PvuII | CAGCTG | 1 cut(s) | 722 |
| RsaI | GTAC | 4 cut(s) | 573, 590, 958, 1120 |
| RsaNI | GTAC | 4 cut(s) | 572, 589, 957, 1119 |
| SaqAI | TTAA | 5 cut(s) | 95, 111, 347, 711, 987 |
| SatI | GCNGC | 3 cut(s) | 165, 720, 1346 |
| Sau3AI | GATC | 4 cut(s) | 285, 638, 874, 1363 |
| Sau96I | GGNCC | 5 cut(s) | 368, 566, 613, 1258, 1293 |
| ScaI | AGTACT | 1 cut(s) | 958 |
| SchI | GAGTC | 1 cut(s) | 1209 |
| SfaNI | GCATC | 4 cut(s) | 39, 151, 644, 1357 |
| SfcI | CTRYAG | 1 cut(s) | 441 |
| SfuI | TTCGAA | 1 cut(s) | 597 |
| SinI | GGWCC | 4 cut(s) | 368, 613, 1258, 1293 |
| SspMI | CTAG | 5 cut(s) | 741, 776, 830, 1002, 1238 |
| StyI | CCWWGG | 1 cut(s) | 878 |
| TaaI | ACNGT | 2 cut(s) | 1021, 1109 |
| TaiI | ACGT | 4 cut(s) | 177, 318, 694, 916 |
| TaqI | TCGA | 5 cut(s) | 597, 637, 844, 1090, 1162 |
| TatI | WGTACW | 3 cut(s) | 571, 956, 1118 |
| TfiI | GAWTC | 2 cut(s) | 331, 998 |
| Tru1I | TTAA | 5 cut(s) | 95, 111, 347, 711, 987 |
| Tru9I | TTAA | 5 cut(s) | 95, 111, 347, 711, 987 |
| TscAI | CASTG | 1 cut(s) | 1114 |
| TseFI | GTSAC | 1 cut(s) | 300 |
| TseI | GCWGC | 3 cut(s) | 164, 719, 1345 |
| Tsp45I | GTSAC | 1 cut(s) | 300 |
| TspDTI | ATGAA | 6 cut(s) | 68, 471, 623, 780, 942, 1063 |
| TspRI | CASTG | 1 cut(s) | 1114 |
| VpaK11BI | GGWCC | 4 cut(s) | 368, 613, 1258, 1293 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 598 |
| XapI | RAATTY | 1 cut(s) | 989 |
| XbaI | TCTAGA | 1 cut(s) | 1001 |
| XceI | RCATGY | 1 cut(s) | 394 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1303 |
| XmnI | GAANNNNTTC | 1 cut(s) | 933 |
| XspI | CTAG | 5 cut(s) | 741, 776, 830, 1002, 1238 |
| ZrmI | AGTACT | 1 cut(s) | 958 |
| Zsp2I | ATGCAT | 1 cut(s) | 659 |