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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 45, 66, 948 |
| AccIII | TCCGGA | 1 cut(s) | 1264 |
| AciI | CCGC | 2 cut(s) | 594, 1317 |
| AclWI | GGATC | 3 cut(s) | 1256, 1286, 1299 |
| AcsI | RAATTY | 2 cut(s) | 405, 568 |
| AcuI | CTGAAG | 1 cut(s) | 90 |
| AcyI | GRCGYC | 2 cut(s) | 543, 1306 |
| AfaI | GTAC | 8 cut(s) | 269, 282, 500, 512, 591, 735, 1055, 1064 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 539, 599 |
| AgsI | TTSAA | 4 cut(s) | 126, 573, 922, 1090 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 856, 897, 1310 |
| AhlI | ACTAGT | 1 cut(s) | 1130 |
| AleI | CACNNNNGTG | 1 cut(s) | 752 |
| AluBI | AGCT | 9 cut(s) | 329, 630, 764, 774, 791, 823, 935, 958, 984 |
| AluI | AGCT | 9 cut(s) | 329, 630, 764, 774, 791, 823, 935, 958, 984 |
| Alw26I | GTCTC | 2 cut(s) | 550, 574 |
| AlwI | GGATC | 3 cut(s) | 1256, 1286, 1299 |
| Ama87I | CYCGRG | 1 cut(s) | 271 |
| Aor13HI | TCCGGA | 1 cut(s) | 1264 |
| AoxI | GGCC | 2 cut(s) | 426, 1163 |
| ApeKI | GCWGC | 2 cut(s) | 350, 698 |
| ApoI | RAATTY | 2 cut(s) | 405, 568 |
| AseI | ATTAAT | 1 cut(s) | 972 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 568 |
| AsuC2I | CCSGG | 2 cut(s) | 272, 273 |
| AsuHPI | GGTGA | 2 cut(s) | 319, 614 |
| AvaI | CYCGRG | 1 cut(s) | 271 |
| AxyI | CCTNAGG | 1 cut(s) | 130 |
| BaeGI | GKGCMC | 1 cut(s) | 448 |
| BamHI | GGATCC | 1 cut(s) | 1291 |
| BbsI | GAAGAC | 2 cut(s) | 440, 1309 |
| BbvI | GCAGC | 2 cut(s) | 337, 685 |
| BccI | CCATC | 3 cut(s) | 182, 448, 920 |
| BcnI | CCSGG | 2 cut(s) | 272, 273 |
| BcoDI | GTCTC | 2 cut(s) | 550, 574 |
| BcuI | ACTAGT | 1 cut(s) | 1130 |
| BfaI | CTAG | 4 cut(s) | 449, 549, 1097, 1131 |
| BfmI | CTRYAG | 1 cut(s) | 631 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1314 |
| BisI | GCNGC | 2 cut(s) | 351, 699 |
| BlsI | GCNGC | 2 cut(s) | 352, 700 |
| Bme1390I | CCNGG | 2 cut(s) | 272, 273 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 856, 897, 1310 |
| BmeT110I | CYCGRG | 1 cut(s) | 271 |
| BmiI | GGNNCC | 2 cut(s) | 1039, 1293 |
| BmrFI | CCNGG | 2 cut(s) | 272, 273 |
| BmsI | GCATC | 3 cut(s) | 337, 394, 1241 |
| BpiI | GAAGAC | 2 cut(s) | 440, 1309 |
| BpmI | CTGGAG | 1 cut(s) | 807 |
| Bpu10I | CCTNAGC | 1 cut(s) | 597 |
| BpuMI | CCSGG | 2 cut(s) | 272, 273 |
| Bsa29I | ATCGAT | 1 cut(s) | 1260 |
| BsaHI | GRCGYC | 2 cut(s) | 543, 1306 |
| BsaJI | CCNNGG | 1 cut(s) | 271 |
| BsaWI | WCCGGW | 1 cut(s) | 1264 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 539, 599 |
| Bse1I | ACTGG | 1 cut(s) | 790 |
| Bse21I | CCTNAGG | 1 cut(s) | 130 |
| Bse3DI | GCAATG | 2 cut(s) | 232, 1131 |
| BseAI | TCCGGA | 1 cut(s) | 1264 |
| BseCI | ATCGAT | 1 cut(s) | 1260 |
| BseDI | CCNNGG | 1 cut(s) | 271 |
| BseGI | GGATG | 3 cut(s) | 163, 459, 1251 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 539, 599 |
| BseMI | GCAATG | 2 cut(s) | 232, 1131 |
| BseMII | CTCAG | 1 cut(s) | 144 |
| BseNI | ACTGG | 1 cut(s) | 790 |
| BseSI | GKGCMC | 1 cut(s) | 448 |
| BseXI | GCAGC | 2 cut(s) | 337, 685 |
| BshFI | GGCC | 2 cut(s) | 428, 1165 |
| BshVI | ATCGAT | 1 cut(s) | 1260 |
| BsiHKCI | CYCGRG | 1 cut(s) | 271 |
| BsiSI | CCGG | 2 cut(s) | 272, 1265 |
| BslFI | GGGAC | 1 cut(s) | 670 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 539, 599 |
| BsmAI | GTCTC | 2 cut(s) | 550, 574 |
| BsmBI | CGTCTC | 1 cut(s) | 550 |
| BsmFI | GGGAC | 1 cut(s) | 670 |
| BsnI | GGCC | 2 cut(s) | 428, 1165 |
| BsoBI | CYCGRG | 1 cut(s) | 271 |
| Bsp1286I | GDGCHC | 1 cut(s) | 448 |
| Bsp13I | TCCGGA | 1 cut(s) | 1264 |
| Bsp1407I | TGTACA | 3 cut(s) | 498, 733, 1053 |
| Bsp143I | GATC | 5 cut(s) | 744, 1180, 1257, 1261, 1291 |
| BspACI | CCGC | 2 cut(s) | 594, 1317 |
| BspANI | GGCC | 2 cut(s) | 428, 1165 |
| BspCNI | CTCAG | 1 cut(s) | 143 |
| BspDI | ATCGAT | 1 cut(s) | 1260 |
| BspEI | TCCGGA | 1 cut(s) | 1264 |
| BspLI | GGNNCC | 2 cut(s) | 1039, 1293 |
| BspPI | GGATC | 3 cut(s) | 1256, 1286, 1299 |
| BspQI | GCTCTTC | 1 cut(s) | 948 |
| BsrDI | GCAATG | 2 cut(s) | 232, 1131 |
| BsrGI | TGTACA | 3 cut(s) | 498, 733, 1053 |
| BsrI | ACTGG | 1 cut(s) | 790 |
| BssECI | CCNNGG | 1 cut(s) | 271 |
| BssMI | GATC | 5 cut(s) | 744, 1180, 1257, 1261, 1291 |
| BssNI | GRCGYC | 2 cut(s) | 543, 1306 |
| Bst4CI | ACNGT | 4 cut(s) | 285, 510, 873, 1255 |
| Bst6I | CTCTTC | 2 cut(s) | 837, 948 |
| BstACI | GRCGYC | 2 cut(s) | 543, 1306 |
| BstAUI | TGTACA | 3 cut(s) | 498, 733, 1053 |
| BstDEI | CTNAG | 4 cut(s) | 130, 597, 978, 997 |
| BstEII | GGTNACC | 1 cut(s) | 873 |
| BstF5I | GGATG | 3 cut(s) | 163, 459, 1251 |
| BstKTI | GATC | 5 cut(s) | 747, 1183, 1260, 1264, 1294 |
| BstMAI | GTCTC | 2 cut(s) | 550, 574 |
| BstMBI | GATC | 5 cut(s) | 744, 1180, 1257, 1261, 1291 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1314 |
| BstNSI | RCATGY | 2 cut(s) | 476, 480 |
| BstPI | GGTNACC | 1 cut(s) | 873 |
| BstSCI | CCNGG | 2 cut(s) | 270, 271 |
| BstSFI | CTRYAG | 1 cut(s) | 631 |
| BstSLI | GKGCMC | 1 cut(s) | 448 |
| BstV1I | GCAGC | 2 cut(s) | 337, 685 |
| BstV2I | GAAGAC | 2 cut(s) | 440, 1309 |
| BstX2I | RGATCY | 1 cut(s) | 1291 |
| BstYI | RGATCY | 1 cut(s) | 1291 |
| Bsu15I | ATCGAT | 1 cut(s) | 1260 |
| Bsu36I | CCTNAGG | 1 cut(s) | 130 |
| BsuRI | GGCC | 2 cut(s) | 428, 1165 |
| BsuTUI | ATCGAT | 1 cut(s) | 1260 |
| BtsCI | GGATG | 3 cut(s) | 163, 459, 1251 |
| BtsI | GCAGTG | 1 cut(s) | 1341 |
| BtsIMutI | CAGTG | 1 cut(s) | 1341 |
| Cfr9I | CCCGGG | 1 cut(s) | 271 |
| ClaI | ATCGAT | 1 cut(s) | 1260 |
| CseI | GACGC | 2 cut(s) | 532, 1314 |
| Csp6I | GTAC | 8 cut(s) | 268, 281, 499, 511, 590, 734, 1054, 1063 |
| CviAII | CATG | 8 cut(s) | 83, 335, 473, 477, 1021, 1057, 1070, 1102 |
| CviQI | GTAC | 8 cut(s) | 268, 281, 499, 511, 590, 734, 1054, 1063 |
| DdeI | CTNAG | 4 cut(s) | 130, 597, 978, 997 |
| DpnI | GATC | 5 cut(s) | 746, 1182, 1259, 1263, 1293 |
| DpnII | GATC | 5 cut(s) | 744, 1180, 1257, 1261, 1291 |
| DraI | TTTAAA | 2 cut(s) | 324, 1360 |
| DriI | GACNNNNNGTC | 3 cut(s) | 856, 897, 1310 |
| Eam1104I | CTCTTC | 2 cut(s) | 837, 948 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 856, 897, 1310 |
| EarI | CTCTTC | 2 cut(s) | 837, 948 |
| EciI | GGCGGA | 1 cut(s) | 1332 |
| Eco147I | AGGCCT | 1 cut(s) | 1165 |
| Eco57I | CTGAAG | 1 cut(s) | 90 |
| Eco81I | CCTNAGG | 1 cut(s) | 130 |
| Eco88I | CYCGRG | 1 cut(s) | 271 |
| Eco91I | GGTNACC | 1 cut(s) | 873 |
| EcoO65I | GGTNACC | 1 cut(s) | 873 |
| EcoT22I | ATGCAT | 2 cut(s) | 478, 1234 |
| Esp3I | CGTCTC | 1 cut(s) | 550 |
| FaeI | CATG | 8 cut(s) | 86, 338, 476, 480, 1024, 1060, 1073, 1105 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 942, 974 |
| FaqI | GGGAC | 1 cut(s) | 670 |
| FatI | CATG | 8 cut(s) | 82, 334, 472, 476, 1020, 1056, 1069, 1101 |
| FauI | CCCGC | 1 cut(s) | 601 |
| Fnu4HI | GCNGC | 2 cut(s) | 351, 699 |
| FokI | GGATG | 3 cut(s) | 170, 466, 1258 |
| Fsp4HI | GCNGC | 2 cut(s) | 351, 699 |
| FspBI | CTAG | 4 cut(s) | 449, 549, 1097, 1131 |
| GluI | GCNGC | 2 cut(s) | 351, 699 |
| GsuI | CTGGAG | 1 cut(s) | 807 |
| HaeIII | GGCC | 2 cut(s) | 428, 1165 |
| HapII | CCGG | 2 cut(s) | 272, 1265 |
| HgaI | GACGC | 2 cut(s) | 532, 1314 |
| Hin1I | GRCGYC | 2 cut(s) | 543, 1306 |
| Hin1II | CATG | 8 cut(s) | 86, 338, 476, 480, 1024, 1060, 1073, 1105 |
| HincII | GTYRAC | 2 cut(s) | 1251, 1339 |
| HindII | GTYRAC | 2 cut(s) | 1251, 1339 |
| HinfI | GANTC | 9 cut(s) | 31, 122, 143, 149, 658, 721, 817, 833, 866 |
| HpaII | CCGG | 2 cut(s) | 272, 1265 |
| HphI | GGTGA | 2 cut(s) | 319, 614 |
| Hpy166II | GTNNAC | 5 cut(s) | 281, 288, 590, 1251, 1339 |
| Hpy188I | TCNGA | 6 cut(s) | 148, 196, 220, 361, 838, 1209 |
| Hpy188III | TCNNGA | 3 cut(s) | 392, 748, 1265 |
| Hpy8I | GTNNAC | 5 cut(s) | 281, 288, 590, 1251, 1339 |
| HpyAV | CCTTC | 2 cut(s) | 389, 908 |
| HpyCH4III | ACNGT | 4 cut(s) | 285, 510, 873, 1255 |
| HpyCH4IV | ACGT | 1 cut(s) | 893 |
| HpyCH4V | TGCA | 9 cut(s) | 225, 476, 492, 856, 889, 1069, 1124, 1154, 1232 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1314 |
| HpyF3I | CTNAG | 4 cut(s) | 130, 597, 978, 997 |
| HpySE526I | ACGT | 1 cut(s) | 893 |
| Hsp92I | GRCGYC | 2 cut(s) | 543, 1306 |
| Hsp92II | CATG | 8 cut(s) | 86, 338, 476, 480, 1024, 1060, 1073, 1105 |
| Kpn2I | TCCGGA | 1 cut(s) | 1264 |
| Kzo9I | GATC | 5 cut(s) | 744, 1180, 1257, 1261, 1291 |
| LguI | GCTCTTC | 1 cut(s) | 948 |
| LmnI | GCTCC | 3 cut(s) | 382, 771, 788 |
| Lsp1109I | GCAGC | 2 cut(s) | 337, 685 |
| LweI | GCATC | 3 cut(s) | 337, 394, 1241 |
| MaeI | CTAG | 4 cut(s) | 449, 549, 1097, 1131 |
| MaeII | ACGT | 1 cut(s) | 893 |
| MaeIII | GTNAC | 5 cut(s) | 602, 650, 858, 873, 1218 |
| MalI | GATC | 5 cut(s) | 746, 1182, 1259, 1263, 1293 |
| MboI | GATC | 5 cut(s) | 744, 1180, 1257, 1261, 1291 |
| MboII | GAAGA | 8 cut(s) | 380, 445, 478, 527, 851, 854, 965, 1314 |
| MfeI | CAATTG | 1 cut(s) | 526 |
| MflI | RGATCY | 1 cut(s) | 1291 |
| MhlI | GDGCHC | 1 cut(s) | 448 |
| MluCI | AATT | 6 cut(s) | 319, 405, 526, 568, 884, 1275 |
| MlyI | GAGTC | 2 cut(s) | 25, 652 |
| Mph1103I | ATGCAT | 2 cut(s) | 478, 1234 |
| MroI | TCCGGA | 1 cut(s) | 1264 |
| MroXI | GAANNNNTTC | 1 cut(s) | 568 |
| MseI | TTAA | 6 cut(s) | 27, 234, 323, 972, 1079, 1359 |
| MslI | CAYNNNNRTG | 3 cut(s) | 220, 752, 1352 |
| MspI | CCGG | 2 cut(s) | 272, 1265 |
| MspR9I | CCNGG | 2 cut(s) | 272, 273 |
| MunI | CAATTG | 1 cut(s) | 526 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1314 |
| NciI | CCSGG | 2 cut(s) | 272, 273 |
| NdeII | GATC | 5 cut(s) | 744, 1180, 1257, 1261, 1291 |
| NlaIII | CATG | 8 cut(s) | 86, 338, 476, 480, 1024, 1060, 1073, 1105 |
| NlaIV | GGNNCC | 2 cut(s) | 1039, 1293 |
| NmuCI | GTSAC | 3 cut(s) | 602, 650, 858 |
| NsiI | ATGCAT | 2 cut(s) | 478, 1234 |
| NspI | RCATGY | 2 cut(s) | 476, 480 |
| OliI | CACNNNNGTG | 1 cut(s) | 752 |
| PceI | AGGCCT | 1 cut(s) | 1165 |
| PciSI | GCTCTTC | 1 cut(s) | 948 |
| PdmI | GAANNNNTTC | 1 cut(s) | 568 |
| PfeI | GAWTC | 7 cut(s) | 122, 143, 149, 721, 817, 833, 866 |
| PkrI | GCNGC | 2 cut(s) | 352, 700 |
| PleI | GAGTC | 2 cut(s) | 25, 652 |
| PpsI | GAGTC | 2 cut(s) | 25, 652 |
| PshBI | ATTAAT | 1 cut(s) | 972 |
| PsiI | TTATAA | 3 cut(s) | 45, 66, 948 |
| PspEI | GGTNACC | 1 cut(s) | 873 |
| PspN4I | GGNNCC | 2 cut(s) | 1039, 1293 |
| PsuI | RGATCY | 1 cut(s) | 1291 |
| RsaI | GTAC | 8 cut(s) | 269, 282, 500, 512, 591, 735, 1055, 1064 |
| RsaNI | GTAC | 8 cut(s) | 268, 281, 499, 511, 590, 734, 1054, 1063 |
| RseI | CAYNNNNRTG | 3 cut(s) | 220, 752, 1352 |
| SapI | GCTCTTC | 1 cut(s) | 948 |
| SaqAI | TTAA | 6 cut(s) | 27, 234, 323, 972, 1079, 1359 |
| SatI | GCNGC | 2 cut(s) | 351, 699 |
| Sau3AI | GATC | 5 cut(s) | 744, 1180, 1257, 1261, 1291 |
| SchI | GAGTC | 2 cut(s) | 25, 652 |
| ScrFI | CCNGG | 2 cut(s) | 272, 273 |
| SduI | GDGCHC | 1 cut(s) | 448 |
| SfaNI | GCATC | 3 cut(s) | 337, 394, 1241 |
| SfcI | CTRYAG | 1 cut(s) | 631 |
| SmaI | CCCGGG | 1 cut(s) | 273 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 220, 752, 1352 |
| SpeI | ACTAGT | 1 cut(s) | 1130 |
| Sse9I | AATT | 6 cut(s) | 319, 405, 526, 568, 884, 1275 |
| SseBI | AGGCCT | 1 cut(s) | 1165 |
| SsiI | CCGC | 2 cut(s) | 594, 1317 |
| SspMI | CTAG | 4 cut(s) | 449, 549, 1097, 1131 |
| StuI | AGGCCT | 1 cut(s) | 1165 |
| StyD4I | CCNGG | 2 cut(s) | 270, 271 |
| TaaI | ACNGT | 4 cut(s) | 285, 510, 873, 1255 |
| TaiI | ACGT | 1 cut(s) | 896 |
| TaqI | TCGA | 7 cut(s) | 137, 393, 864, 1116, 1160, 1168, 1260 |
| TasI | AATT | 6 cut(s) | 319, 405, 526, 568, 884, 1275 |
| TatI | WGTACW | 3 cut(s) | 498, 733, 1053 |
| TfiI | GAWTC | 7 cut(s) | 122, 143, 149, 721, 817, 833, 866 |
| Tru1I | TTAA | 6 cut(s) | 27, 234, 323, 972, 1079, 1359 |
| Tru9I | TTAA | 6 cut(s) | 27, 234, 323, 972, 1079, 1359 |
| TscAI | CASTG | 1 cut(s) | 1348 |
| TseFI | GTSAC | 3 cut(s) | 602, 650, 858 |
| TseI | GCWGC | 2 cut(s) | 350, 698 |
| Tsp45I | GTSAC | 3 cut(s) | 602, 650, 858 |
| TspDTI | ATGAA | 6 cut(s) | 72, 204, 417, 1102, 1229, 1287 |
| TspMI | CCCGGG | 1 cut(s) | 271 |
| TspRI | CASTG | 1 cut(s) | 1348 |
| VspI | ATTAAT | 1 cut(s) | 972 |
| XapI | RAATTY | 2 cut(s) | 405, 568 |
| XceI | RCATGY | 2 cut(s) | 476, 480 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 436 |
| XmaI | CCCGGG | 1 cut(s) | 271 |
| XmnI | GAANNNNTTC | 1 cut(s) | 568 |
| XspI | CTAG | 4 cut(s) | 449, 549, 1097, 1131 |
| Zsp2I | ATGCAT | 2 cut(s) | 478, 1234 |