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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 533 |
| AccII | CGCG | 1 cut(s) | 519 |
| AccIII | TCCGGA | 1 cut(s) | 61 |
| AciI | CCGC | 1 cut(s) | 240 |
| AcoI | YGGCCR | 1 cut(s) | 364 |
| AcsI | RAATTY | 3 cut(s) | 218, 260, 305 |
| AcuI | CTGAAG | 2 cut(s) | 114, 630 |
| AfaI | GTAC | 2 cut(s) | 5, 317 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 185, 490 |
| AgsI | TTSAA | 3 cut(s) | 248, 298, 389 |
| AjnI | CCWGG | 1 cut(s) | 406 |
| AluBI | AGCT | 8 cut(s) | 92, 116, 230, 270, 397, 581, 621, 652 |
| AluI | AGCT | 8 cut(s) | 92, 116, 230, 270, 397, 581, 621, 652 |
| Aor13HI | TCCGGA | 1 cut(s) | 61 |
| AoxI | GGCC | 1 cut(s) | 364 |
| ApeKI | GCWGC | 1 cut(s) | 337 |
| ApoI | RAATTY | 3 cut(s) | 218, 260, 305 |
| AsuHPI | GGTGA | 2 cut(s) | 385, 643 |
| AsuII | TTCGAA | 1 cut(s) | 12 |
| AsuNHI | GCTAGC | 1 cut(s) | 439 |
| BalI | TGGCCA | 1 cut(s) | 366 |
| BbsI | GAAGAC | 1 cut(s) | 618 |
| BbvI | GCAGC | 1 cut(s) | 324 |
| BciT130I | CCWGG | 1 cut(s) | 408 |
| BfaI | CTAG | 2 cut(s) | 440, 588 |
| BisI | GCNGC | 1 cut(s) | 338 |
| BlsI | GCNGC | 1 cut(s) | 339 |
| Bme1390I | CCNGG | 1 cut(s) | 408 |
| BmiI | GGNNCC | 1 cut(s) | 675 |
| BmrFI | CCNGG | 1 cut(s) | 408 |
| BmsI | GCATC | 2 cut(s) | 67, 156 |
| BmtI | GCTAGC | 1 cut(s) | 443 |
| BoxI | GACNNNNGTC | 1 cut(s) | 660 |
| BpiI | GAAGAC | 1 cut(s) | 618 |
| Bpu14I | TTCGAA | 1 cut(s) | 12 |
| BpuEI | CTTGAG | 1 cut(s) | 558 |
| BsaWI | WCCGGW | 1 cut(s) | 61 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 185, 490 |
| Bse1I | ACTGG | 1 cut(s) | 367 |
| Bse3DI | GCAATG | 2 cut(s) | 72, 463 |
| BseAI | TCCGGA | 1 cut(s) | 61 |
| BseBI | CCWGG | 1 cut(s) | 408 |
| BseGI | GGATG | 3 cut(s) | 58, 147, 417 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 185, 490 |
| BseMI | GCAATG | 2 cut(s) | 72, 463 |
| BseMII | CTCAG | 1 cut(s) | 69 |
| BseNI | ACTGG | 1 cut(s) | 367 |
| BseXI | GCAGC | 1 cut(s) | 324 |
| Bsh1236I | CGCG | 1 cut(s) | 519 |
| Bsh1285I | CGRYCG | 1 cut(s) | 533 |
| BshFI | GGCC | 1 cut(s) | 366 |
| BsiEI | CGRYCG | 1 cut(s) | 533 |
| BsiSI | CCGG | 1 cut(s) | 62 |
| BslFI | GGGAC | 2 cut(s) | 449, 605 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 185, 490 |
| BsmFI | GGGAC | 2 cut(s) | 449, 605 |
| BsnI | GGCC | 1 cut(s) | 366 |
| Bsp119I | TTCGAA | 1 cut(s) | 12 |
| Bsp13I | TCCGGA | 1 cut(s) | 61 |
| Bsp143I | GATC | 2 cut(s) | 523, 727 |
| Bsp68I | TCGCGA | 1 cut(s) | 519 |
| BspACI | CCGC | 1 cut(s) | 240 |
| BspANI | GGCC | 1 cut(s) | 366 |
| BspCNI | CTCAG | 1 cut(s) | 70 |
| BspEI | TCCGGA | 1 cut(s) | 61 |
| BspFNI | CGCG | 1 cut(s) | 519 |
| BspLI | GGNNCC | 1 cut(s) | 675 |
| BspOI | GCTAGC | 1 cut(s) | 443 |
| BspT104I | TTCGAA | 1 cut(s) | 12 |
| BsrDI | GCAATG | 2 cut(s) | 72, 463 |
| BsrI | ACTGG | 1 cut(s) | 367 |
| BssMI | GATC | 2 cut(s) | 523, 727 |
| Bst2UI | CCWGG | 1 cut(s) | 408 |
| Bst4CI | ACNGT | 2 cut(s) | 142, 196 |
| Bst6I | CTCTTC | 2 cut(s) | 90, 293 |
| BstBI | TTCGAA | 1 cut(s) | 12 |
| BstC8I | GCNNGC | 4 cut(s) | 228, 242, 399, 441 |
| BstDEI | CTNAG | 3 cut(s) | 78, 112, 510 |
| BstEII | GGTNACC | 1 cut(s) | 479 |
| BstF5I | GGATG | 3 cut(s) | 58, 147, 417 |
| BstFNI | CGCG | 1 cut(s) | 519 |
| BstKTI | GATC | 2 cut(s) | 526, 730 |
| BstMBI | GATC | 2 cut(s) | 523, 727 |
| BstMCI | CGRYCG | 1 cut(s) | 533 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 98 |
| BstNI | CCWGG | 1 cut(s) | 408 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 660 |
| BstPI | GGTNACC | 1 cut(s) | 479 |
| BstSCI | CCNGG | 1 cut(s) | 406 |
| BstUI | CGCG | 1 cut(s) | 519 |
| BstV1I | GCAGC | 1 cut(s) | 324 |
| BstV2I | GAAGAC | 1 cut(s) | 618 |
| BsuRI | GGCC | 1 cut(s) | 366 |
| BtgZI | GCGATG | 1 cut(s) | 534 |
| BtsCI | GGATG | 3 cut(s) | 58, 147, 417 |
| BtsI | GCAGTG | 1 cut(s) | 550 |
| BtsIMutI | CAGTG | 3 cut(s) | 252, 374, 550 |
| BtuMI | TCGCGA | 1 cut(s) | 519 |
| Cac8I | GCNNGC | 4 cut(s) | 228, 242, 399, 441 |
| CsiI | ACCWGGT | 1 cut(s) | 406 |
| Csp6I | GTAC | 2 cut(s) | 4, 316 |
| CviAII | CATG | 3 cut(s) | 286, 355, 616 |
| CviQI | GTAC | 2 cut(s) | 4, 316 |
| DdeI | CTNAG | 3 cut(s) | 78, 112, 510 |
| DpnI | GATC | 2 cut(s) | 525, 729 |
| DpnII | GATC | 2 cut(s) | 523, 727 |
| EaeI | YGGCCR | 1 cut(s) | 364 |
| Eam1104I | CTCTTC | 2 cut(s) | 90, 293 |
| EarI | CTCTTC | 2 cut(s) | 90, 293 |
| Eco57I | CTGAAG | 2 cut(s) | 114, 630 |
| Eco91I | GGTNACC | 1 cut(s) | 479 |
| EcoO65I | GGTNACC | 1 cut(s) | 479 |
| EcoRII | CCWGG | 1 cut(s) | 406 |
| FaeI | CATG | 3 cut(s) | 289, 358, 619 |
| FaqI | GGGAC | 2 cut(s) | 449, 605 |
| FatI | CATG | 3 cut(s) | 285, 354, 615 |
| FauI | CCCGC | 1 cut(s) | 233 |
| FblI | GTMKAC | 1 cut(s) | 533 |
| Fnu4HI | GCNGC | 1 cut(s) | 338 |
| FokI | GGATG | 3 cut(s) | 45, 134, 404 |
| Fsp4HI | GCNGC | 1 cut(s) | 338 |
| FspBI | CTAG | 2 cut(s) | 440, 588 |
| GluI | GCNGC | 1 cut(s) | 338 |
| HaeIII | GGCC | 1 cut(s) | 366 |
| HapII | CCGG | 1 cut(s) | 62 |
| Hin1II | CATG | 3 cut(s) | 289, 358, 619 |
| HincII | GTYRAC | 2 cut(s) | 172, 534 |
| HindII | GTYRAC | 2 cut(s) | 172, 534 |
| HinfI | GANTC | 3 cut(s) | 200, 389, 703 |
| HpaII | CCGG | 1 cut(s) | 62 |
| HphI | GGTGA | 2 cut(s) | 385, 643 |
| Hpy166II | GTNNAC | 3 cut(s) | 172, 534, 738 |
| Hpy188I | TCNGA | 2 cut(s) | 708, 753 |
| Hpy188III | TCNNGA | 3 cut(s) | 62, 466, 518 |
| Hpy8I | GTNNAC | 3 cut(s) | 172, 534, 738 |
| HpyAV | CCTTC | 4 cut(s) | 19, 59, 370, 703 |
| HpyCH4III | ACNGT | 2 cut(s) | 142, 196 |
| HpyCH4V | TGCA | 5 cut(s) | 33, 72, 191, 401, 499 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 98 |
| HpyF3I | CTNAG | 3 cut(s) | 78, 112, 510 |
| Hsp92II | CATG | 3 cut(s) | 289, 358, 619 |
| Kpn2I | TCCGGA | 1 cut(s) | 61 |
| Kzo9I | GATC | 2 cut(s) | 523, 727 |
| LmnI | GCTCC | 3 cut(s) | 289, 649, 802 |
| LpnPI | CCDG | 7 cut(s) | 75, 171, 326, 380, 393, 420, 435 |
| Lsp1109I | GCAGC | 1 cut(s) | 324 |
| LweI | GCATC | 2 cut(s) | 67, 156 |
| MabI | ACCWGGT | 1 cut(s) | 406 |
| MaeI | CTAG | 2 cut(s) | 440, 588 |
| MaeIII | GTNAC | 2 cut(s) | 413, 479 |
| MalI | GATC | 2 cut(s) | 525, 729 |
| MboI | GATC | 2 cut(s) | 523, 727 |
| MboII | GAAGA | 4 cut(s) | 107, 310, 518, 623 |
| MlsI | TGGCCA | 1 cut(s) | 366 |
| MluCI | AATT | 3 cut(s) | 218, 260, 305 |
| MluNI | TGGCCA | 1 cut(s) | 366 |
| MlyI | GAGTC | 1 cut(s) | 209 |
| MnlI | CCTC | 6 cut(s) | 91, 193, 294, 375, 426, 582 |
| Mox20I | TGGCCA | 1 cut(s) | 366 |
| MroI | TCCGGA | 1 cut(s) | 61 |
| MscI | TGGCCA | 1 cut(s) | 366 |
| MseI | TTAA | 3 cut(s) | 684, 747, 814 |
| Msp20I | TGGCCA | 1 cut(s) | 366 |
| MspI | CCGG | 1 cut(s) | 62 |
| MspR9I | CCNGG | 1 cut(s) | 408 |
| MvaI | CCWGG | 1 cut(s) | 408 |
| MvnI | CGCG | 1 cut(s) | 519 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 98 |
| NdeII | GATC | 2 cut(s) | 523, 727 |
| NheI | GCTAGC | 1 cut(s) | 439 |
| NlaIII | CATG | 3 cut(s) | 289, 358, 619 |
| NlaIV | GGNNCC | 1 cut(s) | 675 |
| NmuCI | GTSAC | 1 cut(s) | 413 |
| NruI | TCGCGA | 1 cut(s) | 519 |
| NspV | TTCGAA | 1 cut(s) | 12 |
| PfeI | GAWTC | 2 cut(s) | 389, 703 |
| PkrI | GCNGC | 1 cut(s) | 339 |
| PleI | GAGTC | 1 cut(s) | 208 |
| PpsI | GAGTC | 1 cut(s) | 208 |
| PshAI | GACNNNNGTC | 1 cut(s) | 660 |
| Psp6I | CCWGG | 1 cut(s) | 406 |
| PspEI | GGTNACC | 1 cut(s) | 479 |
| PspGI | CCWGG | 1 cut(s) | 406 |
| PspN4I | GGNNCC | 1 cut(s) | 675 |
| RruI | TCGCGA | 1 cut(s) | 519 |
| RsaI | GTAC | 2 cut(s) | 5, 317 |
| RsaNI | GTAC | 2 cut(s) | 4, 316 |
| SalI | GTCGAC | 1 cut(s) | 532 |
| SaqAI | TTAA | 3 cut(s) | 684, 747, 814 |
| SatI | GCNGC | 1 cut(s) | 338 |
| Sau3AI | GATC | 2 cut(s) | 523, 727 |
| SchI | GAGTC | 1 cut(s) | 209 |
| ScrFI | CCNGG | 1 cut(s) | 408 |
| SexAI | ACCWGGT | 1 cut(s) | 406 |
| SfaNI | GCATC | 2 cut(s) | 67, 156 |
| SfuI | TTCGAA | 1 cut(s) | 12 |
| SmlI | CTYRAG | 1 cut(s) | 573 |
| SmoI | CTYRAG | 1 cut(s) | 573 |
| Sse9I | AATT | 3 cut(s) | 218, 260, 305 |
| SsiI | CCGC | 1 cut(s) | 240 |
| SspI | AATATT | 1 cut(s) | 810 |
| SspMI | CTAG | 2 cut(s) | 440, 588 |
| StyD4I | CCNGG | 1 cut(s) | 406 |
| TaaI | ACNGT | 2 cut(s) | 142, 196 |
| TaqI | TCGA | 3 cut(s) | 12, 533, 639 |
| TaqII | GACCGA | 1 cut(s) | 519 |
| TasI | AATT | 3 cut(s) | 218, 260, 305 |
| TatI | WGTACW | 1 cut(s) | 315 |
| TfiI | GAWTC | 2 cut(s) | 389, 703 |
| Tru1I | TTAA | 3 cut(s) | 684, 747, 814 |
| Tru9I | TTAA | 3 cut(s) | 684, 747, 814 |
| TscAI | CASTG | 3 cut(s) | 259, 374, 550 |
| TseFI | GTSAC | 1 cut(s) | 413 |
| TseI | GCWGC | 1 cut(s) | 337 |
| Tsp45I | GTSAC | 1 cut(s) | 413 |
| TspDTI | ATGAA | 4 cut(s) | 38, 273, 462, 474 |
| TspRI | CASTG | 3 cut(s) | 259, 374, 550 |
| XapI | RAATTY | 3 cut(s) | 218, 260, 305 |
| XmiI | GTMKAC | 1 cut(s) | 533 |
| XspI | CTAG | 2 cut(s) | 440, 588 |