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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 413 |
| Acc36I | ACCTGC | 1 cut(s) | 413 |
| AccII | CGCG | 1 cut(s) | 91 |
| AciI | CCGC | 1 cut(s) | 91 |
| AclI | AACGTT | 1 cut(s) | 520 |
| AcoI | YGGCCR | 1 cut(s) | 557 |
| AcsI | RAATTY | 1 cut(s) | 444 |
| AcuI | CTGAAG | 1 cut(s) | 287 |
| AfaI | GTAC | 2 cut(s) | 40, 609 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 80, 762 |
| AflIII | ACRYGT | 1 cut(s) | 178 |
| AgsI | TTSAA | 4 cut(s) | 109, 451, 851, 860 |
| AjnI | CCWGG | 1 cut(s) | 679 |
| AluBI | AGCT | 6 cut(s) | 14, 149, 212, 440, 454, 505 |
| AluI | AGCT | 6 cut(s) | 14, 149, 212, 440, 454, 505 |
| Alw26I | GTCTC | 4 cut(s) | 64, 471, 479, 535 |
| Ama87I | CYCGRG | 3 cut(s) | 76, 97, 762 |
| AoxI | GGCC | 5 cut(s) | 6, 492, 557, 624, 677 |
| ApeKI | GCWGC | 3 cut(s) | 143, 146, 785 |
| ApoI | RAATTY | 1 cut(s) | 444 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 112, 144 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 652, 864 |
| AspLEI | GCGC | 1 cut(s) | 91 |
| AspS9I | GGNCC | 3 cut(s) | 493, 625, 677 |
| AsuHPI | GGTGA | 5 cut(s) | 31, 73, 143, 207, 749 |
| AsuII | TTCGAA | 1 cut(s) | 726 |
| AvaI | CYCGRG | 3 cut(s) | 76, 97, 762 |
| BanII | GRGCYC | 1 cut(s) | 338 |
| BbsI | GAAGAC | 1 cut(s) | 275 |
| BbvI | GCAGC | 3 cut(s) | 155, 158, 797 |
| BccI | CCATC | 1 cut(s) | 325 |
| BciT130I | CCWGG | 1 cut(s) | 681 |
| BciVI | GTATCC | 1 cut(s) | 820 |
| BcoDI | GTCTC | 4 cut(s) | 64, 471, 479, 535 |
| BfaI | CTAG | 1 cut(s) | 717 |
| BfmI | CTRYAG | 1 cut(s) | 435 |
| BfuAI | ACCTGC | 1 cut(s) | 413 |
| BfuI | GTATCC | 1 cut(s) | 820 |
| BisI | GCNGC | 3 cut(s) | 144, 147, 786 |
| BlsI | GCNGC | 3 cut(s) | 145, 148, 787 |
| Bme1390I | CCNGG | 1 cut(s) | 681 |
| BmeT110I | CYCGRG | 3 cut(s) | 76, 97, 762 |
| BmgT120I | GGNCC | 3 cut(s) | 493, 625, 677 |
| BmiI | GGNNCC | 1 cut(s) | 678 |
| BmrFI | CCNGG | 1 cut(s) | 681 |
| BmsI | GCATC | 6 cut(s) | 181, 391, 504, 676, 679, 730 |
| BpiI | GAAGAC | 1 cut(s) | 275 |
| BpmI | CTGGAG | 1 cut(s) | 890 |
| Bpu14I | TTCGAA | 1 cut(s) | 726 |
| BpuEI | CTTGAG | 1 cut(s) | 860 |
| BsaI | GGTCTC | 1 cut(s) | 64 |
| BsaJI | CCNNGG | 2 cut(s) | 612, 621 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 534, 564 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 80, 762 |
| Bse118I | RCCGGY | 1 cut(s) | 559 |
| Bse1I | ACTGG | 5 cut(s) | 206, 218, 541, 572, 655 |
| BseBI | CCWGG | 1 cut(s) | 681 |
| BseDI | CCNNGG | 2 cut(s) | 612, 621 |
| BseGI | GGATG | 2 cut(s) | 610, 811 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 80, 762 |
| BseMII | CTCAG | 1 cut(s) | 480 |
| BseNI | ACTGG | 5 cut(s) | 206, 218, 541, 572, 655 |
| BseRI | GAGGAG | 3 cut(s) | 82, 115, 128 |
| BseX3I | CGGCCG | 1 cut(s) | 557 |
| BseXI | GCAGC | 3 cut(s) | 155, 158, 797 |
| BsgI | GTGCAG | 1 cut(s) | 567 |
| Bsh1236I | CGCG | 1 cut(s) | 91 |
| Bsh1285I | CGRYCG | 1 cut(s) | 560 |
| BshFI | GGCC | 5 cut(s) | 8, 494, 559, 626, 679 |
| BsiEI | CGRYCG | 1 cut(s) | 560 |
| BsiHKCI | CYCGRG | 3 cut(s) | 76, 97, 762 |
| BsiSI | CCGG | 1 cut(s) | 560 |
| BslFI | GGGAC | 2 cut(s) | 262, 318 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 80, 762 |
| BsmAI | GTCTC | 4 cut(s) | 64, 471, 479, 535 |
| BsmFI | GGGAC | 2 cut(s) | 262, 318 |
| BsmI | GAATGC | 2 cut(s) | 404, 866 |
| BsnI | GGCC | 5 cut(s) | 8, 494, 559, 626, 679 |
| Bso31I | GGTCTC | 1 cut(s) | 64 |
| BsoBI | CYCGRG | 3 cut(s) | 76, 97, 762 |
| Bsp119I | TTCGAA | 1 cut(s) | 726 |
| Bsp1286I | GDGCHC | 1 cut(s) | 338 |
| Bsp1407I | TGTACA | 1 cut(s) | 38 |
| BspACI | CCGC | 1 cut(s) | 91 |
| BspANI | GGCC | 5 cut(s) | 8, 494, 559, 626, 679 |
| BspCNI | CTCAG | 1 cut(s) | 481 |
| BspFNI | CGCG | 1 cut(s) | 91 |
| BspLI | GGNNCC | 1 cut(s) | 678 |
| BspMI | ACCTGC | 1 cut(s) | 413 |
| BspT104I | TTCGAA | 1 cut(s) | 726 |
| BspTNI | GGTCTC | 1 cut(s) | 64 |
| BsrFI | RCCGGY | 1 cut(s) | 559 |
| BsrGI | TGTACA | 1 cut(s) | 38 |
| BsrI | ACTGG | 5 cut(s) | 206, 218, 541, 572, 655 |
| BssAI | RCCGGY | 1 cut(s) | 559 |
| BssECI | CCNNGG | 2 cut(s) | 612, 621 |
| BssT1I | CCWWGG | 2 cut(s) | 612, 621 |
| Bst2UI | CCWGG | 1 cut(s) | 681 |
| Bst4CI | ACNGT | 2 cut(s) | 352, 436 |
| Bst6I | CTCTTC | 3 cut(s) | 59, 723, 870 |
| BstAUI | TGTACA | 1 cut(s) | 38 |
| BstBI | TTCGAA | 1 cut(s) | 726 |
| BstDEI | CTNAG | 2 cut(s) | 273, 489 |
| BstF5I | GGATG | 2 cut(s) | 610, 811 |
| BstFNI | CGCG | 1 cut(s) | 91 |
| BstHHI | GCGC | 1 cut(s) | 91 |
| BstMAI | GTCTC | 4 cut(s) | 64, 471, 479, 535 |
| BstMCI | CGRYCG | 1 cut(s) | 560 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 676, 842 |
| BstNI | CCWGG | 1 cut(s) | 681 |
| BstNSI | RCATGY | 1 cut(s) | 182 |
| BstSCI | CCNGG | 1 cut(s) | 679 |
| BstSFI | CTRYAG | 1 cut(s) | 435 |
| BstUI | CGCG | 1 cut(s) | 91 |
| BstV1I | GCAGC | 3 cut(s) | 155, 158, 797 |
| BstV2I | GAAGAC | 1 cut(s) | 275 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 16 |
| BstZI | CGGCCG | 1 cut(s) | 557 |
| BsuI | GTATCC | 1 cut(s) | 820 |
| BsuRI | GGCC | 5 cut(s) | 8, 494, 559, 626, 679 |
| BtsCI | GGATG | 2 cut(s) | 610, 811 |
| BtsIMutI | CAGTG | 2 cut(s) | 199, 225 |
| BveI | ACCTGC | 1 cut(s) | 413 |
| CfoI | GCGC | 1 cut(s) | 91 |
| Cfr10I | RCCGGY | 1 cut(s) | 559 |
| Cfr13I | GGNCC | 3 cut(s) | 493, 625, 677 |
| CseI | GACGC | 2 cut(s) | 315, 698 |
| Csp6I | GTAC | 2 cut(s) | 39, 608 |
| CviAII | CATG | 5 cut(s) | 42, 131, 179, 239, 416 |
| CviQI | GTAC | 2 cut(s) | 39, 608 |
| DdeI | CTNAG | 2 cut(s) | 273, 489 |
| EaeI | YGGCCR | 1 cut(s) | 557 |
| EagI | CGGCCG | 1 cut(s) | 557 |
| Eam1104I | CTCTTC | 3 cut(s) | 59, 723, 870 |
| EarI | CTCTTC | 3 cut(s) | 59, 723, 870 |
| EclXI | CGGCCG | 1 cut(s) | 557 |
| Eco130I | CCWWGG | 2 cut(s) | 612, 621 |
| Eco24I | GRGCYC | 1 cut(s) | 338 |
| Eco31I | GGTCTC | 1 cut(s) | 64 |
| Eco52I | CGGCCG | 1 cut(s) | 557 |
| Eco57I | CTGAAG | 1 cut(s) | 287 |
| Eco88I | CYCGRG | 3 cut(s) | 76, 97, 762 |
| EcoO109I | RGGNCCY | 1 cut(s) | 493 |
| EcoRII | CCWGG | 1 cut(s) | 679 |
| EcoT14I | CCWWGG | 2 cut(s) | 612, 621 |
| EcoT22I | ATGCAT | 3 cut(s) | 406, 691, 745 |
| EcoT38I | GRGCYC | 1 cut(s) | 338 |
| ErhI | CCWWGG | 2 cut(s) | 612, 621 |
| FaeI | CATG | 5 cut(s) | 45, 134, 182, 242, 419 |
| FaqI | GGGAC | 2 cut(s) | 262, 318 |
| FatI | CATG | 5 cut(s) | 41, 130, 178, 238, 415 |
| FauNDI | CATATG | 1 cut(s) | 745 |
| Fnu4HI | GCNGC | 3 cut(s) | 144, 147, 786 |
| FokI | GGATG | 2 cut(s) | 617, 818 |
| FriOI | GRGCYC | 1 cut(s) | 338 |
| Fsp4HI | GCNGC | 3 cut(s) | 144, 147, 786 |
| FspBI | CTAG | 1 cut(s) | 717 |
| GlaI | GCGC | 1 cut(s) | 90 |
| GluI | GCNGC | 3 cut(s) | 144, 147, 786 |
| GsuI | CTGGAG | 1 cut(s) | 890 |
| HaeIII | GGCC | 5 cut(s) | 8, 494, 559, 626, 679 |
| HapII | CCGG | 1 cut(s) | 560 |
| HgaI | GACGC | 2 cut(s) | 315, 698 |
| HhaI | GCGC | 1 cut(s) | 91 |
| Hin1II | CATG | 5 cut(s) | 45, 134, 182, 242, 419 |
| Hin6I | GCGC | 1 cut(s) | 89 |
| HinP1I | GCGC | 1 cut(s) | 89 |
| HincII | GTYRAC | 1 cut(s) | 565 |
| HindII | GTYRAC | 1 cut(s) | 565 |
| HinfI | GANTC | 5 cut(s) | 50, 166, 205, 224, 254 |
| HpaII | CCGG | 1 cut(s) | 560 |
| HphI | GGTGA | 5 cut(s) | 31, 73, 143, 207, 749 |
| Hpy166II | GTNNAC | 1 cut(s) | 565 |
| Hpy188I | TCNGA | 2 cut(s) | 55, 267 |
| Hpy188III | TCNNGA | 4 cut(s) | 97, 228, 839, 869 |
| Hpy8I | GTNNAC | 1 cut(s) | 565 |
| HpyAV | CCTTC | 4 cut(s) | 16, 52, 103, 577 |
| HpyCH4III | ACNGT | 2 cut(s) | 352, 436 |
| HpyCH4IV | ACGT | 2 cut(s) | 127, 520 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 676, 842 |
| HpyF3I | CTNAG | 2 cut(s) | 273, 489 |
| HpySE526I | ACGT | 2 cut(s) | 127, 520 |
| Hsp92II | CATG | 5 cut(s) | 45, 134, 182, 242, 419 |
| HspAI | GCGC | 1 cut(s) | 89 |
| LmnI | GCTCC | 2 cut(s) | 115, 412 |
| Lsp1109I | GCAGC | 3 cut(s) | 155, 158, 797 |
| LweI | GCATC | 6 cut(s) | 181, 391, 504, 676, 679, 730 |
| MaeI | CTAG | 1 cut(s) | 717 |
| MaeII | ACGT | 2 cut(s) | 127, 520 |
| MboII | GAAGA | 4 cut(s) | 76, 280, 740, 887 |
| MhlI | GDGCHC | 1 cut(s) | 338 |
| MluCI | AATT | 4 cut(s) | 379, 444, 633, 855 |
| MmeI | TCCRAC | 1 cut(s) | 582 |
| Mph1103I | ATGCAT | 3 cut(s) | 406, 691, 745 |
| MroXI | GAANNNNTTC | 2 cut(s) | 652, 864 |
| MseI | TTAA | 2 cut(s) | 299, 378 |
| MslI | CAYNNNNRTG | 2 cut(s) | 177, 249 |
| MspI | CCGG | 1 cut(s) | 560 |
| MspR9I | CCNGG | 1 cut(s) | 681 |
| Mva1269I | GAATGC | 2 cut(s) | 404, 866 |
| MvaI | CCWGG | 1 cut(s) | 681 |
| MvnI | CGCG | 1 cut(s) | 91 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 676, 842 |
| NdeI | CATATG | 1 cut(s) | 745 |
| NlaIII | CATG | 5 cut(s) | 45, 134, 182, 242, 419 |
| NlaIV | GGNNCC | 1 cut(s) | 678 |
| NmeAIII | GCCGAG | 1 cut(s) | 65 |
| NsiI | ATGCAT | 3 cut(s) | 406, 691, 745 |
| NspI | RCATGY | 1 cut(s) | 182 |
| NspV | TTCGAA | 1 cut(s) | 726 |
| PaeR7I | CTCGAG | 1 cut(s) | 97 |
| PaqCI | CACCTGC | 1 cut(s) | 413 |
| PciI | ACATGT | 1 cut(s) | 178 |
| PctI | GAATGC | 2 cut(s) | 404, 866 |
| PdmI | GAANNNNTTC | 2 cut(s) | 652, 864 |
| PfeI | GAWTC | 5 cut(s) | 50, 166, 205, 224, 254 |
| PflFI | GACNNNGTC | 1 cut(s) | 274 |
| PkrI | GCNGC | 3 cut(s) | 145, 148, 787 |
| PscI | ACATGT | 1 cut(s) | 178 |
| Psp1406I | AACGTT | 1 cut(s) | 520 |
| Psp6I | CCWGG | 1 cut(s) | 679 |
| PspGI | CCWGG | 1 cut(s) | 679 |
| PspN4I | GGNNCC | 1 cut(s) | 678 |
| PspPI | GGNCC | 3 cut(s) | 493, 625, 677 |
| PsyI | GACNNNGTC | 1 cut(s) | 274 |
| RsaI | GTAC | 2 cut(s) | 40, 609 |
| RsaNI | GTAC | 2 cut(s) | 39, 608 |
| RseI | CAYNNNNRTG | 2 cut(s) | 177, 249 |
| SaqAI | TTAA | 2 cut(s) | 299, 378 |
| SatI | GCNGC | 3 cut(s) | 144, 147, 786 |
| Sau96I | GGNCC | 3 cut(s) | 493, 625, 677 |
| ScrFI | CCNGG | 1 cut(s) | 681 |
| SduI | GDGCHC | 1 cut(s) | 338 |
| SfaNI | GCATC | 6 cut(s) | 181, 391, 504, 676, 679, 730 |
| SfcI | CTRYAG | 1 cut(s) | 435 |
| Sfr274I | CTCGAG | 1 cut(s) | 97 |
| SfuI | TTCGAA | 1 cut(s) | 726 |
| SlaI | CTCGAG | 1 cut(s) | 97 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 177, 249 |
| SmlI | CTYRAG | 2 cut(s) | 97, 839 |
| SmoI | CTYRAG | 2 cut(s) | 97, 839 |
| Sse9I | AATT | 4 cut(s) | 379, 444, 633, 855 |
| SsiI | CCGC | 1 cut(s) | 91 |
| SspI | AATATT | 1 cut(s) | 781 |
| SspMI | CTAG | 1 cut(s) | 717 |
| StyD4I | CCNGG | 1 cut(s) | 679 |
| StyI | CCWWGG | 2 cut(s) | 612, 621 |
| TaaI | ACNGT | 2 cut(s) | 352, 436 |
| TaiI | ACGT | 2 cut(s) | 130, 523 |
| TaqI | TCGA | 4 cut(s) | 98, 164, 175, 726 |
| TasI | AATT | 4 cut(s) | 379, 444, 633, 855 |
| TatI | WGTACW | 1 cut(s) | 38 |
| TfiI | GAWTC | 5 cut(s) | 50, 166, 205, 224, 254 |
| Tru1I | TTAA | 2 cut(s) | 299, 378 |
| Tru9I | TTAA | 2 cut(s) | 299, 378 |
| TscAI | CASTG | 2 cut(s) | 206, 225 |
| TseI | GCWGC | 3 cut(s) | 143, 146, 785 |
| TspDTI | ATGAA | 3 cut(s) | 227, 267, 375 |
| TspRI | CASTG | 2 cut(s) | 206, 225 |
| Tth111I | GACNNNGTC | 1 cut(s) | 274 |
| XapI | RAATTY | 1 cut(s) | 444 |
| XceI | RCATGY | 1 cut(s) | 182 |
| XhoI | CTCGAG | 1 cut(s) | 97 |
| XmnI | GAANNNNTTC | 2 cut(s) | 652, 864 |
| XspI | CTAG | 1 cut(s) | 717 |
| Zsp2I | ATGCAT | 3 cut(s) | 406, 691, 745 |