TdcA1-ORF2 protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4216 | PF13952 | 20 - 91 | 3.1e-17 | Domain of unknown function (DUF4216) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 441 |
| AciI | CCGC | 1 cut(s) | 439 |
| AclWI | GGATC | 1 cut(s) | 236 |
| AfaI | GTAC | 3 cut(s) | 13, 136, 446 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 251, 397 |
| AgsI | TTSAA | 2 cut(s) | 97, 359 |
| AluBI | AGCT | 2 cut(s) | 26, 180 |
| AluI | AGCT | 2 cut(s) | 26, 180 |
| Alw26I | GTCTC | 2 cut(s) | 395, 576 |
| AlwI | GGATC | 1 cut(s) | 236 |
| BbsI | GAAGAC | 3 cut(s) | 24, 537, 582 |
| BccI | CCATC | 3 cut(s) | 99, 136, 313 |
| BcoDI | GTCTC | 2 cut(s) | 395, 576 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 215 |
| BmsI | GCATC | 1 cut(s) | 420 |
| BpiI | GAAGAC | 3 cut(s) | 24, 537, 582 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 518, 550 |
| BpuEI | CTTGAG | 1 cut(s) | 335 |
| BsaJI | CCNNGG | 1 cut(s) | 128 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 251, 397 |
| Bse1I | ACTGG | 2 cut(s) | 79, 83 |
| BseDI | CCNNGG | 1 cut(s) | 128 |
| BseGI | GGATG | 3 cut(s) | 423, 492, 571 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 251, 397 |
| BseMII | CTCAG | 2 cut(s) | 495, 549 |
| BseNI | ACTGG | 2 cut(s) | 79, 83 |
| BseRI | GAGGAG | 1 cut(s) | 145 |
| Bsh1236I | CGCG | 1 cut(s) | 441 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 251, 397 |
| BsmAI | GTCTC | 2 cut(s) | 395, 576 |
| Bsp143I | GATC | 2 cut(s) | 241, 541 |
| BspACI | CCGC | 1 cut(s) | 439 |
| BspCNI | CTCAG | 2 cut(s) | 496, 548 |
| BspFNI | CGCG | 1 cut(s) | 441 |
| BspPI | GGATC | 1 cut(s) | 236 |
| BsrI | ACTGG | 2 cut(s) | 79, 83 |
| BssECI | CCNNGG | 1 cut(s) | 128 |
| BssMI | GATC | 2 cut(s) | 241, 541 |
| Bst4CI | ACNGT | 1 cut(s) | 198 |
| BstDEI | CTNAG | 2 cut(s) | 504, 535 |
| BstF5I | GGATG | 3 cut(s) | 423, 492, 571 |
| BstFNI | CGCG | 1 cut(s) | 441 |
| BstKTI | GATC | 2 cut(s) | 244, 544 |
| BstMAI | GTCTC | 2 cut(s) | 395, 576 |
| BstMBI | GATC | 2 cut(s) | 241, 541 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 215 |
| BstNSI | RCATGY | 1 cut(s) | 174 |
| BstUI | CGCG | 1 cut(s) | 441 |
| BstV2I | GAAGAC | 3 cut(s) | 24, 537, 582 |
| BtsCI | GGATG | 3 cut(s) | 423, 492, 571 |
| BtsI | GCAGTG | 1 cut(s) | 300 |
| BtsIMutI | CAGTG | 2 cut(s) | 168, 300 |
| Csp6I | GTAC | 3 cut(s) | 12, 135, 445 |
| CviAII | CATG | 1 cut(s) | 171 |
| CviJI | RGCY | 3 cut(s) | 26, 180, 374 |
| CviKI_1 | RGCY | 3 cut(s) | 26, 180, 374 |
| CviQI | GTAC | 3 cut(s) | 12, 135, 445 |
| DdeI | CTNAG | 2 cut(s) | 504, 535 |
| DpnI | GATC | 2 cut(s) | 243, 543 |
| DpnII | GATC | 2 cut(s) | 241, 541 |
| FaeI | CATG | 1 cut(s) | 174 |
| FatI | CATG | 1 cut(s) | 170 |
| FauI | CCCGC | 1 cut(s) | 446 |
| FokI | GGATG | 3 cut(s) | 410, 479, 578 |
| Hin1II | CATG | 1 cut(s) | 174 |
| HincII | GTYRAC | 1 cut(s) | 274 |
| HindII | GTYRAC | 1 cut(s) | 274 |
| HinfI | GANTC | 3 cut(s) | 190, 352, 533 |
| HpaI | GTTAAC | 1 cut(s) | 274 |
| Hpy166II | GTNNAC | 2 cut(s) | 274, 482 |
| Hpy188I | TCNGA | 1 cut(s) | 538 |
| Hpy188III | TCNNGA | 3 cut(s) | 236, 356, 368 |
| Hpy8I | GTNNAC | 2 cut(s) | 274, 482 |
| Hpy99I | CGWCG | 2 cut(s) | 524, 527 |
| HpyCH4III | ACNGT | 1 cut(s) | 198 |
| HpyCH4IV | ACGT | 4 cut(s) | 276, 380, 447, 588 |
| HpyCH4V | TGCA | 3 cut(s) | 174, 305, 329 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 215 |
| HpyF3I | CTNAG | 2 cut(s) | 504, 535 |
| HpySE526I | ACGT | 4 cut(s) | 276, 380, 447, 588 |
| Hsp92II | CATG | 1 cut(s) | 174 |
| KspAI | GTTAAC | 1 cut(s) | 274 |
| Kzo9I | GATC | 2 cut(s) | 241, 541 |
| LmnI | GCTCC | 1 cut(s) | 23 |
| LpnPI | CCDG | 3 cut(s) | 60, 96, 166 |
| LweI | GCATC | 1 cut(s) | 420 |
| MaeII | ACGT | 4 cut(s) | 276, 380, 447, 588 |
| MaeIII | GTNAC | 2 cut(s) | 282, 349 |
| MalI | GATC | 2 cut(s) | 243, 543 |
| MboI | GATC | 2 cut(s) | 241, 541 |
| MboII | GAAGA | 3 cut(s) | 29, 542, 587 |
| MluCI | AATT | 2 cut(s) | 267, 460 |
| MlyI | GAGTC | 2 cut(s) | 346, 527 |
| MmeI | TCCRAC | 2 cut(s) | 242, 457 |
| MnlI | CCTC | 7 cut(s) | 123, 244, 284, 385, 499, 520, 556 |
| MseI | TTAA | 2 cut(s) | 111, 273 |
| MslI | CAYNNNNRTG | 1 cut(s) | 549 |
| MvnI | CGCG | 1 cut(s) | 441 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 215 |
| NdeII | GATC | 2 cut(s) | 241, 541 |
| NlaIII | CATG | 1 cut(s) | 174 |
| NmuCI | GTSAC | 2 cut(s) | 282, 349 |
| NspI | RCATGY | 1 cut(s) | 174 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 594 |
| PfeI | GAWTC | 1 cut(s) | 190 |
| PleI | GAGTC | 2 cut(s) | 346, 527 |
| PpsI | GAGTC | 2 cut(s) | 346, 527 |
| RsaI | GTAC | 3 cut(s) | 13, 136, 446 |
| RsaNI | GTAC | 3 cut(s) | 12, 135, 445 |
| RseI | CAYNNNNRTG | 1 cut(s) | 549 |
| SaqAI | TTAA | 2 cut(s) | 111, 273 |
| Sau3AI | GATC | 2 cut(s) | 241, 541 |
| SchI | GAGTC | 2 cut(s) | 346, 527 |
| SetI | ASST | 7 cut(s) | 28, 182, 279, 295, 383, 450, 591 |
| SfaNI | GCATC | 1 cut(s) | 420 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 549 |
| SmlI | CTYRAG | 1 cut(s) | 314 |
| SmoI | CTYRAG | 1 cut(s) | 314 |
| Sse9I | AATT | 2 cut(s) | 267, 460 |
| SsiI | CCGC | 1 cut(s) | 439 |
| SspI | AATATT | 1 cut(s) | 32 |
| TaaI | ACNGT | 1 cut(s) | 198 |
| TaiI | ACGT | 4 cut(s) | 279, 383, 450, 591 |
| TaqI | TCGA | 1 cut(s) | 57 |
| TasI | AATT | 2 cut(s) | 267, 460 |
| TfiI | GAWTC | 1 cut(s) | 190 |
| Tru1I | TTAA | 2 cut(s) | 111, 273 |
| Tru9I | TTAA | 2 cut(s) | 111, 273 |
| TscAI | CASTG | 2 cut(s) | 168, 307 |
| TseFI | GTSAC | 2 cut(s) | 282, 349 |
| Tsp45I | GTSAC | 2 cut(s) | 282, 349 |
| TspDTI | ATGAA | 3 cut(s) | 481, 502, 567 |
| TspGWI | ACGGA | 2 cut(s) | 36, 413 |
| TspRI | CASTG | 2 cut(s) | 168, 307 |
| XceI | RCATGY | 1 cut(s) | 174 |