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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 382, 392 |
| AcsI | RAATTY | 1 cut(s) | 129 |
| AfaI | GTAC | 1 cut(s) | 66 |
| AfeI | AGCGCT | 1 cut(s) | 299 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 39, 200, 381 |
| AgsI | TTSAA | 2 cut(s) | 295, 307 |
| AluBI | AGCT | 1 cut(s) | 220 |
| AluI | AGCT | 1 cut(s) | 220 |
| Alw26I | GTCTC | 1 cut(s) | 213 |
| Aor51HI | AGCGCT | 1 cut(s) | 299 |
| ApeKI | GCWGC | 1 cut(s) | 115 |
| ApoI | RAATTY | 1 cut(s) | 129 |
| AspLEI | GCGC | 2 cut(s) | 300, 374 |
| BbsI | GAAGAC | 1 cut(s) | 101 |
| BbvI | GCAGC | 1 cut(s) | 102 |
| BccI | CCATC | 2 cut(s) | 356, 383 |
| BcoDI | GTCTC | 1 cut(s) | 213 |
| BfaI | CTAG | 1 cut(s) | 288 |
| BfoI | RGCGCY | 1 cut(s) | 301 |
| BisI | GCNGC | 1 cut(s) | 116 |
| BlsI | GCNGC | 1 cut(s) | 117 |
| BpiI | GAAGAC | 1 cut(s) | 101 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 39, 200, 381 |
| BseGI | GGATG | 2 cut(s) | 367, 375 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 39, 200, 381 |
| BseMII | CTCAG | 2 cut(s) | 12, 115 |
| BseXI | GCAGC | 1 cut(s) | 102 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 39, 200, 381 |
| BsmAI | GTCTC | 1 cut(s) | 213 |
| Bsp143I | GATC | 1 cut(s) | 183 |
| BspACI | CCGC | 2 cut(s) | 382, 392 |
| BspCNI | CTCAG | 2 cut(s) | 13, 114 |
| BssMI | GATC | 1 cut(s) | 183 |
| Bst4CI | ACNGT | 2 cut(s) | 37, 238 |
| BstDEI | CTNAG | 5 cut(s) | 2, 21, 101, 195, 357 |
| BstF5I | GGATG | 2 cut(s) | 367, 375 |
| BstH2I | RGCGCY | 1 cut(s) | 301 |
| BstHHI | GCGC | 2 cut(s) | 300, 374 |
| BstKTI | GATC | 1 cut(s) | 186 |
| BstMAI | GTCTC | 1 cut(s) | 213 |
| BstMBI | GATC | 1 cut(s) | 183 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 320, 337 |
| BstV1I | GCAGC | 1 cut(s) | 102 |
| BstV2I | GAAGAC | 1 cut(s) | 101 |
| BtsCI | GGATG | 2 cut(s) | 367, 375 |
| BtsI | GCAGTG | 1 cut(s) | 318 |
| BtsIMutI | CAGTG | 2 cut(s) | 33, 318 |
| CfoI | GCGC | 2 cut(s) | 300, 374 |
| Csp6I | GTAC | 1 cut(s) | 65 |
| CviAII | CATG | 3 cut(s) | 134, 341, 395 |
| CviJI | RGCY | 2 cut(s) | 115, 220 |
| CviKI_1 | RGCY | 2 cut(s) | 115, 220 |
| CviQI | GTAC | 1 cut(s) | 65 |
| DdeI | CTNAG | 5 cut(s) | 2, 21, 101, 195, 357 |
| DpnI | GATC | 1 cut(s) | 185 |
| DpnII | GATC | 1 cut(s) | 183 |
| Eco47III | AGCGCT | 1 cut(s) | 299 |
| FaeI | CATG | 3 cut(s) | 137, 344, 398 |
| FaiI | YATR | 9 cut(s) | 82, 84, 123, 135, 155, 162, 281, 342, 396 |
| FatI | CATG | 3 cut(s) | 133, 340, 394 |
| FauI | CCCGC | 1 cut(s) | 399 |
| Fnu4HI | GCNGC | 1 cut(s) | 116 |
| FokI | GGATG | 2 cut(s) | 362, 374 |
| Fsp4HI | GCNGC | 1 cut(s) | 116 |
| FspBI | CTAG | 1 cut(s) | 288 |
| GlaI | GCGC | 2 cut(s) | 299, 373 |
| GluI | GCNGC | 1 cut(s) | 116 |
| HaeII | RGCGCY | 1 cut(s) | 301 |
| HhaI | GCGC | 2 cut(s) | 300, 374 |
| Hin1II | CATG | 3 cut(s) | 137, 344, 398 |
| Hin6I | GCGC | 2 cut(s) | 298, 372 |
| HinP1I | GCGC | 2 cut(s) | 298, 372 |
| HinfI | GANTC | 3 cut(s) | 97, 291, 385 |
| Hpy188I | TCNGA | 2 cut(s) | 22, 178 |
| HpyAV | CCTTC | 1 cut(s) | 220 |
| HpyCH4III | ACNGT | 2 cut(s) | 37, 238 |
| HpyCH4V | TGCA | 2 cut(s) | 118, 153 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 320, 337 |
| HpyF3I | CTNAG | 5 cut(s) | 2, 21, 101, 195, 357 |
| Hsp92II | CATG | 3 cut(s) | 137, 344, 398 |
| HspAI | GCGC | 2 cut(s) | 298, 372 |
| Kzo9I | GATC | 1 cut(s) | 183 |
| LpnPI | CCDG | 2 cut(s) | 267, 392 |
| Lsp1109I | GCAGC | 1 cut(s) | 102 |
| MaeI | CTAG | 1 cut(s) | 288 |
| MaeIII | GTNAC | 1 cut(s) | 24 |
| MalI | GATC | 1 cut(s) | 185 |
| MboI | GATC | 1 cut(s) | 183 |
| MboII | GAAGA | 2 cut(s) | 106, 271 |
| MluCI | AATT | 3 cut(s) | 106, 129, 282 |
| MlyI | GAGTC | 1 cut(s) | 91 |
| MmeI | TCCRAC | 1 cut(s) | 194 |
| MnlI | CCTC | 3 cut(s) | 79, 81, 337 |
| MspA1I | CMGCKG | 1 cut(s) | 382 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 320, 337 |
| NdeII | GATC | 1 cut(s) | 183 |
| NlaIII | CATG | 3 cut(s) | 137, 344, 398 |
| PfeI | GAWTC | 2 cut(s) | 291, 385 |
| PkrI | GCNGC | 1 cut(s) | 117 |
| PleI | GAGTC | 1 cut(s) | 91 |
| PpsI | GAGTC | 1 cut(s) | 91 |
| RsaI | GTAC | 1 cut(s) | 66 |
| RsaNI | GTAC | 1 cut(s) | 65 |
| SatI | GCNGC | 1 cut(s) | 116 |
| Sau3AI | GATC | 1 cut(s) | 183 |
| SchI | GAGTC | 1 cut(s) | 91 |
| SetI | ASST | 1 cut(s) | 222 |
| Sse9I | AATT | 3 cut(s) | 106, 129, 282 |
| SsiI | CCGC | 2 cut(s) | 382, 392 |
| SspMI | CTAG | 1 cut(s) | 288 |
| TaaI | ACNGT | 2 cut(s) | 37, 238 |
| TasI | AATT | 3 cut(s) | 106, 129, 282 |
| TatI | WGTACW | 1 cut(s) | 64 |
| TfiI | GAWTC | 2 cut(s) | 291, 385 |
| TscAI | CASTG | 2 cut(s) | 40, 325 |
| TseI | GCWGC | 1 cut(s) | 115 |
| TspDTI | ATGAA | 1 cut(s) | 122 |
| TspRI | CASTG | 2 cut(s) | 40, 325 |
| XapI | RAATTY | 1 cut(s) | 129 |
| XspI | CTAG | 1 cut(s) | 288 |