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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1481 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 870 |
| AatII | GACGTC | 1 cut(s) | 72 |
| Acc36I | ACCTGC | 1 cut(s) | 1481 |
| AccB1I | GGYRCC | 2 cut(s) | 719, 808 |
| AccBSI | CCGCTC | 1 cut(s) | 1564 |
| AciI | CCGC | 2 cut(s) | 167, 1564 |
| AcsI | RAATTY | 3 cut(s) | 449, 906, 1314 |
| AcyI | GRCGYC | 1 cut(s) | 69 |
| AfaI | GTAC | 6 cut(s) | 171, 545, 564, 622, 1073, 1169 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 203, 407, 476, 716, 1563 |
| AflII | CTTAAG | 1 cut(s) | 1358 |
| AgsI | TTSAA | 9 cut(s) | 157, 283, 536, 631, 683, 985, 1345, 1552, 1586 |
| AjnI | CCWGG | 4 cut(s) | 52, 637, 1041, 1530 |
| AluBI | AGCT | 5 cut(s) | 789, 1021, 1037, 1138, 1610 |
| AluI | AGCT | 5 cut(s) | 789, 1021, 1037, 1138, 1610 |
| Alw26I | GTCTC | 3 cut(s) | 405, 468, 850 |
| ApeKI | GCWGC | 6 cut(s) | 79, 318, 359, 662, 760, 786 |
| ApoI | RAATTY | 3 cut(s) | 449, 906, 1314 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1073 |
| AspS9I | GGNCC | 4 cut(s) | 41, 385, 1145, 1496 |
| AsuHPI | GGTGA | 1 cut(s) | 1219 |
| AsuII | TTCGAA | 1 cut(s) | 1016 |
| AvaII | GGWCC | 4 cut(s) | 41, 385, 1145, 1496 |
| AxyI | CCTNAGG | 1 cut(s) | 1227 |
| BanI | GGYRCC | 2 cut(s) | 719, 808 |
| BanII | GRGCYC | 1 cut(s) | 710 |
| BbvI | GCAGC | 6 cut(s) | 91, 305, 346, 649, 747, 798 |
| BccI | CCATC | 5 cut(s) | 107, 647, 1125, 1155, 1197 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 179, 213 |
| BciT130I | CCWGG | 4 cut(s) | 54, 639, 1043, 1532 |
| BciVI | GTATCC | 1 cut(s) | 1520 |
| BclI | TGATCA | 1 cut(s) | 259 |
| BcoDI | GTCTC | 3 cut(s) | 405, 468, 850 |
| BfaI | CTAG | 4 cut(s) | 539, 938, 1022, 1629 |
| BfmI | CTRYAG | 1 cut(s) | 849 |
| BfrI | CTTAAG | 1 cut(s) | 1358 |
| BfuAI | ACCTGC | 1 cut(s) | 1481 |
| BfuI | GTATCC | 1 cut(s) | 1520 |
| BisI | GCNGC | 6 cut(s) | 80, 319, 360, 663, 761, 787 |
| BlsI | GCNGC | 6 cut(s) | 81, 320, 361, 664, 762, 788 |
| BmcAI | AGTACT | 2 cut(s) | 545, 1073 |
| Bme1390I | CCNGG | 4 cut(s) | 54, 639, 1043, 1532 |
| Bme18I | GGWCC | 4 cut(s) | 41, 385, 1145, 1496 |
| BmgT120I | GGNCC | 4 cut(s) | 41, 385, 1145, 1496 |
| BmiI | GGNNCC | 2 cut(s) | 721, 810 |
| BmrFI | CCNGG | 4 cut(s) | 54, 639, 1043, 1532 |
| BmsI | GCATC | 6 cut(s) | 124, 322, 598, 1231, 1288, 1603 |
| Bpu14I | TTCGAA | 1 cut(s) | 1016 |
| BpuEI | CTTGAG | 1 cut(s) | 1085 |
| Bsa29I | ATCGAT | 1 cut(s) | 1008 |
| BsaHI | GRCGYC | 1 cut(s) | 69 |
| BsaJI | CCNNGG | 1 cut(s) | 1557 |
| BsaWI | WCCGGW | 2 cut(s) | 407, 816 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 402, 432 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 203, 407, 476, 716, 1563 |
| Bse118I | RCCGGY | 1 cut(s) | 946 |
| Bse1I | ACTGG | 3 cut(s) | 551, 721, 1148 |
| Bse21I | CCTNAGG | 1 cut(s) | 1227 |
| Bse3DI | GCAATG | 1 cut(s) | 1623 |
| BseBI | CCWGG | 4 cut(s) | 54, 639, 1043, 1532 |
| BseCI | ATCGAT | 1 cut(s) | 1008 |
| BseDI | CCNNGG | 1 cut(s) | 1557 |
| BseGI | GGATG | 6 cut(s) | 118, 337, 658, 1170, 1208, 1222 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 203, 407, 476, 716, 1563 |
| BseMI | GCAATG | 1 cut(s) | 1623 |
| BseMII | CTCAG | 2 cut(s) | 1218, 1404 |
| BseNI | ACTGG | 3 cut(s) | 551, 721, 1148 |
| BseRI | GAGGAG | 2 cut(s) | 164, 462 |
| BseXI | GCAGC | 6 cut(s) | 91, 305, 346, 649, 747, 798 |
| BshNI | GGYRCC | 2 cut(s) | 719, 808 |
| BshVI | ATCGAT | 1 cut(s) | 1008 |
| BsiSI | CCGG | 3 cut(s) | 408, 817, 947 |
| BsiWI | CGTACG | 1 cut(s) | 562 |
| BslFI | GGGAC | 2 cut(s) | 161, 743 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 203, 407, 476, 716, 1563 |
| BsmAI | GTCTC | 3 cut(s) | 405, 468, 850 |
| BsmBI | CGTCTC | 1 cut(s) | 405 |
| BsmFI | GGGAC | 2 cut(s) | 161, 743 |
| Bsp119I | TTCGAA | 1 cut(s) | 1016 |
| Bsp1286I | GDGCHC | 1 cut(s) | 710 |
| Bsp143I | GATC | 2 cut(s) | 259, 1005 |
| BspACI | CCGC | 2 cut(s) | 167, 1564 |
| BspCNI | CTCAG | 2 cut(s) | 1219, 1405 |
| BspDI | ATCGAT | 1 cut(s) | 1008 |
| BspHI | TCATGA | 2 cut(s) | 306, 1098 |
| BspLI | GGNNCC | 2 cut(s) | 721, 810 |
| BspMI | ACCTGC | 1 cut(s) | 1481 |
| BspT104I | TTCGAA | 1 cut(s) | 1016 |
| BspT107I | GGYRCC | 2 cut(s) | 719, 808 |
| BspTI | CTTAAG | 1 cut(s) | 1358 |
| BsrBI | CCGCTC | 1 cut(s) | 1564 |
| BsrDI | GCAATG | 1 cut(s) | 1623 |
| BsrFI | RCCGGY | 1 cut(s) | 946 |
| BsrI | ACTGG | 3 cut(s) | 551, 721, 1148 |
| BssAI | RCCGGY | 1 cut(s) | 946 |
| BssECI | CCNNGG | 1 cut(s) | 1557 |
| BssMI | GATC | 2 cut(s) | 259, 1005 |
| BssNI | GRCGYC | 1 cut(s) | 69 |
| BssT1I | CCWWGG | 1 cut(s) | 1557 |
| Bst2UI | CCWGG | 4 cut(s) | 54, 639, 1043, 1532 |
| Bst4CI | ACNGT | 7 cut(s) | 354, 808, 898, 1054, 1114, 1592, 1676 |
| Bst6I | CTCTTC | 2 cut(s) | 375, 1254 |
| BstACI | GRCGYC | 1 cut(s) | 69 |
| BstAFI | CTTAAG | 1 cut(s) | 1358 |
| BstBI | TTCGAA | 1 cut(s) | 1016 |
| BstC8I | GCNNGC | 4 cut(s) | 1035, 1220, 1488, 1608 |
| BstDEI | CTNAG | 2 cut(s) | 1227, 1413 |
| BstF5I | GGATG | 6 cut(s) | 118, 337, 658, 1170, 1208, 1222 |
| BstKTI | GATC | 2 cut(s) | 262, 1008 |
| BstMAI | GTCTC | 3 cut(s) | 405, 468, 850 |
| BstMBI | GATC | 2 cut(s) | 259, 1005 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1307 |
| BstNI | CCWGG | 4 cut(s) | 54, 639, 1043, 1532 |
| BstSCI | CCNGG | 4 cut(s) | 52, 637, 1041, 1530 |
| BstSFI | CTRYAG | 1 cut(s) | 849 |
| BstV1I | GCAGC | 6 cut(s) | 91, 305, 346, 649, 747, 798 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1538 |
| Bsu15I | ATCGAT | 1 cut(s) | 1008 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1227 |
| BsuI | GTATCC | 1 cut(s) | 1520 |
| BsuTUI | ATCGAT | 1 cut(s) | 1008 |
| BtgZI | GCGATG | 1 cut(s) | 299 |
| BtsCI | GGATG | 6 cut(s) | 118, 337, 658, 1170, 1208, 1222 |
| BtsIMutI | CAGTG | 2 cut(s) | 1597, 1681 |
| BveI | ACCTGC | 1 cut(s) | 1481 |
| Cac8I | GCNNGC | 4 cut(s) | 1035, 1220, 1488, 1608 |
| CciI | TCATGA | 2 cut(s) | 306, 1098 |
| Cfr10I | RCCGGY | 1 cut(s) | 946 |
| Cfr13I | GGNCC | 4 cut(s) | 41, 385, 1145, 1496 |
| ClaI | ATCGAT | 1 cut(s) | 1008 |
| CsiI | ACCWGGT | 3 cut(s) | 52, 1041, 1530 |
| Csp6I | GTAC | 6 cut(s) | 170, 544, 563, 621, 1072, 1168 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 261, 296 |
| CviQI | GTAC | 6 cut(s) | 170, 544, 563, 621, 1072, 1168 |
| DdeI | CTNAG | 2 cut(s) | 1227, 1413 |
| DpnI | GATC | 2 cut(s) | 261, 1007 |
| DpnII | GATC | 2 cut(s) | 259, 1005 |
| DraI | TTTAAA | 1 cut(s) | 1198 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 870 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 870 |
| Eam1104I | CTCTTC | 2 cut(s) | 375, 1254 |
| EarI | CTCTTC | 2 cut(s) | 375, 1254 |
| Eco130I | CCWWGG | 1 cut(s) | 1557 |
| Eco24I | GRGCYC | 1 cut(s) | 710 |
| Eco47I | GGWCC | 4 cut(s) | 41, 385, 1145, 1496 |
| Eco81I | CCTNAGG | 1 cut(s) | 1227 |
| EcoO109I | RGGNCCY | 1 cut(s) | 385 |
| EcoRI | GAATTC | 1 cut(s) | 1314 |
| EcoRII | CCWGG | 4 cut(s) | 52, 637, 1041, 1530 |
| EcoT14I | CCWWGG | 1 cut(s) | 1557 |
| EcoT22I | ATGCAT | 1 cut(s) | 139 |
| EcoT38I | GRGCYC | 1 cut(s) | 710 |
| ErhI | CCWWGG | 1 cut(s) | 1557 |
| Esp3I | CGTCTC | 1 cut(s) | 405 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 372, 404 |
| FaqI | GGGAC | 2 cut(s) | 161, 743 |
| FauI | CCCGC | 1 cut(s) | 1557 |
| FbaI | TGATCA | 1 cut(s) | 259 |
| Fnu4HI | GCNGC | 6 cut(s) | 80, 319, 360, 663, 761, 787 |
| FokI | GGATG | 6 cut(s) | 125, 324, 665, 1177, 1209, 1215 |
| FriOI | GRGCYC | 1 cut(s) | 710 |
| Fsp4HI | GCNGC | 6 cut(s) | 80, 319, 360, 663, 761, 787 |
| FspBI | CTAG | 4 cut(s) | 539, 938, 1022, 1629 |
| GluI | GCNGC | 6 cut(s) | 80, 319, 360, 663, 761, 787 |
| HapII | CCGG | 3 cut(s) | 408, 817, 947 |
| Hin1I | GRCGYC | 1 cut(s) | 69 |
| HincII | GTYRAC | 1 cut(s) | 24 |
| HindII | GTYRAC | 1 cut(s) | 24 |
| HinfI | GANTC | 3 cut(s) | 95, 436, 1102 |
| HpaII | CCGG | 3 cut(s) | 408, 817, 947 |
| HphI | GGTGA | 1 cut(s) | 1219 |
| Hpy166II | GTNNAC | 3 cut(s) | 24, 1057, 1496 |
| Hpy188I | TCNGA | 3 cut(s) | 264, 441, 1471 |
| Hpy8I | GTNNAC | 3 cut(s) | 24, 1057, 1496 |
| HpyAV | CCTTC | 3 cut(s) | 138, 1092, 1183 |
| HpyCH4III | ACNGT | 7 cut(s) | 354, 808, 898, 1054, 1114, 1592, 1676 |
| HpyCH4IV | ACGT | 5 cut(s) | 26, 69, 565, 623, 1285 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1307 |
| HpyF3I | CTNAG | 2 cut(s) | 1227, 1413 |
| HpySE526I | ACGT | 5 cut(s) | 26, 69, 565, 623, 1285 |
| Hsp92I | GRCGYC | 1 cut(s) | 69 |
| Ksp22I | TGATCA | 1 cut(s) | 259 |
| Kzo9I | GATC | 2 cut(s) | 259, 1005 |
| LmnI | GCTCC | 2 cut(s) | 397, 1561 |
| Lsp1109I | GCAGC | 6 cut(s) | 91, 305, 346, 649, 747, 798 |
| LweI | GCATC | 6 cut(s) | 124, 322, 598, 1231, 1288, 1603 |
| MabI | ACCWGGT | 3 cut(s) | 52, 1041, 1530 |
| MaeI | CTAG | 4 cut(s) | 539, 938, 1022, 1629 |
| MaeII | ACGT | 5 cut(s) | 26, 69, 565, 623, 1285 |
| MaeIII | GTNAC | 7 cut(s) | 56, 233, 290, 735, 890, 1048, 1247 |
| MalI | GATC | 2 cut(s) | 261, 1007 |
| MbiI | CCGCTC | 1 cut(s) | 1564 |
| MboI | GATC | 2 cut(s) | 259, 1005 |
| MboII | GAAGA | 7 cut(s) | 16, 295, 392, 607, 902, 973, 1271 |
| MhlI | GDGCHC | 1 cut(s) | 710 |
| MluCI | AATT | 8 cut(s) | 101, 442, 449, 598, 777, 906, 963, 1314 |
| MlyI | GAGTC | 2 cut(s) | 89, 445 |
| MmeI | TCCRAC | 2 cut(s) | 491, 1680 |
| Mph1103I | ATGCAT | 1 cut(s) | 139 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1073 |
| MslI | CAYNNNNRTG | 2 cut(s) | 899, 1190 |
| MspCI | CTTAAG | 1 cut(s) | 1358 |
| MspI | CCGG | 3 cut(s) | 408, 817, 947 |
| MspR9I | CCNGG | 4 cut(s) | 54, 639, 1043, 1532 |
| MvaI | CCWGG | 4 cut(s) | 54, 639, 1043, 1532 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1307 |
| NdeII | GATC | 2 cut(s) | 259, 1005 |
| NlaIV | GGNNCC | 2 cut(s) | 721, 810 |
| NmuCI | GTSAC | 1 cut(s) | 890 |
| NsiI | ATGCAT | 1 cut(s) | 139 |
| NspV | TTCGAA | 1 cut(s) | 1016 |
| PagI | TCATGA | 2 cut(s) | 306, 1098 |
| PaqCI | CACCTGC | 1 cut(s) | 1481 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 66 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1073 |
| PfeI | GAWTC | 1 cut(s) | 1102 |
| Pfl23II | CGTACG | 1 cut(s) | 562 |
| PkrI | GCNGC | 6 cut(s) | 81, 320, 361, 664, 762, 788 |
| PleI | GAGTC | 2 cut(s) | 89, 444 |
| PpsI | GAGTC | 2 cut(s) | 89, 444 |
| PpuMI | RGGWCCY | 1 cut(s) | 385 |
| Psp5II | RGGWCCY | 1 cut(s) | 385 |
| Psp6I | CCWGG | 4 cut(s) | 52, 637, 1041, 1530 |
| PspGI | CCWGG | 4 cut(s) | 52, 637, 1041, 1530 |
| PspLI | CGTACG | 1 cut(s) | 562 |
| PspN4I | GGNNCC | 2 cut(s) | 721, 810 |
| PspPI | GGNCC | 4 cut(s) | 41, 385, 1145, 1496 |
| PspPPI | RGGWCCY | 1 cut(s) | 385 |
| RsaI | GTAC | 6 cut(s) | 171, 545, 564, 622, 1073, 1169 |
| RsaNI | GTAC | 6 cut(s) | 170, 544, 563, 621, 1072, 1168 |
| RseI | CAYNNNNRTG | 2 cut(s) | 899, 1190 |
| SatI | GCNGC | 6 cut(s) | 80, 319, 360, 663, 761, 787 |
| Sau3AI | GATC | 2 cut(s) | 259, 1005 |
| Sau96I | GGNCC | 4 cut(s) | 41, 385, 1145, 1496 |
| ScaI | AGTACT | 2 cut(s) | 545, 1073 |
| SchI | GAGTC | 2 cut(s) | 89, 445 |
| ScrFI | CCNGG | 4 cut(s) | 54, 639, 1043, 1532 |
| SduI | GDGCHC | 1 cut(s) | 710 |
| SexAI | ACCWGGT | 3 cut(s) | 52, 1041, 1530 |
| SfaNI | GCATC | 6 cut(s) | 124, 322, 598, 1231, 1288, 1603 |
| SfcI | CTRYAG | 1 cut(s) | 849 |
| SfuI | TTCGAA | 1 cut(s) | 1016 |
| SinI | GGWCC | 4 cut(s) | 41, 385, 1145, 1496 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 899, 1190 |
| SmlI | CTYRAG | 2 cut(s) | 1064, 1358 |
| SmoI | CTYRAG | 2 cut(s) | 1064, 1358 |
| Sse9I | AATT | 8 cut(s) | 101, 442, 449, 598, 777, 906, 963, 1314 |
| SsiI | CCGC | 2 cut(s) | 167, 1564 |
| SspMI | CTAG | 4 cut(s) | 539, 938, 1022, 1629 |
| StyD4I | CCNGG | 4 cut(s) | 52, 637, 1041, 1530 |
| StyI | CCWWGG | 1 cut(s) | 1557 |
| TaaI | ACNGT | 7 cut(s) | 354, 808, 898, 1054, 1114, 1592, 1676 |
| TaiI | ACGT | 5 cut(s) | 29, 72, 568, 626, 1288 |
| TasI | AATT | 8 cut(s) | 101, 442, 449, 598, 777, 906, 963, 1314 |
| TatI | WGTACW | 2 cut(s) | 543, 1071 |
| TfiI | GAWTC | 1 cut(s) | 1102 |
| TscAI | CASTG | 2 cut(s) | 1597, 1681 |
| TseFI | GTSAC | 1 cut(s) | 890 |
| TseI | GCWGC | 6 cut(s) | 79, 318, 359, 662, 760, 786 |
| Tsp45I | GTSAC | 1 cut(s) | 890 |
| TspDTI | ATGAA | 8 cut(s) | 17, 295, 783, 813, 1094, 1202, 1455, 1521 |
| TspRI | CASTG | 2 cut(s) | 1597, 1681 |
| Vha464I | CTTAAG | 1 cut(s) | 1358 |
| VpaK11BI | GGWCC | 4 cut(s) | 41, 385, 1145, 1496 |
| XapI | RAATTY | 3 cut(s) | 449, 906, 1314 |
| XbaI | TCTAGA | 2 cut(s) | 937, 1628 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1073 |
| XspI | CTAG | 4 cut(s) | 539, 938, 1022, 1629 |
| ZraI | GACGTC | 1 cut(s) | 70 |
| ZrmI | AGTACT | 2 cut(s) | 545, 1073 |
| Zsp2I | ATGCAT | 1 cut(s) | 139 |