source UniProtKB
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transposase_21 | PF02992 | 1 - 46 | 2.6e-06 | Transposase family tnp2 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1657 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 110, 1332 |
| AccI | GTMKAC | 2 cut(s) | 755, 1562 |
| AccII | CGCG | 1 cut(s) | 712 |
| AciI | CCGC | 3 cut(s) | 884, 957, 1028 |
| AclWI | GGATC | 2 cut(s) | 1124, 1207 |
| AcoI | YGGCCR | 1 cut(s) | 1392 |
| AcsI | RAATTY | 2 cut(s) | 448, 1017 |
| AcuI | CTGAAG | 1 cut(s) | 836 |
| AcyI | GRCGYC | 1 cut(s) | 1658 |
| AdeI | CACNNNGTG | 1 cut(s) | 592 |
| AfaI | GTAC | 6 cut(s) | 602, 838, 871, 1187, 1207, 1752 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 55, 110, 312, 1332 |
| AflII | CTTAAG | 1 cut(s) | 569 |
| AgeI | ACCGGT | 1 cut(s) | 1565 |
| AgsI | TTSAA | 9 cut(s) | 13, 137, 230, 236, 325, 400, 652, 984, 1652 |
| AjnI | CCWGG | 1 cut(s) | 331 |
| AleI | CACNNNNGTG | 1 cut(s) | 1595 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 105, 137, 486, 518 |
| AluBI | AGCT | 9 cut(s) | 410, 725, 731, 1123, 1294, 1529, 1626, 1678, 1683 |
| AluI | AGCT | 9 cut(s) | 410, 725, 731, 1123, 1294, 1529, 1626, 1678, 1683 |
| Alw21I | GWGCWC | 1 cut(s) | 1680 |
| Alw26I | GTCTC | 1 cut(s) | 544 |
| AlwI | GGATC | 2 cut(s) | 1124, 1207 |
| AoxI | GGCC | 3 cut(s) | 423, 963, 1392 |
| ApeKI | GCWGC | 8 cut(s) | 59, 62, 454, 749, 1169, 1555, 1626, 1820 |
| ApoI | RAATTY | 2 cut(s) | 448, 1017 |
| AsiGI | ACCGGT | 1 cut(s) | 1565 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 120, 1017, 1278, 1697 |
| AspLEI | GCGC | 1 cut(s) | 1660 |
| AspS9I | GGNCC | 2 cut(s) | 315, 1318 |
| AsuHPI | GGTGA | 2 cut(s) | 197, 1365 |
| AvaII | GGWCC | 2 cut(s) | 315, 1318 |
| AxyI | CCTNAGG | 1 cut(s) | 1377 |
| BanI | GGYRCC | 1 cut(s) | 1657 |
| BanII | GRGCYC | 1 cut(s) | 1680 |
| BbsI | GAAGAC | 2 cut(s) | 866, 1394 |
| Bbv12I | GWGCWC | 1 cut(s) | 1680 |
| BbvI | GCAGC | 8 cut(s) | 46, 74, 441, 761, 1156, 1542, 1613, 1807 |
| BccI | CCATC | 4 cut(s) | 341, 1069, 1226, 1352 |
| BceAI | ACGGC | 1 cut(s) | 1407 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1691, 1725 |
| BciT130I | CCWGG | 1 cut(s) | 333 |
| BciVI | GTATCC | 1 cut(s) | 1494 |
| BclI | TGATCA | 2 cut(s) | 187, 1107 |
| BcoDI | GTCTC | 1 cut(s) | 544 |
| BfaI | CTAG | 3 cut(s) | 441, 632, 789 |
| BfmI | CTRYAG | 4 cut(s) | 60, 726, 825, 1556 |
| BfoI | RGCGCY | 1 cut(s) | 1661 |
| BfrI | CTTAAG | 1 cut(s) | 569 |
| BfuI | GTATCC | 1 cut(s) | 1494 |
| BisI | GCNGC | 8 cut(s) | 60, 63, 455, 750, 1170, 1556, 1627, 1821 |
| BlpI | GCTNAGC | 1 cut(s) | 1679 |
| BlsI | GCNGC | 8 cut(s) | 61, 64, 456, 751, 1171, 1557, 1628, 1822 |
| Bme1390I | CCNGG | 1 cut(s) | 333 |
| Bme18I | GGWCC | 2 cut(s) | 315, 1318 |
| BmgT120I | GGNCC | 2 cut(s) | 315, 1318 |
| BmiI | GGNNCC | 3 cut(s) | 316, 317, 1659 |
| BmrFI | CCNGG | 1 cut(s) | 333 |
| BpiI | GAAGAC | 2 cut(s) | 866, 1394 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1667, 1699 |
| BpmI | CTGGAG | 1 cut(s) | 1068 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1761 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1679 |
| BpuEI | CTTGAG | 2 cut(s) | 864, 917 |
| Bsa29I | ATCGAT | 1 cut(s) | 798 |
| BsaAI | YACGTR | 2 cut(s) | 869, 1205 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1063, 1217 |
| BsaHI | GRCGYC | 1 cut(s) | 1658 |
| BsaI | GGTCTC | 1 cut(s) | 544 |
| BsaJI | CCNNGG | 2 cut(s) | 543, 846 |
| BsaWI | WCCGGW | 1 cut(s) | 1565 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 105, 135 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 55, 110, 312, 1332 |
| Bse118I | RCCGGY | 1 cut(s) | 1565 |
| Bse1I | ACTGG | 7 cut(s) | 245, 564, 834, 972, 987, 1051, 1595 |
| Bse21I | CCTNAGG | 1 cut(s) | 1377 |
| Bse3DI | GCAATG | 1 cut(s) | 1788 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1063, 1217 |
| BseBI | CCWGG | 1 cut(s) | 333 |
| BseCI | ATCGAT | 1 cut(s) | 798 |
| BseDI | CCNNGG | 2 cut(s) | 543, 846 |
| BseGI | GGATG | 7 cut(s) | 40, 352, 892, 1252, 1363, 1735, 1798 |
| BseJI | GATNNNNATC | 2 cut(s) | 1063, 1217 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 55, 110, 312, 1332 |
| BseMI | GCAATG | 1 cut(s) | 1788 |
| BseMII | CTCAG | 4 cut(s) | 1368, 1544, 1693, 1704 |
| BseNI | ACTGG | 7 cut(s) | 245, 564, 834, 972, 987, 1051, 1595 |
| BseRI | GAGGAG | 4 cut(s) | 867, 1451, 1463, 1496 |
| BseXI | GCAGC | 8 cut(s) | 46, 74, 441, 761, 1156, 1542, 1613, 1807 |
| BseYI | CCCAGC | 2 cut(s) | 410, 1294 |
| Bsh1236I | CGCG | 1 cut(s) | 712 |
| BshFI | GGCC | 3 cut(s) | 425, 965, 1394 |
| BshNI | GGYRCC | 1 cut(s) | 1657 |
| BshTI | ACCGGT | 1 cut(s) | 1565 |
| BshVI | ATCGAT | 1 cut(s) | 798 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1680 |
| BsiSI | CCGG | 2 cut(s) | 1566, 1661 |
| BsiWI | CGTACG | 1 cut(s) | 1205 |
| BslFI | GGGAC | 4 cut(s) | 328, 673, 1162, 1286 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 55, 110, 312, 1332 |
| BsmAI | GTCTC | 1 cut(s) | 544 |
| BsmFI | GGGAC | 4 cut(s) | 328, 673, 1162, 1286 |
| BsmI | GAATGC | 2 cut(s) | 778, 1345 |
| BsnI | GGCC | 3 cut(s) | 425, 965, 1394 |
| Bso31I | GGTCTC | 1 cut(s) | 544 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1680 |
| Bsp143I | GATC | 6 cut(s) | 187, 623, 1107, 1116, 1212, 1686 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1679 |
| Bsp19I | CCATGG | 1 cut(s) | 543 |
| BspACI | CCGC | 3 cut(s) | 884, 957, 1028 |
| BspANI | GGCC | 3 cut(s) | 425, 965, 1394 |
| BspCNI | CTCAG | 4 cut(s) | 1369, 1543, 1692, 1705 |
| BspDI | ATCGAT | 1 cut(s) | 798 |
| BspFNI | CGCG | 1 cut(s) | 712 |
| BspHI | TCATGA | 1 cut(s) | 460 |
| BspLI | GGNNCC | 3 cut(s) | 316, 317, 1659 |
| BspMAI | CTGCAG | 2 cut(s) | 64, 1560 |
| BspPI | GGATC | 2 cut(s) | 1124, 1207 |
| BspT107I | GGYRCC | 1 cut(s) | 1657 |
| BspTI | CTTAAG | 1 cut(s) | 569 |
| BspTNI | GGTCTC | 1 cut(s) | 544 |
| BsrDI | GCAATG | 1 cut(s) | 1788 |
| BsrFI | RCCGGY | 1 cut(s) | 1565 |
| BsrI | ACTGG | 7 cut(s) | 245, 564, 834, 972, 987, 1051, 1595 |
| BssAI | RCCGGY | 1 cut(s) | 1565 |
| BssECI | CCNNGG | 2 cut(s) | 543, 846 |
| BssMI | GATC | 6 cut(s) | 187, 623, 1107, 1116, 1212, 1686 |
| BssNI | GRCGYC | 1 cut(s) | 1658 |
| BssT1I | CCWWGG | 2 cut(s) | 543, 846 |
| Bst2UI | CCWGG | 1 cut(s) | 333 |
| Bst4CI | ACNGT | 4 cut(s) | 592, 829, 1322, 1545 |
| Bst6I | CTCTTC | 2 cut(s) | 111, 1688 |
| BstACI | GRCGYC | 1 cut(s) | 1658 |
| BstAFI | CTTAAG | 1 cut(s) | 569 |
| BstBAI | YACGTR | 2 cut(s) | 869, 1205 |
| BstC8I | GCNNGC | 4 cut(s) | 57, 174, 358, 723 |
| BstDEI | CTNAG | 7 cut(s) | 1198, 1287, 1377, 1530, 1679, 1713, 1761 |
| BstDSI | CCRYGG | 1 cut(s) | 543 |
| BstF5I | GGATG | 7 cut(s) | 40, 352, 892, 1252, 1363, 1735, 1798 |
| BstFNI | CGCG | 1 cut(s) | 712 |
| BstH2I | RGCGCY | 1 cut(s) | 1661 |
| BstHHI | GCGC | 1 cut(s) | 1660 |
| BstKTI | GATC | 6 cut(s) | 190, 626, 1110, 1119, 1215, 1689 |
| BstMAI | GTCTC | 1 cut(s) | 544 |
| BstMBI | GATC | 6 cut(s) | 187, 623, 1107, 1116, 1212, 1686 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 178, 718, 932, 1283, 1391, 1817 |
| BstNI | CCWGG | 1 cut(s) | 333 |
| BstNSI | RCATGY | 1 cut(s) | 223 |
| BstSCI | CCNGG | 1 cut(s) | 331 |
| BstSFI | CTRYAG | 4 cut(s) | 60, 726, 825, 1556 |
| BstSNI | TACGTA | 1 cut(s) | 869 |
| BstUI | CGCG | 1 cut(s) | 712 |
| BstV1I | GCAGC | 8 cut(s) | 46, 74, 441, 761, 1156, 1542, 1613, 1807 |
| BstV2I | GAAGAC | 2 cut(s) | 866, 1394 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1075 |
| Bsu15I | ATCGAT | 1 cut(s) | 798 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1377 |
| BsuI | GTATCC | 1 cut(s) | 1494 |
| BsuRI | GGCC | 3 cut(s) | 425, 965, 1394 |
| BsuTUI | ATCGAT | 1 cut(s) | 798 |
| BtgI | CCRYGG | 1 cut(s) | 543 |
| BtsCI | GGATG | 7 cut(s) | 40, 352, 892, 1252, 1363, 1735, 1798 |
| BtsI | GCAGTG | 1 cut(s) | 933 |
| BtsIMutI | CAGTG | 5 cut(s) | 597, 933, 994, 1541, 1602 |
| Cac8I | GCNNGC | 4 cut(s) | 57, 174, 358, 723 |
| CciI | TCATGA | 1 cut(s) | 460 |
| CfoI | GCGC | 1 cut(s) | 1660 |
| Cfr10I | RCCGGY | 1 cut(s) | 1565 |
| Cfr13I | GGNCC | 2 cut(s) | 315, 1318 |
| ClaI | ATCGAT | 1 cut(s) | 798 |
| CseI | GACGC | 2 cut(s) | 718, 741 |
| Csp6I | GTAC | 6 cut(s) | 601, 837, 870, 1186, 1206, 1751 |
| CspAI | ACCGGT | 1 cut(s) | 1565 |
| CviAII | CATG | 7 cut(s) | 220, 370, 461, 544, 578, 1025, 1745 |
| CviQI | GTAC | 6 cut(s) | 601, 837, 870, 1186, 1206, 1751 |
| DdeI | CTNAG | 7 cut(s) | 1198, 1287, 1377, 1530, 1679, 1713, 1761 |
| DinI | GGCGCC | 1 cut(s) | 1659 |
| DpnI | GATC | 6 cut(s) | 189, 625, 1109, 1118, 1214, 1688 |
| DpnII | GATC | 6 cut(s) | 187, 623, 1107, 1116, 1212, 1686 |
| DraI | TTTAAA | 1 cut(s) | 555 |
| DraIII | CACNNNGTG | 1 cut(s) | 592 |
| EaeI | YGGCCR | 1 cut(s) | 1392 |
| Eam1104I | CTCTTC | 2 cut(s) | 111, 1688 |
| EarI | CTCTTC | 2 cut(s) | 111, 1688 |
| Ecl136II | GAGCTC | 1 cut(s) | 1678 |
| Eco105I | TACGTA | 1 cut(s) | 869 |
| Eco130I | CCWWGG | 2 cut(s) | 543, 846 |
| Eco24I | GRGCYC | 1 cut(s) | 1680 |
| Eco31I | GGTCTC | 1 cut(s) | 544 |
| Eco47I | GGWCC | 2 cut(s) | 315, 1318 |
| Eco53kI | GAGCTC | 1 cut(s) | 1678 |
| Eco57I | CTGAAG | 1 cut(s) | 836 |
| Eco81I | CCTNAGG | 1 cut(s) | 1377 |
| EcoICRI | GAGCTC | 1 cut(s) | 1678 |
| EcoO109I | RGGNCCY | 1 cut(s) | 315 |
| EcoRII | CCWGG | 1 cut(s) | 331 |
| EcoT14I | CCWWGG | 2 cut(s) | 543, 846 |
| EcoT38I | GRGCYC | 1 cut(s) | 1680 |
| EgeI | GGCGCC | 1 cut(s) | 1659 |
| EheI | GGCGCC | 1 cut(s) | 1659 |
| ErhI | CCWWGG | 2 cut(s) | 543, 846 |
| FaeI | CATG | 7 cut(s) | 223, 373, 464, 547, 581, 1028, 1748 |
| FaqI | GGGAC | 4 cut(s) | 328, 673, 1162, 1286 |
| FatI | CATG | 7 cut(s) | 219, 369, 460, 543, 577, 1024, 1744 |
| FauI | CCCGC | 1 cut(s) | 950 |
| FbaI | TGATCA | 2 cut(s) | 187, 1107 |
| FblI | GTMKAC | 2 cut(s) | 755, 1562 |
| Fnu4HI | GCNGC | 8 cut(s) | 60, 63, 455, 750, 1170, 1556, 1627, 1821 |
| FokI | GGATG | 7 cut(s) | 27, 359, 899, 1259, 1370, 1742, 1805 |
| FriOI | GRGCYC | 1 cut(s) | 1680 |
| Fsp4HI | GCNGC | 8 cut(s) | 60, 63, 455, 750, 1170, 1556, 1627, 1821 |
| FspBI | CTAG | 3 cut(s) | 441, 632, 789 |
| GlaI | GCGC | 1 cut(s) | 1659 |
| GluI | GCNGC | 8 cut(s) | 60, 63, 455, 750, 1170, 1556, 1627, 1821 |
| GsaI | CCCAGC | 2 cut(s) | 414, 1298 |
| GsuI | CTGGAG | 1 cut(s) | 1068 |
| HaeII | RGCGCY | 1 cut(s) | 1661 |
| HaeIII | GGCC | 3 cut(s) | 425, 965, 1394 |
| HapII | CCGG | 2 cut(s) | 1566, 1661 |
| HgaI | GACGC | 2 cut(s) | 718, 741 |
| HhaI | GCGC | 1 cut(s) | 1660 |
| Hin1I | GRCGYC | 1 cut(s) | 1658 |
| Hin1II | CATG | 7 cut(s) | 223, 373, 464, 547, 581, 1028, 1748 |
| Hin6I | GCGC | 1 cut(s) | 1658 |
| HinP1I | GCGC | 1 cut(s) | 1658 |
| HindIII | AAGCTT | 1 cut(s) | 1121 |
| HinfI | GANTC | 9 cut(s) | 16, 24, 699, 795, 851, 1133, 1299, 1538, 1698 |
| HpaII | CCGG | 2 cut(s) | 1566, 1661 |
| HphI | GGTGA | 2 cut(s) | 197, 1365 |
| Hpy166II | GTNNAC | 3 cut(s) | 756, 1563, 1600 |
| Hpy188I | TCNGA | 4 cut(s) | 736, 1112, 1138, 1351 |
| Hpy188III | TCNNGA | 9 cut(s) | 269, 322, 461, 632, 696, 1068, 1614, 1642, 1690 |
| Hpy8I | GTNNAC | 3 cut(s) | 756, 1563, 1600 |
| Hpy99I | CGWCG | 3 cut(s) | 24, 712, 1213 |
| HpyAV | CCTTC | 6 cut(s) | 131, 650, 814, 955, 1545, 1639 |
| HpyCH4III | ACNGT | 4 cut(s) | 592, 829, 1322, 1545 |
| HpyCH4IV | ACGT | 2 cut(s) | 868, 1204 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 178, 718, 932, 1283, 1391, 1817 |
| HpyF3I | CTNAG | 7 cut(s) | 1198, 1287, 1377, 1530, 1679, 1713, 1761 |
| HpySE526I | ACGT | 2 cut(s) | 868, 1204 |
| Hsp92I | GRCGYC | 1 cut(s) | 1658 |
| Hsp92II | CATG | 7 cut(s) | 223, 373, 464, 547, 581, 1028, 1748 |
| HspAI | GCGC | 1 cut(s) | 1658 |
| KasI | GGCGCC | 1 cut(s) | 1657 |
| KflI | GGGWCCC | 1 cut(s) | 315 |
| Ksp22I | TGATCA | 2 cut(s) | 187, 1107 |
| Kzo9I | GATC | 6 cut(s) | 187, 623, 1107, 1116, 1212, 1686 |
| LmnI | GCTCC | 2 cut(s) | 1623, 1816 |
| Lsp1109I | GCAGC | 8 cut(s) | 46, 74, 441, 761, 1156, 1542, 1613, 1807 |
| MaeI | CTAG | 3 cut(s) | 441, 632, 789 |
| MaeII | ACGT | 2 cut(s) | 868, 1204 |
| MaeIII | GTNAC | 6 cut(s) | 573, 1078, 1093, 1361, 1539, 1588 |
| MalI | GATC | 6 cut(s) | 189, 625, 1109, 1118, 1214, 1688 |
| MboI | GATC | 6 cut(s) | 187, 623, 1107, 1116, 1212, 1686 |
| MfeI | CAATTG | 1 cut(s) | 1305 |
| MhlI | GDGCHC | 1 cut(s) | 1680 |
| Mly113I | GGCGCC | 1 cut(s) | 1658 |
| MlyI | GAGTC | 2 cut(s) | 1308, 1547 |
| MmeI | TCCRAC | 1 cut(s) | 425 |
| MroXI | GAANNNNTTC | 4 cut(s) | 120, 1017, 1278, 1697 |
| MseI | TTAA | 5 cut(s) | 107, 554, 570, 620, 1846 |
| MslI | CAYNNNNRTG | 2 cut(s) | 593, 1595 |
| MspCI | CTTAAG | 1 cut(s) | 569 |
| MspI | CCGG | 2 cut(s) | 1566, 1661 |
| MspR9I | CCNGG | 1 cut(s) | 333 |
| MunI | CAATTG | 1 cut(s) | 1305 |
| Mva1269I | GAATGC | 2 cut(s) | 778, 1345 |
| MvaI | CCWGG | 1 cut(s) | 333 |
| MvnI | CGCG | 1 cut(s) | 712 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 178, 718, 932, 1283, 1391, 1817 |
| NarI | GGCGCC | 1 cut(s) | 1658 |
| NcoI | CCATGG | 1 cut(s) | 543 |
| NdeII | GATC | 6 cut(s) | 187, 623, 1107, 1116, 1212, 1686 |
| NlaIII | CATG | 7 cut(s) | 223, 373, 464, 547, 581, 1028, 1748 |
| NlaIV | GGNNCC | 3 cut(s) | 316, 317, 1659 |
| NmeAIII | GCCGAG | 1 cut(s) | 1023 |
| NmuCI | GTSAC | 3 cut(s) | 573, 1539, 1588 |
| NspI | RCATGY | 1 cut(s) | 223 |
| OliI | CACNNNNGTG | 1 cut(s) | 1595 |
| PagI | TCATGA | 1 cut(s) | 460 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 28 |
| PctI | GAATGC | 2 cut(s) | 778, 1345 |
| PdmI | GAANNNNTTC | 4 cut(s) | 120, 1017, 1278, 1697 |
| PfeI | GAWTC | 7 cut(s) | 16, 24, 699, 795, 851, 1133, 1698 |
| Pfl23II | CGTACG | 1 cut(s) | 1205 |
| PflFI | GACNNNGTC | 1 cut(s) | 371 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 110, 1332 |
| PinAI | ACCGGT | 1 cut(s) | 1565 |
| PkrI | GCNGC | 8 cut(s) | 61, 64, 456, 751, 1171, 1557, 1628, 1822 |
| PleI | GAGTC | 2 cut(s) | 1307, 1546 |
| PluTI | GGCGCC | 1 cut(s) | 1661 |
| PpsI | GAGTC | 2 cut(s) | 1307, 1546 |
| Ppu21I | YACGTR | 2 cut(s) | 869, 1205 |
| PpuMI | RGGWCCY | 1 cut(s) | 315 |
| Psp124BI | GAGCTC | 1 cut(s) | 1680 |
| Psp5II | RGGWCCY | 1 cut(s) | 315 |
| Psp6I | CCWGG | 1 cut(s) | 331 |
| PspFI | CCCAGC | 2 cut(s) | 410, 1294 |
| PspGI | CCWGG | 1 cut(s) | 331 |
| PspLI | CGTACG | 1 cut(s) | 1205 |
| PspN4I | GGNNCC | 3 cut(s) | 316, 317, 1659 |
| PspPI | GGNCC | 2 cut(s) | 315, 1318 |
| PspPPI | RGGWCCY | 1 cut(s) | 315 |
| PstI | CTGCAG | 2 cut(s) | 64, 1560 |
| PsyI | GACNNNGTC | 1 cut(s) | 371 |
| RsaI | GTAC | 6 cut(s) | 602, 838, 871, 1187, 1207, 1752 |
| RsaNI | GTAC | 6 cut(s) | 601, 837, 870, 1186, 1206, 1751 |
| RseI | CAYNNNNRTG | 2 cut(s) | 593, 1595 |
| SacI | GAGCTC | 1 cut(s) | 1680 |
| SaqAI | TTAA | 5 cut(s) | 107, 554, 570, 620, 1846 |
| SatI | GCNGC | 8 cut(s) | 60, 63, 455, 750, 1170, 1556, 1627, 1821 |
| Sau3AI | GATC | 6 cut(s) | 187, 623, 1107, 1116, 1212, 1686 |
| Sau96I | GGNCC | 2 cut(s) | 315, 1318 |
| SchI | GAGTC | 2 cut(s) | 1308, 1547 |
| ScrFI | CCNGG | 1 cut(s) | 333 |
| SduI | GDGCHC | 1 cut(s) | 1680 |
| SfcI | CTRYAG | 4 cut(s) | 60, 726, 825, 1556 |
| SfoI | GGCGCC | 1 cut(s) | 1659 |
| SinI | GGWCC | 2 cut(s) | 315, 1318 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 593, 1595 |
| SmlI | CTYRAG | 3 cut(s) | 569, 879, 896 |
| SmoI | CTYRAG | 3 cut(s) | 569, 879, 896 |
| SnaBI | TACGTA | 1 cut(s) | 869 |
| SsiI | CCGC | 3 cut(s) | 884, 957, 1028 |
| SspDI | GGCGCC | 1 cut(s) | 1657 |
| SspI | AATATT | 3 cut(s) | 328, 526, 1042 |
| SspMI | CTAG | 3 cut(s) | 441, 632, 789 |
| SstI | GAGCTC | 1 cut(s) | 1680 |
| StyD4I | CCNGG | 1 cut(s) | 331 |
| StyI | CCWWGG | 2 cut(s) | 543, 846 |
| TaaI | ACNGT | 4 cut(s) | 592, 829, 1322, 1545 |
| TaiI | ACGT | 2 cut(s) | 871, 1207 |
| TaqI | TCGA | 6 cut(s) | 22, 375, 798, 1641, 1685, 1701 |
| TaqII | GACCGA | 2 cut(s) | 554, 1087 |
| TatI | WGTACW | 1 cut(s) | 836 |
| TfiI | GAWTC | 7 cut(s) | 16, 24, 699, 795, 851, 1133, 1698 |
| Tru1I | TTAA | 5 cut(s) | 107, 554, 570, 620, 1846 |
| Tru9I | TTAA | 5 cut(s) | 107, 554, 570, 620, 1846 |
| TscAI | CASTG | 5 cut(s) | 597, 933, 994, 1548, 1602 |
| TseFI | GTSAC | 3 cut(s) | 573, 1539, 1588 |
| TseI | GCWGC | 8 cut(s) | 59, 62, 454, 749, 1169, 1555, 1626, 1820 |
| Tsp45I | GTSAC | 3 cut(s) | 573, 1539, 1588 |
| TspDTI | ATGAA | 7 cut(s) | 102, 936, 962, 1266, 1530, 1761, 1785 |
| TspRI | CASTG | 5 cut(s) | 597, 933, 994, 1548, 1602 |
| Tth111I | GACNNNGTC | 1 cut(s) | 371 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 110, 1332 |
| Vha464I | CTTAAG | 1 cut(s) | 569 |
| VpaK11BI | GGWCC | 2 cut(s) | 315, 1318 |
| XapI | RAATTY | 2 cut(s) | 448, 1017 |
| XbaI | TCTAGA | 1 cut(s) | 631 |
| XceI | RCATGY | 1 cut(s) | 223 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 433 |
| XmiI | GTMKAC | 2 cut(s) | 755, 1562 |
| XmnI | GAANNNNTTC | 4 cut(s) | 120, 1017, 1278, 1697 |
| XspI | CTAG | 3 cut(s) | 441, 632, 789 |