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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 116 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 22, 140 |
| AccI | GTMKAC | 1 cut(s) | 177 |
| AccII | CGCG | 2 cut(s) | 53, 63 |
| AciI | CCGC | 6 cut(s) | 58, 79, 99, 107, 123, 159 |
| AclWI | GGATC | 3 cut(s) | 79, 435, 511 |
| AcoI | YGGCCR | 1 cut(s) | 112 |
| AcsI | RAATTY | 1 cut(s) | 652 |
| AdeI | CACNNNGTG | 3 cut(s) | 140, 235, 387 |
| AfaI | GTAC | 1 cut(s) | 220 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 22, 94, 95, 140, 159 |
| AgsI | TTSAA | 2 cut(s) | 530, 545 |
| AjnI | CCWGG | 2 cut(s) | 109, 693 |
| AluBI | AGCT | 3 cut(s) | 28, 69, 634 |
| AluI | AGCT | 3 cut(s) | 28, 69, 634 |
| AlwI | GGATC | 3 cut(s) | 79, 435, 511 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 22 |
| Ama87I | CYCGRG | 2 cut(s) | 88, 94 |
| AoxI | GGCC | 1 cut(s) | 112 |
| ApeKI | GCWGC | 1 cut(s) | 171 |
| ApoI | RAATTY | 1 cut(s) | 652 |
| AspLEI | GCGC | 2 cut(s) | 53, 63 |
| AsuC2I | CCSGG | 2 cut(s) | 89, 90 |
| AsuHPI | GGTGA | 3 cut(s) | 112, 221, 629 |
| AvaI | CYCGRG | 2 cut(s) | 88, 94 |
| BanII | GRGCYC | 1 cut(s) | 95 |
| BbvI | GCAGC | 1 cut(s) | 183 |
| BccI | CCATC | 3 cut(s) | 201, 234, 256 |
| BceAI | ACGGC | 1 cut(s) | 99 |
| BciT130I | CCWGG | 2 cut(s) | 111, 695 |
| BciVI | GTATCC | 1 cut(s) | 347 |
| BcnI | CCSGG | 2 cut(s) | 89, 90 |
| BfuAI | ACCTGC | 1 cut(s) | 116 |
| BfuI | GTATCC | 1 cut(s) | 347 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 43, 111, 211 |
| BisI | GCNGC | 2 cut(s) | 59, 172 |
| BlsI | GCNGC | 2 cut(s) | 60, 173 |
| Bme1390I | CCNGG | 4 cut(s) | 89, 90, 111, 695 |
| BmeT110I | CYCGRG | 2 cut(s) | 88, 94 |
| BmrFI | CCNGG | 4 cut(s) | 89, 90, 111, 695 |
| BmsI | GCATC | 3 cut(s) | 24, 267, 663 |
| BpmI | CTGGAG | 1 cut(s) | 44 |
| BpuMI | CCSGG | 2 cut(s) | 89, 90 |
| BsaJI | CCNNGG | 2 cut(s) | 88, 693 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 22, 94, 95, 140, 159 |
| Bse1I | ACTGG | 1 cut(s) | 638 |
| BseBI | CCWGG | 2 cut(s) | 111, 695 |
| BseDI | CCNNGG | 2 cut(s) | 88, 693 |
| BseGI | GGATG | 3 cut(s) | 169, 193, 282 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 22, 94, 95, 140, 159 |
| BseNI | ACTGG | 1 cut(s) | 638 |
| BseRI | GAGGAG | 1 cut(s) | 644 |
| BseXI | GCAGC | 1 cut(s) | 183 |
| BseYI | CCCAGC | 1 cut(s) | 15 |
| BsgI | GTGCAG | 1 cut(s) | 578 |
| Bsh1236I | CGCG | 2 cut(s) | 53, 63 |
| BshFI | GGCC | 1 cut(s) | 114 |
| BsiHKCI | CYCGRG | 2 cut(s) | 88, 94 |
| BsiSI | CCGG | 1 cut(s) | 89 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 22, 94, 95, 140, 159 |
| BsnI | GGCC | 1 cut(s) | 114 |
| BsoBI | CYCGRG | 2 cut(s) | 88, 94 |
| Bsp1286I | GDGCHC | 1 cut(s) | 95 |
| Bsp143I | GATC | 4 cut(s) | 73, 84, 427, 503 |
| BspACI | CCGC | 6 cut(s) | 58, 79, 99, 107, 123, 159 |
| BspANI | GGCC | 1 cut(s) | 114 |
| BspFNI | CGCG | 2 cut(s) | 53, 63 |
| BspMI | ACCTGC | 1 cut(s) | 116 |
| BspPI | GGATC | 3 cut(s) | 79, 435, 511 |
| BsrI | ACTGG | 1 cut(s) | 638 |
| BssECI | CCNNGG | 2 cut(s) | 88, 693 |
| BssMI | GATC | 4 cut(s) | 73, 84, 427, 503 |
| Bst2UI | CCWGG | 2 cut(s) | 111, 695 |
| Bst4CI | ACNGT | 1 cut(s) | 365 |
| BstC8I | GCNNGC | 3 cut(s) | 81, 107, 282 |
| BstF5I | GGATG | 3 cut(s) | 169, 193, 282 |
| BstFNI | CGCG | 2 cut(s) | 53, 63 |
| BstHHI | GCGC | 2 cut(s) | 53, 63 |
| BstKTI | GATC | 4 cut(s) | 76, 87, 430, 506 |
| BstMBI | GATC | 4 cut(s) | 73, 84, 427, 503 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 25, 34, 43, 111, 211 |
| BstNI | CCWGG | 2 cut(s) | 111, 695 |
| BstNSI | RCATGY | 1 cut(s) | 284 |
| BstSCI | CCNGG | 4 cut(s) | 87, 88, 109, 693 |
| BstUI | CGCG | 2 cut(s) | 53, 63 |
| BstV1I | GCAGC | 1 cut(s) | 183 |
| BsuI | GTATCC | 1 cut(s) | 347 |
| BsuRI | GGCC | 1 cut(s) | 114 |
| BtsCI | GGATG | 3 cut(s) | 169, 193, 282 |
| BtsIMutI | CAGTG | 1 cut(s) | 645 |
| BveI | ACCTGC | 1 cut(s) | 116 |
| Cac8I | GCNNGC | 3 cut(s) | 81, 107, 282 |
| CaiI | CAGNNNCTG | 1 cut(s) | 22 |
| CfoI | GCGC | 2 cut(s) | 53, 63 |
| Cfr9I | CCCGGG | 1 cut(s) | 88 |
| CseI | GACGC | 2 cut(s) | 8, 163 |
| Csp6I | GTAC | 1 cut(s) | 219 |
| CviAII | CATG | 5 cut(s) | 47, 184, 273, 281, 479 |
| CviJI | RGCY | 8 cut(s) | 28, 69, 93, 105, 114, 205, 214, 634 |
| CviKI_1 | RGCY | 8 cut(s) | 28, 69, 93, 105, 114, 205, 214, 634 |
| CviQI | GTAC | 1 cut(s) | 219 |
| DpnI | GATC | 4 cut(s) | 75, 86, 429, 505 |
| DpnII | GATC | 4 cut(s) | 73, 84, 427, 503 |
| DraIII | CACNNNGTG | 3 cut(s) | 140, 235, 387 |
| EaeI | YGGCCR | 1 cut(s) | 112 |
| Eco24I | GRGCYC | 1 cut(s) | 95 |
| Eco32I | GATATC | 1 cut(s) | 250 |
| Eco88I | CYCGRG | 2 cut(s) | 88, 94 |
| EcoRII | CCWGG | 2 cut(s) | 109, 693 |
| EcoRV | GATATC | 1 cut(s) | 250 |
| EcoT22I | ATGCAT | 1 cut(s) | 282 |
| EcoT38I | GRGCYC | 1 cut(s) | 95 |
| FaeI | CATG | 5 cut(s) | 50, 187, 276, 284, 482 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 416, 448 |
| FatI | CATG | 5 cut(s) | 46, 183, 272, 280, 478 |
| FauI | CCCGC | 3 cut(s) | 72, 114, 152 |
| FauNDI | CATATG | 1 cut(s) | 244 |
| FblI | GTMKAC | 1 cut(s) | 177 |
| Fnu4HI | GCNGC | 2 cut(s) | 59, 172 |
| FokI | GGATG | 3 cut(s) | 176, 180, 289 |
| FriOI | GRGCYC | 1 cut(s) | 95 |
| Fsp4HI | GCNGC | 2 cut(s) | 59, 172 |
| GlaI | GCGC | 2 cut(s) | 52, 62 |
| GluI | GCNGC | 2 cut(s) | 59, 172 |
| GsaI | CCCAGC | 1 cut(s) | 19 |
| GsuI | CTGGAG | 1 cut(s) | 44 |
| HaeIII | GGCC | 1 cut(s) | 114 |
| HapII | CCGG | 1 cut(s) | 89 |
| HgaI | GACGC | 2 cut(s) | 8, 163 |
| HhaI | GCGC | 2 cut(s) | 53, 63 |
| Hin1II | CATG | 5 cut(s) | 50, 187, 276, 284, 482 |
| Hin6I | GCGC | 2 cut(s) | 51, 61 |
| HinP1I | GCGC | 2 cut(s) | 51, 61 |
| HincII | GTYRAC | 1 cut(s) | 669 |
| HindII | GTYRAC | 1 cut(s) | 669 |
| HinfI | GANTC | 4 cut(s) | 144, 497, 545, 551 |
| HpaII | CCGG | 1 cut(s) | 89 |
| HphI | GGTGA | 3 cut(s) | 112, 221, 629 |
| Hpy166II | GTNNAC | 2 cut(s) | 178, 669 |
| Hpy188I | TCNGA | 2 cut(s) | 33, 550 |
| Hpy188III | TCNNGA | 2 cut(s) | 23, 501 |
| Hpy8I | GTNNAC | 2 cut(s) | 178, 669 |
| HpyAV | CCTTC | 1 cut(s) | 608 |
| HpyCH4III | ACNGT | 1 cut(s) | 365 |
| HpyCH4V | TGCA | 4 cut(s) | 280, 381, 559, 701 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 25, 34, 43, 111, 211 |
| Hsp92II | CATG | 5 cut(s) | 50, 187, 276, 284, 482 |
| HspAI | GCGC | 2 cut(s) | 51, 61 |
| Kzo9I | GATC | 4 cut(s) | 73, 84, 427, 503 |
| LmnI | GCTCC | 2 cut(s) | 25, 631 |
| Lsp1109I | GCAGC | 1 cut(s) | 183 |
| LweI | GCATC | 3 cut(s) | 24, 267, 663 |
| MaeIII | GTNAC | 2 cut(s) | 118, 563 |
| MalI | GATC | 4 cut(s) | 75, 86, 429, 505 |
| MboI | GATC | 4 cut(s) | 73, 84, 427, 503 |
| MboII | GAAGA | 2 cut(s) | 271, 635 |
| MfeI | CAATTG | 1 cut(s) | 540 |
| MhlI | GDGCHC | 1 cut(s) | 95 |
| MluCI | AATT | 4 cut(s) | 530, 540, 590, 652 |
| MlyI | GAGTC | 2 cut(s) | 506, 545 |
| MmeI | TCCRAC | 1 cut(s) | 591 |
| MnlI | CCTC | 5 cut(s) | 163, 285, 478, 529, 622 |
| Mph1103I | ATGCAT | 1 cut(s) | 282 |
| MseI | TTAA | 1 cut(s) | 656 |
| MslI | CAYNNNNRTG | 1 cut(s) | 715 |
| MspI | CCGG | 1 cut(s) | 89 |
| MspR9I | CCNGG | 4 cut(s) | 89, 90, 111, 695 |
| MunI | CAATTG | 1 cut(s) | 540 |
| MvaI | CCWGG | 2 cut(s) | 111, 695 |
| MvnI | CGCG | 2 cut(s) | 53, 63 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 25, 34, 43, 111, 211 |
| NciI | CCSGG | 2 cut(s) | 89, 90 |
| NdeI | CATATG | 1 cut(s) | 244 |
| NdeII | GATC | 4 cut(s) | 73, 84, 427, 503 |
| NlaIII | CATG | 5 cut(s) | 50, 187, 276, 284, 482 |
| NmuCI | GTSAC | 1 cut(s) | 118 |
| NsiI | ATGCAT | 1 cut(s) | 282 |
| NspI | RCATGY | 1 cut(s) | 284 |
| PaeI | GCATGC | 1 cut(s) | 284 |
| PfeI | GAWTC | 2 cut(s) | 144, 545 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 22, 140 |
| PkrI | GCNGC | 2 cut(s) | 60, 173 |
| PleI | GAGTC | 2 cut(s) | 505, 545 |
| PpsI | GAGTC | 2 cut(s) | 505, 545 |
| Psp6I | CCWGG | 2 cut(s) | 109, 693 |
| PspFI | CCCAGC | 1 cut(s) | 15 |
| PspGI | CCWGG | 2 cut(s) | 109, 693 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 358, 390 |
| PstNI | CAGNNNCTG | 1 cut(s) | 22 |
| RsaI | GTAC | 1 cut(s) | 220 |
| RsaNI | GTAC | 1 cut(s) | 219 |
| RseI | CAYNNNNRTG | 1 cut(s) | 715 |
| SaqAI | TTAA | 1 cut(s) | 656 |
| SatI | GCNGC | 2 cut(s) | 59, 172 |
| Sau3AI | GATC | 4 cut(s) | 73, 84, 427, 503 |
| SchI | GAGTC | 2 cut(s) | 506, 545 |
| ScrFI | CCNGG | 4 cut(s) | 89, 90, 111, 695 |
| SduI | GDGCHC | 1 cut(s) | 95 |
| SfaNI | GCATC | 3 cut(s) | 24, 267, 663 |
| SmaI | CCCGGG | 1 cut(s) | 90 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 715 |
| SphI | GCATGC | 1 cut(s) | 284 |
| Sse9I | AATT | 4 cut(s) | 530, 540, 590, 652 |
| SsiI | CCGC | 6 cut(s) | 58, 79, 99, 107, 123, 159 |
| StyD4I | CCNGG | 4 cut(s) | 87, 88, 109, 693 |
| TaaI | ACNGT | 1 cut(s) | 365 |
| TaqI | TCGA | 2 cut(s) | 9, 147 |
| TasI | AATT | 4 cut(s) | 530, 540, 590, 652 |
| TauI | GCSGC | 1 cut(s) | 61 |
| TfiI | GAWTC | 2 cut(s) | 144, 545 |
| Tru1I | TTAA | 1 cut(s) | 656 |
| Tru9I | TTAA | 1 cut(s) | 656 |
| TscAI | CASTG | 1 cut(s) | 645 |
| TseFI | GTSAC | 1 cut(s) | 118 |
| TseI | GCWGC | 1 cut(s) | 171 |
| Tsp45I | GTSAC | 1 cut(s) | 118 |
| TspDTI | ATGAA | 5 cut(s) | 172, 215, 597, 636, 665 |
| TspGWI | ACGGA | 1 cut(s) | 527 |
| TspMI | CCCGGG | 1 cut(s) | 88 |
| TspRI | CASTG | 1 cut(s) | 645 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 22, 140 |
| XapI | RAATTY | 1 cut(s) | 652 |
| XceI | RCATGY | 1 cut(s) | 284 |
| XmaI | CCCGGG | 1 cut(s) | 88 |
| XmiI | GTMKAC | 1 cut(s) | 177 |
| Zsp2I | ATGCAT | 1 cut(s) | 282 |