No description available
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transposase_21 | PF02992 | 138 - 184 | 1.8e-15 | Transposase family tnp2 |
| Transposase_21 | PF02992 | 187 - 309 | 2.2e-34 | Transposase family tnp2 |
| DUF4218 | PF13960 | 331 - 369 | 3.3e-09 | Domain of unknown function (DUF4218) |
| DUF4216 | PF13952 | 531 - 601 | 5.9e-19 | Domain of unknown function (DUF4216) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1071 |
| Acc65I | GGTACC | 1 cut(s) | 677 |
| AccB1I | GGYRCC | 1 cut(s) | 677 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 894, 1585 |
| AccBSI | CCGCTC | 2 cut(s) | 340, 1835 |
| AccII | CGCG | 2 cut(s) | 1037, 1790 |
| AccIII | TCCGGA | 1 cut(s) | 486 |
| AciI | CCGC | 9 cut(s) | 340, 838, 971, 1035, 1124, 1362, 1549, 1655, 1835 |
| AclI | AACGTT | 1 cut(s) | 720 |
| AclWI | GGATC | 3 cut(s) | 157, 200, 1988 |
| AcoI | YGGCCR | 1 cut(s) | 363 |
| AcsI | RAATTY | 5 cut(s) | 599, 909, 1194, 1522, 1959 |
| AcuI | CTGAAG | 2 cut(s) | 1062, 1077 |
| AdeI | CACNNNGTG | 1 cut(s) | 1544 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 325, 431, 701, 894, 1248, 1249, 1339, 1585, 1780 |
| AflIII | ACRYGT | 2 cut(s) | 348, 1788 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1584, 1616 |
| AluBI | AGCT | 7 cut(s) | 47, 271, 371, 595, 946, 1055, 1231 |
| AluI | AGCT | 7 cut(s) | 47, 271, 371, 595, 946, 1055, 1231 |
| Alw21I | GWGCWC | 2 cut(s) | 1623, 1815 |
| Alw26I | GTCTC | 6 cut(s) | 20, 566, 571, 999, 1174, 1494 |
| Alw44I | GTGCAC | 2 cut(s) | 1619, 1811 |
| AlwI | GGATC | 3 cut(s) | 157, 200, 1988 |
| Ama87I | CYCGRG | 2 cut(s) | 500, 1325 |
| Aor13HI | TCCGGA | 1 cut(s) | 486 |
| AoxI | GGCC | 4 cut(s) | 229, 363, 1652, 1851 |
| ApaLI | GTGCAC | 2 cut(s) | 1619, 1811 |
| ApeKI | GCWGC | 3 cut(s) | 82, 771, 943 |
| ApoI | RAATTY | 5 cut(s) | 599, 909, 1194, 1522, 1959 |
| AseI | ATTAAT | 2 cut(s) | 1260, 2055 |
| Asp718I | GGTACC | 1 cut(s) | 677 |
| AspLEI | GCGC | 2 cut(s) | 1039, 1072 |
| AspS9I | GGNCC | 3 cut(s) | 121, 484, 864 |
| AsuHPI | GGTGA | 6 cut(s) | 1075, 1331, 1385, 1480, 1705, 1796 |
| AsuII | TTCGAA | 1 cut(s) | 443 |
| AvaI | CYCGRG | 2 cut(s) | 500, 1325 |
| AvaII | GGWCC | 3 cut(s) | 121, 484, 864 |
| BaeGI | GKGCMC | 2 cut(s) | 1623, 1815 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 296, 329 |
| BanI | GGYRCC | 1 cut(s) | 677 |
| BanII | GRGCYC | 2 cut(s) | 507, 1890 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 291, 323 |
| BauI | CACGAG | 2 cut(s) | 644, 1073 |
| BbsI | GAAGAC | 6 cut(s) | 92, 345, 536, 1673, 2022, 2079 |
| Bbv12I | GWGCWC | 2 cut(s) | 1623, 1815 |
| BbvI | GCAGC | 3 cut(s) | 69, 783, 955 |
| BccI | CCATC | 7 cut(s) | 372, 689, 854, 888, 1302, 1382, 1632 |
| BceAI | ACGGC | 1 cut(s) | 378 |
| BciVI | GTATCC | 2 cut(s) | 140, 725 |
| BclI | TGATCA | 1 cut(s) | 826 |
| BcoDI | GTCTC | 6 cut(s) | 20, 566, 571, 999, 1174, 1494 |
| BfaI | CTAG | 3 cut(s) | 1232, 1424, 1650 |
| BfmI | CTRYAG | 2 cut(s) | 62, 279 |
| BfuI | GTATCC | 2 cut(s) | 140, 725 |
| BglII | AGATCT | 1 cut(s) | 139 |
| BisI | GCNGC | 8 cut(s) | 83, 772, 839, 944, 972, 1363, 1655, 1836 |
| BlpI | GCTNAGC | 1 cut(s) | 947 |
| BlsI | GCNGC | 8 cut(s) | 84, 773, 840, 945, 973, 1364, 1656, 1837 |
| Bme18I | GGWCC | 3 cut(s) | 121, 484, 864 |
| BmeT110I | CYCGRG | 2 cut(s) | 500, 1325 |
| BmgT120I | GGNCC | 3 cut(s) | 121, 484, 864 |
| BmiI | GGNNCC | 2 cut(s) | 679, 865 |
| BmsI | GCATC | 3 cut(s) | 69, 648, 835 |
| BoxI | GACNNNNGTC | 2 cut(s) | 240, 615 |
| BpiI | GAAGAC | 6 cut(s) | 92, 345, 536, 1673, 2022, 2079 |
| BpmI | CTGGAG | 1 cut(s) | 1156 |
| Bpu10I | CCTNAGC | 2 cut(s) | 755, 1779 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 947 |
| Bpu14I | TTCGAA | 1 cut(s) | 443 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1992, 1998 |
| BsaI | GGTCTC | 1 cut(s) | 571 |
| BsaJI | CCNNGG | 4 cut(s) | 223, 700, 1148, 1976 |
| BsaWI | WCCGGW | 2 cut(s) | 244, 486 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 329, 359, 760, 790 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 325, 431, 701, 894, 1248, 1249, 1339, 1585, 1780 |
| Bse118I | RCCGGY | 1 cut(s) | 1135 |
| Bse1I | ACTGG | 3 cut(s) | 1173, 1250, 1286 |
| Bse3DI | GCAATG | 2 cut(s) | 778, 1236 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1992, 1998 |
| BseAI | TCCGGA | 1 cut(s) | 486 |
| BseDI | CCNNGG | 4 cut(s) | 223, 700, 1148, 1976 |
| BseGI | GGATG | 7 cut(s) | 509, 619, 711, 955, 1052, 1290, 1374 |
| BseJI | GATNNNNATC | 2 cut(s) | 1992, 1998 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 325, 431, 701, 894, 1248, 1249, 1339, 1585, 1780 |
| BseMI | GCAATG | 2 cut(s) | 778, 1236 |
| BseMII | CTCAG | 1 cut(s) | 961 |
| BseNI | ACTGG | 3 cut(s) | 1173, 1250, 1286 |
| BseRI | GAGGAG | 1 cut(s) | 1903 |
| BseSI | GKGCMC | 2 cut(s) | 1623, 1815 |
| BseX3I | CGGCCG | 1 cut(s) | 363 |
| BseXI | GCAGC | 3 cut(s) | 69, 783, 955 |
| Bsh1236I | CGCG | 2 cut(s) | 1037, 1790 |
| Bsh1285I | CGRYCG | 1 cut(s) | 366 |
| BshFI | GGCC | 4 cut(s) | 231, 365, 1654, 1853 |
| BshNI | GGYRCC | 1 cut(s) | 677 |
| BsiEI | CGRYCG | 1 cut(s) | 366 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1623, 1815 |
| BsiHKCI | CYCGRG | 2 cut(s) | 500, 1325 |
| BsiSI | CCGG | 3 cut(s) | 245, 487, 1136 |
| BslFI | GGGAC | 2 cut(s) | 623, 877 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 325, 431, 701, 894, 1248, 1249, 1339, 1585, 1780 |
| BsmAI | GTCTC | 6 cut(s) | 20, 566, 571, 999, 1174, 1494 |
| BsmFI | GGGAC | 2 cut(s) | 623, 877 |
| BsnI | GGCC | 4 cut(s) | 231, 365, 1654, 1853 |
| Bso31I | GGTCTC | 1 cut(s) | 571 |
| BsoBI | CYCGRG | 2 cut(s) | 500, 1325 |
| Bsp119I | TTCGAA | 1 cut(s) | 443 |
| Bsp1286I | GDGCHC | 4 cut(s) | 507, 1623, 1815, 1890 |
| Bsp13I | TCCGGA | 1 cut(s) | 486 |
| Bsp1407I | TGTACA | 1 cut(s) | 345 |
| Bsp143I | GATC | 7 cut(s) | 139, 162, 205, 826, 1321, 1672, 1993 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 947 |
| BspACI | CCGC | 9 cut(s) | 340, 838, 971, 1035, 1124, 1362, 1549, 1655, 1835 |
| BspANI | GGCC | 4 cut(s) | 231, 365, 1654, 1853 |
| BspCNI | CTCAG | 1 cut(s) | 960 |
| BspEI | TCCGGA | 1 cut(s) | 486 |
| BspFNI | CGCG | 2 cut(s) | 1037, 1790 |
| BspLI | GGNNCC | 2 cut(s) | 679, 865 |
| BspMAI | CTGCAG | 1 cut(s) | 283 |
| BspPI | GGATC | 3 cut(s) | 157, 200, 1988 |
| BspQI | GCTCTTC | 2 cut(s) | 585, 1965 |
| BspT104I | TTCGAA | 1 cut(s) | 443 |
| BspT107I | GGYRCC | 1 cut(s) | 677 |
| BspTNI | GGTCTC | 1 cut(s) | 571 |
| BsrBI | CCGCTC | 2 cut(s) | 340, 1835 |
| BsrDI | GCAATG | 2 cut(s) | 778, 1236 |
| BsrFI | RCCGGY | 1 cut(s) | 1135 |
| BsrGI | TGTACA | 1 cut(s) | 345 |
| BsrI | ACTGG | 3 cut(s) | 1173, 1250, 1286 |
| BssAI | RCCGGY | 1 cut(s) | 1135 |
| BssECI | CCNNGG | 4 cut(s) | 223, 700, 1148, 1976 |
| BssMI | GATC | 7 cut(s) | 139, 162, 205, 826, 1321, 1672, 1993 |
| BssSI | CACGAG | 2 cut(s) | 644, 1073 |
| BssT1I | CCWWGG | 2 cut(s) | 223, 1976 |
| Bst2BI | CACGAG | 2 cut(s) | 644, 1073 |
| Bst4CI | ACNGT | 8 cut(s) | 40, 66, 92, 809, 878, 1571, 1618, 1921 |
| Bst6I | CTCTTC | 3 cut(s) | 585, 1631, 1965 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 780, 1067, 1132 |
| BstAUI | TGTACA | 1 cut(s) | 345 |
| BstBI | TTCGAA | 1 cut(s) | 443 |
| BstC8I | GCNNGC | 4 cut(s) | 172, 283, 384, 1478 |
| BstDEI | CTNAG | 6 cut(s) | 755, 947, 1415, 1527, 1779, 2103 |
| BstDSI | CCRYGG | 1 cut(s) | 700 |
| BstEII | GGTNACC | 1 cut(s) | 1391 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1778 |
| BstF5I | GGATG | 7 cut(s) | 509, 619, 711, 955, 1052, 1290, 1374 |
| BstFNI | CGCG | 2 cut(s) | 1037, 1790 |
| BstHHI | GCGC | 2 cut(s) | 1039, 1072 |
| BstKTI | GATC | 7 cut(s) | 142, 165, 208, 829, 1324, 1675, 1996 |
| BstMAI | GTCTC | 6 cut(s) | 20, 566, 571, 999, 1174, 1494 |
| BstMBI | GATC | 7 cut(s) | 139, 162, 205, 826, 1321, 1672, 1993 |
| BstMCI | CGRYCG | 1 cut(s) | 366 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 780, 1067, 1132 |
| BstNSI | RCATGY | 4 cut(s) | 174, 243, 352, 665 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 240, 615 |
| BstPI | GGTNACC | 1 cut(s) | 1391 |
| BstSFI | CTRYAG | 2 cut(s) | 62, 279 |
| BstSLI | GKGCMC | 2 cut(s) | 1623, 1815 |
| BstUI | CGCG | 2 cut(s) | 1037, 1790 |
| BstV1I | GCAGC | 3 cut(s) | 69, 783, 955 |
| BstV2I | GAAGAC | 6 cut(s) | 92, 345, 536, 1673, 2022, 2079 |
| BstX2I | RGATCY | 3 cut(s) | 139, 162, 205 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 967 |
| BstYI | RGATCY | 3 cut(s) | 139, 162, 205 |
| BstZI | CGGCCG | 1 cut(s) | 363 |
| BsuI | GTATCC | 2 cut(s) | 140, 725 |
| BsuRI | GGCC | 4 cut(s) | 231, 365, 1654, 1853 |
| BtgI | CCRYGG | 1 cut(s) | 700 |
| BtgZI | GCGATG | 3 cut(s) | 774, 1442, 2040 |
| BtsCI | GGATG | 7 cut(s) | 509, 619, 711, 955, 1052, 1290, 1374 |
| BtsI | GCAGTG | 3 cut(s) | 69, 924, 1698 |
| Cac8I | GCNNGC | 4 cut(s) | 172, 283, 384, 1478 |
| CfoI | GCGC | 2 cut(s) | 1039, 1072 |
| Cfr10I | RCCGGY | 1 cut(s) | 1135 |
| Cfr13I | GGNCC | 3 cut(s) | 121, 484, 864 |
| CseI | GACGC | 4 cut(s) | 245, 465, 1069, 1796 |
| DdeI | CTNAG | 6 cut(s) | 755, 947, 1415, 1527, 1779, 2103 |
| DpnI | GATC | 7 cut(s) | 141, 164, 207, 828, 1323, 1674, 1995 |
| DpnII | GATC | 7 cut(s) | 139, 162, 205, 826, 1321, 1672, 1993 |
| DraI | TTTAAA | 1 cut(s) | 1939 |
| DraIII | CACNNNGTG | 1 cut(s) | 1544 |
| EaeI | YGGCCR | 1 cut(s) | 363 |
| EagI | CGGCCG | 1 cut(s) | 363 |
| Eam1104I | CTCTTC | 3 cut(s) | 585, 1631, 1965 |
| EarI | CTCTTC | 3 cut(s) | 585, 1631, 1965 |
| EciI | GGCGGA | 1 cut(s) | 1564 |
| EclXI | CGGCCG | 1 cut(s) | 363 |
| Eco130I | CCWWGG | 2 cut(s) | 223, 1976 |
| Eco24I | GRGCYC | 2 cut(s) | 507, 1890 |
| Eco31I | GGTCTC | 1 cut(s) | 571 |
| Eco47I | GGWCC | 3 cut(s) | 121, 484, 864 |
| Eco52I | CGGCCG | 1 cut(s) | 363 |
| Eco57I | CTGAAG | 2 cut(s) | 1062, 1077 |
| Eco88I | CYCGRG | 2 cut(s) | 500, 1325 |
| Eco91I | GGTNACC | 1 cut(s) | 1391 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1778 |
| EcoO65I | GGTNACC | 1 cut(s) | 1391 |
| EcoRI | GAATTC | 2 cut(s) | 1522, 1959 |
| EcoT14I | CCWWGG | 2 cut(s) | 223, 1976 |
| EcoT22I | ATGCAT | 2 cut(s) | 172, 663 |
| EcoT38I | GRGCYC | 2 cut(s) | 507, 1890 |
| ErhI | CCWWGG | 2 cut(s) | 223, 1976 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 399, 431 |
| FaqI | GGGAC | 2 cut(s) | 623, 877 |
| FauNDI | CATATG | 1 cut(s) | 823 |
| FbaI | TGATCA | 1 cut(s) | 826 |
| Fnu4HI | GCNGC | 8 cut(s) | 83, 772, 839, 944, 972, 1363, 1655, 1836 |
| FokI | GGATG | 7 cut(s) | 496, 606, 718, 942, 1059, 1277, 1381 |
| FriOI | GRGCYC | 2 cut(s) | 507, 1890 |
| Fsp4HI | GCNGC | 8 cut(s) | 83, 772, 839, 944, 972, 1363, 1655, 1836 |
| FspBI | CTAG | 3 cut(s) | 1232, 1424, 1650 |
| FspI | TGCGCA | 1 cut(s) | 1071 |
| GlaI | GCGC | 2 cut(s) | 1038, 1071 |
| GluI | GCNGC | 8 cut(s) | 83, 772, 839, 944, 972, 1363, 1655, 1836 |
| GsuI | CTGGAG | 1 cut(s) | 1156 |
| HaeIII | GGCC | 4 cut(s) | 231, 365, 1654, 1853 |
| HapII | CCGG | 3 cut(s) | 245, 487, 1136 |
| HgaI | GACGC | 4 cut(s) | 245, 465, 1069, 1796 |
| HhaI | GCGC | 2 cut(s) | 1039, 1072 |
| Hin6I | GCGC | 2 cut(s) | 1037, 1070 |
| HinP1I | GCGC | 2 cut(s) | 1037, 1070 |
| HincII | GTYRAC | 2 cut(s) | 1561, 1804 |
| HindII | GTYRAC | 2 cut(s) | 1561, 1804 |
| HinfI | GANTC | 5 cut(s) | 274, 541, 1205, 2018, 2075 |
| HpaII | CCGG | 3 cut(s) | 245, 487, 1136 |
| HphI | GGTGA | 6 cut(s) | 1075, 1331, 1385, 1480, 1705, 1796 |
| Hpy166II | GTNNAC | 7 cut(s) | 69, 639, 1561, 1621, 1696, 1804, 1813 |
| Hpy188I | TCNGA | 7 cut(s) | 125, 481, 514, 1458, 2062, 2083, 2092 |
| Hpy8I | GTNNAC | 7 cut(s) | 69, 639, 1561, 1621, 1696, 1804, 1813 |
| Hpy99I | CGWCG | 1 cut(s) | 518 |
| HpyAV | CCTTC | 5 cut(s) | 206, 827, 1037, 1108, 1503 |
| HpyCH4III | ACNGT | 8 cut(s) | 40, 66, 92, 809, 878, 1571, 1618, 1921 |
| HpyCH4IV | ACGT | 3 cut(s) | 6, 612, 720 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 780, 1067, 1132 |
| HpyF3I | CTNAG | 6 cut(s) | 755, 947, 1415, 1527, 1779, 2103 |
| HpySE526I | ACGT | 3 cut(s) | 6, 612, 720 |
| HspAI | GCGC | 2 cut(s) | 1037, 1070 |
| Kpn2I | TCCGGA | 1 cut(s) | 486 |
| KpnI | GGTACC | 1 cut(s) | 681 |
| Ksp22I | TGATCA | 1 cut(s) | 826 |
| Kzo9I | GATC | 7 cut(s) | 139, 162, 205, 826, 1321, 1672, 1993 |
| LguI | GCTCTTC | 2 cut(s) | 585, 1965 |
| LmnI | GCTCC | 2 cut(s) | 337, 768 |
| Lsp1109I | GCAGC | 3 cut(s) | 69, 783, 955 |
| LweI | GCATC | 3 cut(s) | 69, 648, 835 |
| MaeI | CTAG | 3 cut(s) | 1232, 1424, 1650 |
| MaeII | ACGT | 3 cut(s) | 6, 612, 720 |
| MaeIII | GTNAC | 5 cut(s) | 251, 803, 1081, 1391, 1784 |
| MalI | GATC | 7 cut(s) | 141, 164, 207, 828, 1323, 1674, 1995 |
| MbiI | CCGCTC | 2 cut(s) | 340, 1835 |
| MboI | GATC | 7 cut(s) | 139, 162, 205, 826, 1321, 1672, 1993 |
| MflI | RGATCY | 3 cut(s) | 139, 162, 205 |
| MhlI | GDGCHC | 4 cut(s) | 507, 1623, 1815, 1890 |
| MluI | ACGCGT | 1 cut(s) | 1788 |
| MlyI | GAGTC | 5 cut(s) | 268, 550, 1199, 2012, 2069 |
| MmeI | TCCRAC | 2 cut(s) | 315, 537 |
| Mph1103I | ATGCAT | 2 cut(s) | 172, 663 |
| MroI | TCCGGA | 1 cut(s) | 486 |
| MseI | TTAA | 8 cut(s) | 18, 51, 597, 924, 1260, 1929, 1938, 2055 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1088, 1616 |
| MspI | CCGG | 3 cut(s) | 245, 487, 1136 |
| MvnI | CGCG | 2 cut(s) | 1037, 1790 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 780, 1067, 1132 |
| NdeI | CATATG | 1 cut(s) | 823 |
| NdeII | GATC | 7 cut(s) | 139, 162, 205, 826, 1321, 1672, 1993 |
| NlaIV | GGNNCC | 2 cut(s) | 679, 865 |
| NmuCI | GTSAC | 5 cut(s) | 251, 803, 1081, 1391, 1784 |
| NsbI | TGCGCA | 1 cut(s) | 1071 |
| NsiI | ATGCAT | 2 cut(s) | 172, 663 |
| NspI | RCATGY | 4 cut(s) | 174, 243, 352, 665 |
| NspV | TTCGAA | 1 cut(s) | 443 |
| PaeI | GCATGC | 1 cut(s) | 174 |
| PaeR7I | CTCGAG | 1 cut(s) | 1325 |
| PciI | ACATGT | 1 cut(s) | 348 |
| PciSI | GCTCTTC | 2 cut(s) | 585, 1965 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1954 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 894, 1585 |
| PkrI | GCNGC | 8 cut(s) | 84, 773, 840, 945, 973, 1364, 1656, 1837 |
| PleI | GAGTC | 5 cut(s) | 268, 549, 1199, 2012, 2069 |
| PpsI | GAGTC | 5 cut(s) | 268, 549, 1199, 2012, 2069 |
| PscI | ACATGT | 1 cut(s) | 348 |
| PshAI | GACNNNNGTC | 2 cut(s) | 240, 615 |
| PshBI | ATTAAT | 2 cut(s) | 1260, 2055 |
| Psp1406I | AACGTT | 1 cut(s) | 720 |
| PspEI | GGTNACC | 1 cut(s) | 1391 |
| PspN4I | GGNNCC | 2 cut(s) | 679, 865 |
| PspPI | GGNCC | 3 cut(s) | 121, 484, 864 |
| PstI | CTGCAG | 1 cut(s) | 283 |
| PsuI | RGATCY | 3 cut(s) | 139, 162, 205 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1088, 1616 |
| SapI | GCTCTTC | 2 cut(s) | 585, 1965 |
| SaqAI | TTAA | 8 cut(s) | 18, 51, 597, 924, 1260, 1929, 1938, 2055 |
| SatI | GCNGC | 8 cut(s) | 83, 772, 839, 944, 972, 1363, 1655, 1836 |
| Sau3AI | GATC | 7 cut(s) | 139, 162, 205, 826, 1321, 1672, 1993 |
| Sau96I | GGNCC | 3 cut(s) | 121, 484, 864 |
| SbfI | CCTGCAGG | 1 cut(s) | 283 |
| SchI | GAGTC | 5 cut(s) | 268, 550, 1199, 2012, 2069 |
| SdaI | CCTGCAGG | 1 cut(s) | 283 |
| SduI | GDGCHC | 4 cut(s) | 507, 1623, 1815, 1890 |
| SfaNI | GCATC | 3 cut(s) | 69, 648, 835 |
| SfcI | CTRYAG | 2 cut(s) | 62, 279 |
| Sfr274I | CTCGAG | 1 cut(s) | 1325 |
| SfuI | TTCGAA | 1 cut(s) | 443 |
| SinI | GGWCC | 3 cut(s) | 121, 484, 864 |
| SlaI | CTCGAG | 1 cut(s) | 1325 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1088, 1616 |
| SmlI | CTYRAG | 1 cut(s) | 1325 |
| SmoI | CTYRAG | 1 cut(s) | 1325 |
| SphI | GCATGC | 1 cut(s) | 174 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 283 |
| SsiI | CCGC | 9 cut(s) | 340, 838, 971, 1035, 1124, 1362, 1549, 1655, 1835 |
| SspI | AATATT | 1 cut(s) | 1686 |
| SspMI | CTAG | 3 cut(s) | 1232, 1424, 1650 |
| StyI | CCWWGG | 2 cut(s) | 223, 1976 |
| TaaI | ACNGT | 8 cut(s) | 40, 66, 92, 809, 878, 1571, 1618, 1921 |
| TaiI | ACGT | 3 cut(s) | 9, 615, 723 |
| TaqI | TCGA | 7 cut(s) | 35, 77, 443, 564, 843, 1326, 1819 |
| TaqII | GACCGA | 1 cut(s) | 1685 |
| TatI | WGTACW | 4 cut(s) | 66, 345, 636, 809 |
| TauI | GCSGC | 5 cut(s) | 841, 974, 1365, 1657, 1838 |
| Tru1I | TTAA | 8 cut(s) | 18, 51, 597, 924, 1260, 1929, 1938, 2055 |
| Tru9I | TTAA | 8 cut(s) | 18, 51, 597, 924, 1260, 1929, 1938, 2055 |
| TseFI | GTSAC | 5 cut(s) | 251, 803, 1081, 1391, 1784 |
| TseI | GCWGC | 3 cut(s) | 82, 771, 943 |
| Tsp45I | GTSAC | 5 cut(s) | 251, 803, 1081, 1391, 1784 |
| TspDTI | ATGAA | 6 cut(s) | 26, 1106, 1385, 1445, 1679, 1983 |
| TspGWI | ACGGA | 1 cut(s) | 1695 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 894, 1585 |
| VneI | GTGCAC | 2 cut(s) | 1619, 1811 |
| VpaK11BI | GGWCC | 3 cut(s) | 121, 484, 864 |
| VspI | ATTAAT | 2 cut(s) | 1260, 2055 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1778 |
| XapI | RAATTY | 5 cut(s) | 599, 909, 1194, 1522, 1959 |
| XceI | RCATGY | 4 cut(s) | 174, 243, 352, 665 |
| XhoI | CTCGAG | 1 cut(s) | 1325 |
| XspI | CTAG | 3 cut(s) | 1232, 1424, 1650 |
| Zsp2I | ATGCAT | 2 cut(s) | 172, 663 |