Transposase-associated domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 185, 198, 392 |
| AfaI | GTAC | 1 cut(s) | 103 |
| AflIII | ACRYGT | 1 cut(s) | 416 |
| AgsI | TTSAA | 2 cut(s) | 98, 433 |
| AjnI | CCWGG | 2 cut(s) | 212, 435 |
| AluBI | AGCT | 1 cut(s) | 242 |
| AluI | AGCT | 1 cut(s) | 242 |
| AlwI | GGATC | 3 cut(s) | 185, 198, 392 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 326 |
| AoxI | GGCC | 1 cut(s) | 266 |
| ApeKI | GCWGC | 2 cut(s) | 166, 242 |
| AspS9I | GGNCC | 3 cut(s) | 216, 266, 302 |
| AsuC2I | CCSGG | 1 cut(s) | 300 |
| AsuHPI | GGTGA | 2 cut(s) | 239, 383 |
| AvaII | GGWCC | 2 cut(s) | 216, 302 |
| BamHI | GGATCC | 1 cut(s) | 190 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 366, 398 |
| BauI | CACGAG | 1 cut(s) | 442 |
| BbvI | GCAGC | 2 cut(s) | 178, 229 |
| BccI | CCATC | 3 cut(s) | 176, 313, 400 |
| BciT130I | CCWGG | 2 cut(s) | 214, 437 |
| BclI | TGATCA | 1 cut(s) | 250 |
| BcnI | CCSGG | 1 cut(s) | 300 |
| BfmI | CTRYAG | 1 cut(s) | 243 |
| BisI | GCNGC | 2 cut(s) | 167, 243 |
| BlsI | GCNGC | 2 cut(s) | 168, 244 |
| Bme1390I | CCNGG | 3 cut(s) | 214, 300, 437 |
| Bme18I | GGWCC | 2 cut(s) | 216, 302 |
| BmgT120I | GGNCC | 3 cut(s) | 216, 266, 302 |
| BmiI | GGNNCC | 2 cut(s) | 192, 303 |
| BmrFI | CCNGG | 3 cut(s) | 214, 300, 437 |
| BmsI | GCATC | 3 cut(s) | 49, 178, 340 |
| BoxI | GACNNNNGTC | 1 cut(s) | 307 |
| BpuMI | CCSGG | 1 cut(s) | 300 |
| BsaJI | CCNNGG | 1 cut(s) | 212 |
| BseBI | CCWGG | 2 cut(s) | 214, 437 |
| BseDI | CCNNGG | 1 cut(s) | 212 |
| BseGI | GGATG | 2 cut(s) | 187, 207 |
| BseXI | GCAGC | 2 cut(s) | 178, 229 |
| BshFI | GGCC | 1 cut(s) | 268 |
| BsiSI | CCGG | 1 cut(s) | 299 |
| BslFI | GGGAC | 1 cut(s) | 315 |
| BsmFI | GGGAC | 1 cut(s) | 315 |
| BsmI | GAATGC | 1 cut(s) | 62 |
| BsnI | GGCC | 1 cut(s) | 268 |
| Bsp143I | GATC | 3 cut(s) | 190, 250, 397 |
| BspANI | GGCC | 1 cut(s) | 268 |
| BspLI | GGNNCC | 2 cut(s) | 192, 303 |
| BspMAI | CTGCAG | 1 cut(s) | 247 |
| BspPI | GGATC | 3 cut(s) | 185, 198, 392 |
| BssECI | CCNNGG | 1 cut(s) | 212 |
| BssMI | GATC | 3 cut(s) | 190, 250, 397 |
| BssSI | CACGAG | 1 cut(s) | 442 |
| Bst2BI | CACGAG | 1 cut(s) | 442 |
| Bst2UI | CCWGG | 2 cut(s) | 214, 437 |
| BstC8I | GCNNGC | 2 cut(s) | 87, 153 |
| BstDEI | CTNAG | 2 cut(s) | 79, 173 |
| BstF5I | GGATG | 2 cut(s) | 187, 207 |
| BstKTI | GATC | 3 cut(s) | 193, 253, 400 |
| BstMBI | GATC | 3 cut(s) | 190, 250, 397 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 229 |
| BstNI | CCWGG | 2 cut(s) | 214, 437 |
| BstNSI | RCATGY | 3 cut(s) | 89, 364, 420 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 307 |
| BstSCI | CCNGG | 3 cut(s) | 212, 298, 435 |
| BstSFI | CTRYAG | 1 cut(s) | 243 |
| BstV1I | GCAGC | 2 cut(s) | 178, 229 |
| BstX2I | RGATCY | 2 cut(s) | 190, 397 |
| BstYI | RGATCY | 2 cut(s) | 190, 397 |
| BsuRI | GGCC | 1 cut(s) | 268 |
| BtsCI | GGATG | 2 cut(s) | 187, 207 |
| BtsIMutI | CAGTG | 1 cut(s) | 33 |
| Cac8I | GCNNGC | 2 cut(s) | 87, 153 |
| CaiI | CAGNNNCTG | 1 cut(s) | 326 |
| Cfr13I | GGNCC | 3 cut(s) | 216, 266, 302 |
| Csp6I | GTAC | 1 cut(s) | 102 |
| CviAII | CATG | 6 cut(s) | 86, 117, 187, 224, 361, 417 |
| CviJI | RGCY | 3 cut(s) | 138, 242, 268 |
| CviKI_1 | RGCY | 3 cut(s) | 138, 242, 268 |
| CviQI | GTAC | 1 cut(s) | 102 |
| DdeI | CTNAG | 2 cut(s) | 79, 173 |
| DpnI | GATC | 3 cut(s) | 192, 252, 399 |
| DpnII | GATC | 3 cut(s) | 190, 250, 397 |
| Eco47I | GGWCC | 2 cut(s) | 216, 302 |
| EcoO109I | RGGNCCY | 1 cut(s) | 266 |
| EcoRII | CCWGG | 2 cut(s) | 212, 435 |
| EcoT22I | ATGCAT | 2 cut(s) | 64, 355 |
| FaeI | CATG | 6 cut(s) | 89, 120, 190, 227, 364, 420 |
| FaqI | GGGAC | 1 cut(s) | 315 |
| FatI | CATG | 6 cut(s) | 85, 116, 186, 223, 360, 416 |
| FbaI | TGATCA | 1 cut(s) | 250 |
| Fnu4HI | GCNGC | 2 cut(s) | 167, 243 |
| FokI | GGATG | 2 cut(s) | 194, 194 |
| Fsp4HI | GCNGC | 2 cut(s) | 167, 243 |
| GluI | GCNGC | 2 cut(s) | 167, 243 |
| HaeIII | GGCC | 1 cut(s) | 268 |
| HapII | CCGG | 1 cut(s) | 299 |
| Hin1II | CATG | 6 cut(s) | 89, 120, 190, 227, 364, 420 |
| HincII | GTYRAC | 1 cut(s) | 205 |
| HindII | GTYRAC | 1 cut(s) | 205 |
| HinfI | GANTC | 1 cut(s) | 323 |
| HpaI | GTTAAC | 1 cut(s) | 205 |
| HpaII | CCGG | 1 cut(s) | 299 |
| HphI | GGTGA | 2 cut(s) | 239, 383 |
| Hpy166II | GTNNAC | 2 cut(s) | 205, 449 |
| Hpy188I | TCNGA | 2 cut(s) | 328, 397 |
| Hpy8I | GTNNAC | 2 cut(s) | 205, 449 |
| HpyAV | CCTTC | 4 cut(s) | 92, 279, 362, 411 |
| HpyCH4V | TGCA | 6 cut(s) | 62, 245, 334, 346, 353, 408 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 229 |
| HpyF3I | CTNAG | 2 cut(s) | 79, 173 |
| Hsp92II | CATG | 6 cut(s) | 89, 120, 190, 227, 364, 420 |
| Ksp22I | TGATCA | 1 cut(s) | 250 |
| KspAI | GTTAAC | 1 cut(s) | 205 |
| Kzo9I | GATC | 3 cut(s) | 190, 250, 397 |
| Lsp1109I | GCAGC | 2 cut(s) | 178, 229 |
| LweI | GCATC | 3 cut(s) | 49, 178, 340 |
| MaeIII | GTNAC | 1 cut(s) | 309 |
| MalI | GATC | 3 cut(s) | 192, 252, 399 |
| MboI | GATC | 3 cut(s) | 190, 250, 397 |
| MboII | GAAGA | 1 cut(s) | 386 |
| MflI | RGATCY | 2 cut(s) | 190, 397 |
| MluCI | AATT | 3 cut(s) | 70, 292, 428 |
| MnlI | CCTC | 1 cut(s) | 77 |
| Mph1103I | ATGCAT | 2 cut(s) | 64, 355 |
| MseI | TTAA | 2 cut(s) | 204, 291 |
| MslI | CAYNNNNRTG | 2 cut(s) | 36, 415 |
| MspA1I | CMGCKG | 1 cut(s) | 242 |
| MspI | CCGG | 1 cut(s) | 299 |
| MspR9I | CCNGG | 3 cut(s) | 214, 300, 437 |
| Mva1269I | GAATGC | 1 cut(s) | 62 |
| MvaI | CCWGG | 2 cut(s) | 214, 437 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 229 |
| NciI | CCSGG | 1 cut(s) | 300 |
| NdeII | GATC | 3 cut(s) | 190, 250, 397 |
| NlaIII | CATG | 6 cut(s) | 89, 120, 190, 227, 364, 420 |
| NlaIV | GGNNCC | 2 cut(s) | 192, 303 |
| NmuCI | GTSAC | 1 cut(s) | 309 |
| NsiI | ATGCAT | 2 cut(s) | 64, 355 |
| NspI | RCATGY | 3 cut(s) | 89, 364, 420 |
| PaeI | GCATGC | 1 cut(s) | 89 |
| PciI | ACATGT | 1 cut(s) | 416 |
| PctI | GAATGC | 1 cut(s) | 62 |
| PfeI | GAWTC | 1 cut(s) | 323 |
| PkrI | GCNGC | 2 cut(s) | 168, 244 |
| PscI | ACATGT | 1 cut(s) | 416 |
| PshAI | GACNNNNGTC | 1 cut(s) | 307 |
| Psp6I | CCWGG | 2 cut(s) | 212, 435 |
| PspGI | CCWGG | 2 cut(s) | 212, 435 |
| PspN4I | GGNNCC | 2 cut(s) | 192, 303 |
| PspPI | GGNCC | 3 cut(s) | 216, 266, 302 |
| PstI | CTGCAG | 1 cut(s) | 247 |
| PstNI | CAGNNNCTG | 1 cut(s) | 326 |
| PsuI | RGATCY | 2 cut(s) | 190, 397 |
| PvuII | CAGCTG | 1 cut(s) | 242 |
| RsaI | GTAC | 1 cut(s) | 103 |
| RsaNI | GTAC | 1 cut(s) | 102 |
| RseI | CAYNNNNRTG | 2 cut(s) | 36, 415 |
| SaqAI | TTAA | 2 cut(s) | 204, 291 |
| SatI | GCNGC | 2 cut(s) | 167, 243 |
| Sau3AI | GATC | 3 cut(s) | 190, 250, 397 |
| Sau96I | GGNCC | 3 cut(s) | 216, 266, 302 |
| ScrFI | CCNGG | 3 cut(s) | 214, 300, 437 |
| SetI | ASST | 4 cut(s) | 103, 128, 244, 373 |
| SfaNI | GCATC | 3 cut(s) | 49, 178, 340 |
| SfcI | CTRYAG | 1 cut(s) | 243 |
| SinI | GGWCC | 2 cut(s) | 216, 302 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 36, 415 |
| SphI | GCATGC | 1 cut(s) | 89 |
| Sse9I | AATT | 3 cut(s) | 70, 292, 428 |
| StyD4I | CCNGG | 3 cut(s) | 212, 298, 435 |
| TaqII | GACCGA | 1 cut(s) | 233 |
| TasI | AATT | 3 cut(s) | 70, 292, 428 |
| TfiI | GAWTC | 1 cut(s) | 323 |
| Tru1I | TTAA | 2 cut(s) | 204, 291 |
| Tru9I | TTAA | 2 cut(s) | 204, 291 |
| TscAI | CASTG | 1 cut(s) | 40 |
| TseFI | GTSAC | 1 cut(s) | 309 |
| TseI | GCWGC | 2 cut(s) | 166, 242 |
| Tsp45I | GTSAC | 1 cut(s) | 309 |
| TspDTI | ATGAA | 3 cut(s) | 54, 261, 381 |
| TspRI | CASTG | 1 cut(s) | 40 |
| VpaK11BI | GGWCC | 2 cut(s) | 216, 302 |
| XceI | RCATGY | 3 cut(s) | 89, 364, 420 |
| Zsp2I | ATGCAT | 2 cut(s) | 64, 355 |