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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 186 |
| Acc36I | ACCTGC | 1 cut(s) | 538 |
| AciI | CCGC | 1 cut(s) | 649 |
| AcoI | YGGCCR | 1 cut(s) | 588 |
| AcuI | CTGAAG | 2 cut(s) | 74, 371 |
| AfaI | GTAC | 4 cut(s) | 217, 383, 398, 548 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 391, 476 |
| AgsI | TTSAA | 2 cut(s) | 486, 571 |
| AjnI | CCWGG | 1 cut(s) | 385 |
| AluBI | AGCT | 2 cut(s) | 599, 659 |
| AluI | AGCT | 2 cut(s) | 599, 659 |
| Alw26I | GTCTC | 1 cut(s) | 300 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 52 |
| Ama87I | CYCGRG | 1 cut(s) | 562 |
| AoxI | GGCC | 1 cut(s) | 588 |
| ApeKI | GCWGC | 2 cut(s) | 114, 445 |
| AspS9I | GGNCC | 1 cut(s) | 151 |
| AvaI | CYCGRG | 1 cut(s) | 562 |
| AvaII | GGWCC | 1 cut(s) | 151 |
| BbsI | GAAGAC | 1 cut(s) | 339 |
| BbvI | GCAGC | 2 cut(s) | 101, 457 |
| BccI | CCATC | 4 cut(s) | 119, 263, 483, 632 |
| BciT130I | CCWGG | 1 cut(s) | 387 |
| BciVI | GTATCC | 1 cut(s) | 519 |
| BcoDI | GTCTC | 1 cut(s) | 300 |
| BfaI | CTAG | 2 cut(s) | 213, 231 |
| BfmI | CTRYAG | 1 cut(s) | 258 |
| BfuAI | ACCTGC | 1 cut(s) | 538 |
| BfuI | GTATCC | 1 cut(s) | 519 |
| BisI | GCNGC | 3 cut(s) | 115, 446, 650 |
| BlsI | GCNGC | 3 cut(s) | 116, 447, 651 |
| Bme1390I | CCNGG | 1 cut(s) | 387 |
| Bme18I | GGWCC | 1 cut(s) | 151 |
| BmeT110I | CYCGRG | 1 cut(s) | 562 |
| BmgT120I | GGNCC | 1 cut(s) | 151 |
| BmiI | GGNNCC | 1 cut(s) | 152 |
| BmrFI | CCNGG | 1 cut(s) | 387 |
| BmsI | GCATC | 4 cut(s) | 355, 445, 636, 661 |
| BpiI | GAAGAC | 1 cut(s) | 339 |
| BsaJI | CCNNGG | 3 cut(s) | 385, 534, 563 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 391, 476 |
| BseBI | CCWGG | 1 cut(s) | 387 |
| BseDI | CCNNGG | 3 cut(s) | 385, 534, 563 |
| BseGI | GGATG | 4 cut(s) | 274, 322, 370, 652 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 391, 476 |
| BseRI | GAGGAG | 1 cut(s) | 335 |
| BseXI | GCAGC | 2 cut(s) | 101, 457 |
| BshFI | GGCC | 1 cut(s) | 590 |
| BsiHKCI | CYCGRG | 1 cut(s) | 562 |
| BslFI | GGGAC | 1 cut(s) | 164 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 391, 476 |
| BsmAI | GTCTC | 1 cut(s) | 300 |
| BsmFI | GGGAC | 1 cut(s) | 164 |
| BsnI | GGCC | 1 cut(s) | 590 |
| BsoBI | CYCGRG | 1 cut(s) | 562 |
| BspACI | CCGC | 1 cut(s) | 649 |
| BspANI | GGCC | 1 cut(s) | 590 |
| BspLI | GGNNCC | 1 cut(s) | 152 |
| BspMI | ACCTGC | 1 cut(s) | 538 |
| BssECI | CCNNGG | 3 cut(s) | 385, 534, 563 |
| BssT1I | CCWWGG | 1 cut(s) | 534 |
| Bst2UI | CCWGG | 1 cut(s) | 387 |
| Bst4CI | ACNGT | 4 cut(s) | 48, 259, 311, 576 |
| Bst6I | CTCTTC | 1 cut(s) | 235 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 450 |
| BstDEI | CTNAG | 1 cut(s) | 600 |
| BstF5I | GGATG | 4 cut(s) | 274, 322, 370, 652 |
| BstMAI | GTCTC | 1 cut(s) | 300 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 111, 596 |
| BstNI | CCWGG | 1 cut(s) | 387 |
| BstNSI | RCATGY | 2 cut(s) | 8, 452 |
| BstSCI | CCNGG | 1 cut(s) | 385 |
| BstSFI | CTRYAG | 1 cut(s) | 258 |
| BstV1I | GCAGC | 2 cut(s) | 101, 457 |
| BstV2I | GAAGAC | 1 cut(s) | 339 |
| BsuI | GTATCC | 1 cut(s) | 519 |
| BsuRI | GGCC | 1 cut(s) | 590 |
| BtsCI | GGATG | 4 cut(s) | 274, 322, 370, 652 |
| BtsIMutI | CAGTG | 1 cut(s) | 316 |
| BveI | ACCTGC | 1 cut(s) | 538 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 450 |
| CaiI | CAGNNNCTG | 1 cut(s) | 52 |
| Cfr13I | GGNCC | 1 cut(s) | 151 |
| CseI | GACGC | 1 cut(s) | 418 |
| Csp6I | GTAC | 4 cut(s) | 216, 382, 397, 547 |
| CviAII | CATG | 5 cut(s) | 5, 203, 410, 449, 617 |
| CviJI | RGCY | 4 cut(s) | 376, 590, 599, 659 |
| CviKI_1 | RGCY | 4 cut(s) | 376, 590, 599, 659 |
| CviQI | GTAC | 4 cut(s) | 216, 382, 397, 547 |
| DdeI | CTNAG | 1 cut(s) | 600 |
| EaeI | YGGCCR | 1 cut(s) | 588 |
| Eam1104I | CTCTTC | 1 cut(s) | 235 |
| EarI | CTCTTC | 1 cut(s) | 235 |
| Eco130I | CCWWGG | 1 cut(s) | 534 |
| Eco47I | GGWCC | 1 cut(s) | 151 |
| Eco57I | CTGAAG | 2 cut(s) | 74, 371 |
| Eco88I | CYCGRG | 1 cut(s) | 562 |
| EcoRII | CCWGG | 1 cut(s) | 385 |
| EcoT14I | CCWWGG | 1 cut(s) | 534 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| ErhI | CCWWGG | 1 cut(s) | 534 |
| FaeI | CATG | 5 cut(s) | 8, 206, 413, 452, 620 |
| FaqI | GGGAC | 1 cut(s) | 164 |
| FatI | CATG | 5 cut(s) | 4, 202, 409, 448, 616 |
| Fnu4HI | GCNGC | 3 cut(s) | 115, 446, 650 |
| FokI | GGATG | 4 cut(s) | 281, 329, 377, 639 |
| Fsp4HI | GCNGC | 3 cut(s) | 115, 446, 650 |
| FspBI | CTAG | 2 cut(s) | 213, 231 |
| GluI | GCNGC | 3 cut(s) | 115, 446, 650 |
| HaeIII | GGCC | 1 cut(s) | 590 |
| HgaI | GACGC | 1 cut(s) | 418 |
| Hin1II | CATG | 5 cut(s) | 8, 206, 413, 452, 620 |
| HinfI | GANTC | 5 cut(s) | 248, 335, 406, 604, 662 |
| Hpy188I | TCNGA | 5 cut(s) | 54, 253, 331, 351, 609 |
| Hpy188III | TCNNGA | 2 cut(s) | 486, 562 |
| HpyAV | CCTTC | 2 cut(s) | 9, 296 |
| HpyCH4III | ACNGT | 4 cut(s) | 48, 259, 311, 576 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 117, 452 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 111, 596 |
| HpyF3I | CTNAG | 1 cut(s) | 600 |
| Hsp92II | CATG | 5 cut(s) | 8, 206, 413, 452, 620 |
| LpnPI | CCDG | 4 cut(s) | 372, 399, 543, 669 |
| Lsp1109I | GCAGC | 2 cut(s) | 101, 457 |
| LweI | GCATC | 4 cut(s) | 355, 445, 636, 661 |
| MaeI | CTAG | 2 cut(s) | 213, 231 |
| MaeIII | GTNAC | 1 cut(s) | 18 |
| MboII | GAAGA | 2 cut(s) | 252, 344 |
| MluCI | AATT | 1 cut(s) | 494 |
| MlyI | GAGTC | 1 cut(s) | 329 |
| MnlI | CCTC | 7 cut(s) | 73, 189, 236, 307, 313, 355, 558 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MslI | CAYNNNNRTG | 2 cut(s) | 453, 621 |
| MspA1I | CMGCKG | 1 cut(s) | 659 |
| MspR9I | CCNGG | 1 cut(s) | 387 |
| MvaI | CCWGG | 1 cut(s) | 387 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 111, 596 |
| NlaIII | CATG | 5 cut(s) | 8, 206, 413, 452, 620 |
| NlaIV | GGNNCC | 1 cut(s) | 152 |
| NmuCI | GTSAC | 1 cut(s) | 18 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 2 cut(s) | 8, 452 |
| PaeI | GCATGC | 2 cut(s) | 8, 452 |
| PfeI | GAWTC | 4 cut(s) | 248, 406, 604, 662 |
| PflFI | GACNNNGTC | 1 cut(s) | 428 |
| PkrI | GCNGC | 3 cut(s) | 116, 447, 651 |
| PleI | GAGTC | 1 cut(s) | 329 |
| PpsI | GAGTC | 1 cut(s) | 329 |
| PsiI | TTATAA | 1 cut(s) | 186 |
| Psp6I | CCWGG | 1 cut(s) | 385 |
| PspGI | CCWGG | 1 cut(s) | 385 |
| PspN4I | GGNNCC | 1 cut(s) | 152 |
| PspPI | GGNCC | 1 cut(s) | 151 |
| PstNI | CAGNNNCTG | 1 cut(s) | 52 |
| PsyI | GACNNNGTC | 1 cut(s) | 428 |
| PvuII | CAGCTG | 1 cut(s) | 659 |
| RsaI | GTAC | 4 cut(s) | 217, 383, 398, 548 |
| RsaNI | GTAC | 4 cut(s) | 216, 382, 397, 547 |
| RseI | CAYNNNNRTG | 2 cut(s) | 453, 621 |
| SatI | GCNGC | 3 cut(s) | 115, 446, 650 |
| Sau96I | GGNCC | 1 cut(s) | 151 |
| SchI | GAGTC | 1 cut(s) | 329 |
| ScrFI | CCNGG | 1 cut(s) | 387 |
| SetI | ASST | 8 cut(s) | 20, 200, 214, 532, 540, 569, 601, 661 |
| SfaNI | GCATC | 4 cut(s) | 355, 445, 636, 661 |
| SfcI | CTRYAG | 1 cut(s) | 258 |
| SinI | GGWCC | 1 cut(s) | 151 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 453, 621 |
| SphI | GCATGC | 2 cut(s) | 8, 452 |
| Sse9I | AATT | 1 cut(s) | 494 |
| SsiI | CCGC | 1 cut(s) | 649 |
| SspMI | CTAG | 2 cut(s) | 213, 231 |
| StyD4I | CCNGG | 1 cut(s) | 385 |
| StyI | CCWWGG | 1 cut(s) | 534 |
| TaaI | ACNGT | 4 cut(s) | 48, 259, 311, 576 |
| TasI | AATT | 1 cut(s) | 494 |
| TatI | WGTACW | 1 cut(s) | 215 |
| TauI | GCSGC | 1 cut(s) | 652 |
| TfiI | GAWTC | 4 cut(s) | 248, 406, 604, 662 |
| TscAI | CASTG | 1 cut(s) | 316 |
| TseFI | GTSAC | 1 cut(s) | 18 |
| TseI | GCWGC | 2 cut(s) | 114, 445 |
| Tsp45I | GTSAC | 1 cut(s) | 18 |
| TspDTI | ATGAA | 1 cut(s) | 398 |
| TspRI | CASTG | 1 cut(s) | 316 |
| Tth111I | GACNNNGTC | 1 cut(s) | 428 |
| VpaK11BI | GGWCC | 1 cut(s) | 151 |
| XceI | RCATGY | 2 cut(s) | 8, 452 |
| XspI | CTAG | 2 cut(s) | 213, 231 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |