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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 291 |
| AclWI | GGATC | 2 cut(s) | 120, 439 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 212 |
| AgsI | TTSAA | 2 cut(s) | 256, 442 |
| AluBI | AGCT | 6 cut(s) | 9, 15, 270, 284, 412, 513 |
| AluI | AGCT | 6 cut(s) | 9, 15, 270, 284, 412, 513 |
| Alw21I | GWGCWC | 1 cut(s) | 272 |
| AlwI | GGATC | 2 cut(s) | 120, 439 |
| AspS9I | GGNCC | 1 cut(s) | 67 |
| AsuHPI | GGTGA | 3 cut(s) | 180, 261, 351 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| BaeGI | GKGCMC | 1 cut(s) | 389 |
| BanII | GRGCYC | 1 cut(s) | 272 |
| Bbv12I | GWGCWC | 1 cut(s) | 272 |
| BciVI | GTATCC | 1 cut(s) | 513 |
| BclI | TGATCA | 1 cut(s) | 531 |
| BfaI | CTAG | 2 cut(s) | 193, 200 |
| BfmI | CTRYAG | 1 cut(s) | 221 |
| BfuI | GTATCC | 1 cut(s) | 513 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 1 cut(s) | 67 |
| BmsI | GCATC | 2 cut(s) | 64, 174 |
| BpuEI | CTTGAG | 3 cut(s) | 31, 69, 441 |
| BsaBI | GATNNNNATC | 1 cut(s) | 215 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 212 |
| Bse1I | ACTGG | 1 cut(s) | 499 |
| Bse3DI | GCAATG | 1 cut(s) | 187 |
| Bse8I | GATNNNNATC | 1 cut(s) | 215 |
| BseJI | GATNNNNATC | 1 cut(s) | 215 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 212 |
| BseMI | GCAATG | 1 cut(s) | 187 |
| BseNI | ACTGG | 1 cut(s) | 499 |
| BseSI | GKGCMC | 1 cut(s) | 389 |
| BseYI | CCCAGC | 1 cut(s) | 513 |
| Bsh1236I | CGCG | 1 cut(s) | 291 |
| BsiHKAI | GWGCWC | 1 cut(s) | 272 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 212 |
| Bsp1286I | GDGCHC | 2 cut(s) | 272, 389 |
| Bsp143I | GATC | 4 cut(s) | 112, 414, 444, 531 |
| BspFNI | CGCG | 1 cut(s) | 291 |
| BspPI | GGATC | 2 cut(s) | 120, 439 |
| BsrDI | GCAATG | 1 cut(s) | 187 |
| BsrI | ACTGG | 1 cut(s) | 499 |
| BssMI | GATC | 4 cut(s) | 112, 414, 444, 531 |
| Bst4CI | ACNGT | 3 cut(s) | 105, 163, 325 |
| BstDEI | CTNAG | 2 cut(s) | 363, 373 |
| BstEII | GGTNACC | 1 cut(s) | 168 |
| BstFNI | CGCG | 1 cut(s) | 291 |
| BstKTI | GATC | 4 cut(s) | 115, 417, 447, 534 |
| BstMBI | GATC | 4 cut(s) | 112, 414, 444, 531 |
| BstNSI | RCATGY | 1 cut(s) | 151 |
| BstPI | GGTNACC | 1 cut(s) | 168 |
| BstSFI | CTRYAG | 1 cut(s) | 221 |
| BstSLI | GKGCMC | 1 cut(s) | 389 |
| BstUI | CGCG | 1 cut(s) | 291 |
| BstX2I | RGATCY | 2 cut(s) | 112, 444 |
| BstYI | RGATCY | 2 cut(s) | 112, 444 |
| BsuI | GTATCC | 1 cut(s) | 513 |
| BtsIMutI | CAGTG | 1 cut(s) | 168 |
| Cfr13I | GGNCC | 1 cut(s) | 67 |
| CviAII | CATG | 2 cut(s) | 64, 148 |
| CviJI | RGCY | 7 cut(s) | 9, 15, 133, 270, 284, 412, 513 |
| CviKI_1 | RGCY | 7 cut(s) | 9, 15, 133, 270, 284, 412, 513 |
| DdeI | CTNAG | 2 cut(s) | 363, 373 |
| DpnI | GATC | 4 cut(s) | 114, 416, 446, 533 |
| DpnII | GATC | 4 cut(s) | 112, 414, 444, 531 |
| DraI | TTTAAA | 1 cut(s) | 303 |
| Ecl136II | GAGCTC | 1 cut(s) | 270 |
| Eco24I | GRGCYC | 1 cut(s) | 272 |
| Eco32I | GATATC | 1 cut(s) | 38 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| Eco53kI | GAGCTC | 1 cut(s) | 270 |
| Eco91I | GGTNACC | 1 cut(s) | 168 |
| EcoICRI | GAGCTC | 1 cut(s) | 270 |
| EcoO65I | GGTNACC | 1 cut(s) | 168 |
| EcoRV | GATATC | 1 cut(s) | 38 |
| EcoT22I | ATGCAT | 1 cut(s) | 189 |
| EcoT38I | GRGCYC | 1 cut(s) | 272 |
| FaeI | CATG | 2 cut(s) | 67, 151 |
| FaiI | YATR | 6 cut(s) | 65, 101, 149, 223, 264, 298 |
| FatI | CATG | 2 cut(s) | 63, 147 |
| FbaI | TGATCA | 1 cut(s) | 531 |
| FriOI | GRGCYC | 1 cut(s) | 272 |
| FspBI | CTAG | 2 cut(s) | 193, 200 |
| GsaI | CCCAGC | 1 cut(s) | 517 |
| Hin1II | CATG | 2 cut(s) | 67, 151 |
| HincII | GTYRAC | 1 cut(s) | 369 |
| HindII | GTYRAC | 1 cut(s) | 369 |
| HinfI | GANTC | 5 cut(s) | 216, 252, 356, 397, 454 |
| HphI | GGTGA | 3 cut(s) | 180, 261, 351 |
| Hpy166II | GTNNAC | 1 cut(s) | 369 |
| Hpy188I | TCNGA | 3 cut(s) | 42, 117, 396 |
| Hpy188III | TCNNGA | 4 cut(s) | 25, 48, 95, 256 |
| Hpy8I | GTNNAC | 1 cut(s) | 369 |
| HpyAV | CCTTC | 1 cut(s) | 324 |
| HpyCH4III | ACNGT | 3 cut(s) | 105, 163, 325 |
| HpyCH4V | TGCA | 4 cut(s) | 181, 187, 319, 423 |
| HpyF3I | CTNAG | 2 cut(s) | 363, 373 |
| Hsp92II | CATG | 2 cut(s) | 67, 151 |
| Ksp22I | TGATCA | 1 cut(s) | 531 |
| Kzo9I | GATC | 4 cut(s) | 112, 414, 444, 531 |
| LmnI | GCTCC | 1 cut(s) | 267 |
| LpnPI | CCDG | 5 cut(s) | 38, 80, 461, 480, 499 |
| LweI | GCATC | 2 cut(s) | 64, 174 |
| MaeI | CTAG | 2 cut(s) | 193, 200 |
| MaeIII | GTNAC | 1 cut(s) | 168 |
| MalI | GATC | 4 cut(s) | 114, 416, 446, 533 |
| MboI | GATC | 4 cut(s) | 112, 414, 444, 531 |
| MboII | GAAGA | 2 cut(s) | 454, 517 |
| MfeI | CAATTG | 1 cut(s) | 467 |
| MflI | RGATCY | 2 cut(s) | 112, 444 |
| MhlI | GDGCHC | 2 cut(s) | 272, 389 |
| MluCI | AATT | 2 cut(s) | 467, 487 |
| MlyI | GAGTC | 1 cut(s) | 448 |
| MmeI | TCCRAC | 1 cut(s) | 177 |
| MnlI | CCTC | 3 cut(s) | 44, 80, 339 |
| Mph1103I | ATGCAT | 1 cut(s) | 189 |
| MseI | TTAA | 4 cut(s) | 17, 175, 302, 499 |
| MunI | CAATTG | 1 cut(s) | 467 |
| MvnI | CGCG | 1 cut(s) | 291 |
| NdeII | GATC | 4 cut(s) | 112, 414, 444, 531 |
| NlaIII | CATG | 2 cut(s) | 67, 151 |
| NmuCI | GTSAC | 1 cut(s) | 168 |
| NsiI | ATGCAT | 1 cut(s) | 189 |
| NspI | RCATGY | 1 cut(s) | 151 |
| PfeI | GAWTC | 4 cut(s) | 216, 252, 356, 397 |
| PleI | GAGTC | 1 cut(s) | 448 |
| PpsI | GAGTC | 1 cut(s) | 448 |
| Psp124BI | GAGCTC | 1 cut(s) | 272 |
| PspEI | GGTNACC | 1 cut(s) | 168 |
| PspFI | CCCAGC | 1 cut(s) | 513 |
| PspPI | GGNCC | 1 cut(s) | 67 |
| PsuI | RGATCY | 2 cut(s) | 112, 444 |
| SacI | GAGCTC | 1 cut(s) | 272 |
| SaqAI | TTAA | 4 cut(s) | 17, 175, 302, 499 |
| Sau3AI | GATC | 4 cut(s) | 112, 414, 444, 531 |
| Sau96I | GGNCC | 1 cut(s) | 67 |
| SchI | GAGTC | 1 cut(s) | 448 |
| SduI | GDGCHC | 2 cut(s) | 272, 389 |
| SfaNI | GCATC | 2 cut(s) | 64, 174 |
| SfcI | CTRYAG | 1 cut(s) | 221 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SmlI | CTYRAG | 3 cut(s) | 10, 48, 456 |
| SmoI | CTYRAG | 3 cut(s) | 10, 48, 456 |
| Sse9I | AATT | 2 cut(s) | 467, 487 |
| SspMI | CTAG | 2 cut(s) | 193, 200 |
| SstI | GAGCTC | 1 cut(s) | 272 |
| TaaI | ACNGT | 3 cut(s) | 105, 163, 325 |
| TaqI | TCGA | 1 cut(s) | 72 |
| TasI | AATT | 2 cut(s) | 467, 487 |
| TfiI | GAWTC | 4 cut(s) | 216, 252, 356, 397 |
| Tru1I | TTAA | 4 cut(s) | 17, 175, 302, 499 |
| Tru9I | TTAA | 4 cut(s) | 17, 175, 302, 499 |
| TscAI | CASTG | 1 cut(s) | 168 |
| TseFI | GTSAC | 1 cut(s) | 168 |
| Tsp45I | GTSAC | 1 cut(s) | 168 |
| TspDTI | ATGAA | 2 cut(s) | 389, 518 |
| TspRI | CASTG | 1 cut(s) | 168 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XceI | RCATGY | 1 cut(s) | 151 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 160 |
| XspI | CTAG | 2 cut(s) | 193, 200 |
| Zsp2I | ATGCAT | 1 cut(s) | 189 |