source UniProtKB
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2603 |
| Acc36I | ACCTGC | 1 cut(s) | 49 |
| Acc65I | GGTACC | 1 cut(s) | 1103 |
| AccB1I | GGYRCC | 2 cut(s) | 374, 1103 |
| AccI | GTMKAC | 1 cut(s) | 2205 |
| AccII | CGCG | 1 cut(s) | 1528 |
| AciI | CCGC | 5 cut(s) | 547, 899, 930, 1831, 2834 |
| AclWI | GGATC | 6 cut(s) | 348, 605, 851, 1343, 1953, 2741 |
| AcsI | RAATTY | 6 cut(s) | 73, 599, 745, 1522, 1773, 2633 |
| AcuI | CTGAAG | 3 cut(s) | 2001, 2031, 2300 |
| AcyI | GRCGYC | 1 cut(s) | 375 |
| AdeI | CACNNNGTG | 1 cut(s) | 2541 |
| AfaI | GTAC | 5 cut(s) | 1037, 1105, 1767, 2032, 2823 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 371, 384, 935, 986, 1008, 2840 |
| AflIII | ACRYGT | 3 cut(s) | 1030, 1038, 2246 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2584 |
| AjnI | CCWGG | 2 cut(s) | 769, 784 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 869, 901 |
| AluBI | AGCT | 9 cut(s) | 19, 278, 505, 1135, 1781, 1787, 2054, 2360, 2531 |
| AluI | AGCT | 9 cut(s) | 19, 278, 505, 1135, 1781, 1787, 2054, 2360, 2531 |
| Alw21I | GWGCWC | 4 cut(s) | 351, 1623, 2504, 2833 |
| Alw26I | GTCTC | 5 cut(s) | 1406, 1714, 2091, 2323, 2480 |
| AlwI | GGATC | 6 cut(s) | 348, 605, 851, 1343, 1953, 2741 |
| AoxI | GGCC | 4 cut(s) | 593, 689, 1124, 2423 |
| ApeKI | GCWGC | 4 cut(s) | 704, 1012, 1206, 2051 |
| ApoI | RAATTY | 6 cut(s) | 73, 599, 745, 1522, 1773, 2633 |
| AseI | ATTAAT | 2 cut(s) | 2235, 2463 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1152 |
| Asp718I | GGTACC | 1 cut(s) | 1103 |
| AspLEI | GCGC | 3 cut(s) | 377, 402, 1530 |
| AspS9I | GGNCC | 3 cut(s) | 690, 773, 1811 |
| AsuC2I | CCSGG | 1 cut(s) | 949 |
| AsuHPI | GGTGA | 6 cut(s) | 674, 1174, 1280, 1349, 1355, 2987 |
| AsuII | TTCGAA | 1 cut(s) | 1555 |
| AsuNHI | GCTAGC | 1 cut(s) | 1657 |
| AvaII | GGWCC | 2 cut(s) | 773, 1811 |
| BanI | GGYRCC | 2 cut(s) | 374, 1103 |
| Bbv12I | GWGCWC | 4 cut(s) | 351, 1623, 2504, 2833 |
| BbvI | GCAGC | 4 cut(s) | 691, 999, 1218, 2063 |
| BceAI | ACGGC | 1 cut(s) | 1442 |
| BciT130I | CCWGG | 2 cut(s) | 771, 786 |
| BciVI | GTATCC | 1 cut(s) | 2030 |
| BclI | TGATCA | 1 cut(s) | 1066 |
| BcnI | CCSGG | 1 cut(s) | 949 |
| BcoDI | GTCTC | 5 cut(s) | 1406, 1714, 2091, 2323, 2480 |
| BfmI | CTRYAG | 2 cut(s) | 1782, 2196 |
| BfoI | RGCGCY | 1 cut(s) | 378 |
| BfuAI | ACCTGC | 1 cut(s) | 49 |
| BfuI | GTATCC | 1 cut(s) | 2030 |
| BglII | AGATCT | 2 cut(s) | 826, 2911 |
| BisI | GCNGC | 5 cut(s) | 548, 705, 1013, 1207, 2052 |
| BlsI | GCNGC | 5 cut(s) | 549, 706, 1014, 1208, 2053 |
| Bme1390I | CCNGG | 3 cut(s) | 771, 786, 949 |
| Bme18I | GGWCC | 2 cut(s) | 773, 1811 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2584 |
| BmgT120I | GGNCC | 3 cut(s) | 690, 773, 1811 |
| BmiI | GGNNCC | 7 cut(s) | 39, 376, 1105, 1483, 1585, 2471, 2643 |
| BmrFI | CCNGG | 3 cut(s) | 771, 786, 949 |
| BmsI | GCATC | 7 cut(s) | 475, 559, 741, 856, 1434, 2737, 2771 |
| BmtI | GCTAGC | 1 cut(s) | 1661 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2681 |
| BpmI | CTGGAG | 1 cut(s) | 210 |
| Bpu10I | CCTNAGC | 3 cut(s) | 432, 777, 2427 |
| Bpu14I | TTCGAA | 1 cut(s) | 1555 |
| BpuEI | CTTGAG | 3 cut(s) | 460, 2111, 2936 |
| BpuMI | CCSGG | 1 cut(s) | 949 |
| Bsa29I | ATCGAT | 1 cut(s) | 2176 |
| BsaAI | YACGTR | 1 cut(s) | 1618 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2295 |
| BsaHI | GRCGYC | 1 cut(s) | 375 |
| BsaJI | CCNNGG | 6 cut(s) | 693, 738, 769, 785, 1814, 2210 |
| BsaWI | WCCGGW | 2 cut(s) | 979, 2033 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1694, 1724 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 371, 384, 935, 986, 1008, 2840 |
| Bse118I | RCCGGY | 1 cut(s) | 2884 |
| Bse1I | ACTGG | 2 cut(s) | 1144, 2683 |
| Bse3DI | GCAATG | 2 cut(s) | 758, 2086 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2295 |
| BseBI | CCWGG | 2 cut(s) | 771, 786 |
| BseCI | ATCGAT | 1 cut(s) | 2176 |
| BseDI | CCNNGG | 6 cut(s) | 693, 738, 769, 785, 1814, 2210 |
| BseJI | GATNNNNATC | 1 cut(s) | 2295 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 371, 384, 935, 986, 1008, 2840 |
| BseMI | GCAATG | 2 cut(s) | 758, 2086 |
| BseMII | CTCAG | 3 cut(s) | 821, 2046, 2484 |
| BseNI | ACTGG | 2 cut(s) | 1144, 2683 |
| BseXI | GCAGC | 4 cut(s) | 691, 999, 1218, 2063 |
| BsgI | GTGCAG | 1 cut(s) | 27 |
| Bsh1236I | CGCG | 1 cut(s) | 1528 |
| BshFI | GGCC | 4 cut(s) | 595, 691, 1126, 2425 |
| BshNI | GGYRCC | 2 cut(s) | 374, 1103 |
| BshVI | ATCGAT | 1 cut(s) | 2176 |
| BsiHKAI | GWGCWC | 4 cut(s) | 351, 1623, 2504, 2833 |
| BsiSI | CCGG | 5 cut(s) | 948, 980, 1676, 2034, 2885 |
| BslFI | GGGAC | 2 cut(s) | 2428, 2689 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 371, 384, 935, 986, 1008, 2840 |
| BsmAI | GTCTC | 5 cut(s) | 1406, 1714, 2091, 2323, 2480 |
| BsmFI | GGGAC | 2 cut(s) | 2428, 2689 |
| BsnI | GGCC | 4 cut(s) | 595, 691, 1126, 2425 |
| Bsp119I | TTCGAA | 1 cut(s) | 1555 |
| Bsp1286I | GDGCHC | 4 cut(s) | 351, 1623, 2504, 2833 |
| Bsp1407I | TGTACA | 1 cut(s) | 1035 |
| Bsp19I | CCATGG | 1 cut(s) | 2210 |
| BspACI | CCGC | 5 cut(s) | 547, 899, 930, 1831, 2834 |
| BspANI | GGCC | 4 cut(s) | 595, 691, 1126, 2425 |
| BspCNI | CTCAG | 3 cut(s) | 822, 2047, 2485 |
| BspDI | ATCGAT | 1 cut(s) | 2176 |
| BspFNI | CGCG | 1 cut(s) | 1528 |
| BspLI | GGNNCC | 7 cut(s) | 39, 376, 1105, 1483, 1585, 2471, 2643 |
| BspMI | ACCTGC | 1 cut(s) | 49 |
| BspOI | GCTAGC | 1 cut(s) | 1661 |
| BspPI | GGATC | 6 cut(s) | 348, 605, 851, 1343, 1953, 2741 |
| BspQI | GCTCTTC | 1 cut(s) | 2492 |
| BspT104I | TTCGAA | 1 cut(s) | 1555 |
| BspT107I | GGYRCC | 2 cut(s) | 374, 1103 |
| BsrDI | GCAATG | 2 cut(s) | 758, 2086 |
| BsrFI | RCCGGY | 1 cut(s) | 2884 |
| BsrGI | TGTACA | 1 cut(s) | 1035 |
| BsrI | ACTGG | 2 cut(s) | 1144, 2683 |
| BssAI | RCCGGY | 1 cut(s) | 2884 |
| BssECI | CCNNGG | 6 cut(s) | 693, 738, 769, 785, 1814, 2210 |
| BssNI | GRCGYC | 1 cut(s) | 375 |
| BssT1I | CCWWGG | 3 cut(s) | 738, 1814, 2210 |
| Bst2UI | CCWGG | 2 cut(s) | 771, 786 |
| Bst4CI | ACNGT | 8 cut(s) | 139, 170, 1108, 1337, 1583, 1682, 1706, 2513 |
| Bst6I | CTCTTC | 3 cut(s) | 1250, 2007, 2492 |
| BstACI | GRCGYC | 1 cut(s) | 375 |
| BstAUI | TGTACA | 1 cut(s) | 1035 |
| BstBAI | YACGTR | 1 cut(s) | 1618 |
| BstBI | TTCGAA | 1 cut(s) | 1555 |
| BstC8I | GCNNGC | 5 cut(s) | 567, 689, 1659, 1925, 2415 |
| BstDEI | CTNAG | 9 cut(s) | 432, 623, 668, 777, 830, 2055, 2427, 2493, 2825 |
| BstDSI | CCRYGG | 2 cut(s) | 693, 2210 |
| BstFNI | CGCG | 1 cut(s) | 1528 |
| BstH2I | RGCGCY | 1 cut(s) | 378 |
| BstHHI | GCGC | 3 cut(s) | 377, 402, 1530 |
| BstMAI | GTCTC | 5 cut(s) | 1406, 1714, 2091, 2323, 2480 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 494, 511, 760, 866, 1132, 2768 |
| BstNI | CCWGG | 2 cut(s) | 771, 786 |
| BstNSI | RCATGY | 7 cut(s) | 736, 978, 1034, 1042, 1927, 2250, 2819 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2681 |
| BstSCI | CCNGG | 3 cut(s) | 769, 784, 947 |
| BstSFI | CTRYAG | 2 cut(s) | 1782, 2196 |
| BstUI | CGCG | 1 cut(s) | 1528 |
| BstV1I | GCAGC | 4 cut(s) | 691, 999, 1218, 2063 |
| BstX2I | RGATCY | 6 cut(s) | 340, 610, 826, 1945, 2746, 2911 |
| BstYI | RGATCY | 6 cut(s) | 340, 610, 826, 1945, 2746, 2911 |
| Bsu15I | ATCGAT | 1 cut(s) | 2176 |
| BsuI | GTATCC | 1 cut(s) | 2030 |
| BsuRI | GGCC | 4 cut(s) | 595, 691, 1126, 2425 |
| BsuTUI | ATCGAT | 1 cut(s) | 2176 |
| BtgI | CCRYGG | 2 cut(s) | 693, 2210 |
| BtsIMutI | CAGTG | 2 cut(s) | 2353, 2518 |
| BveI | ACCTGC | 1 cut(s) | 49 |
| Cac8I | GCNNGC | 5 cut(s) | 567, 689, 1659, 1925, 2415 |
| CfoI | GCGC | 3 cut(s) | 377, 402, 1530 |
| Cfr10I | RCCGGY | 1 cut(s) | 2884 |
| Cfr13I | GGNCC | 3 cut(s) | 690, 773, 1811 |
| ClaI | ATCGAT | 1 cut(s) | 2176 |
| CseI | GACGC | 1 cut(s) | 2085 |
| Csp6I | GTAC | 5 cut(s) | 1036, 1104, 1766, 2031, 2822 |
| CviQI | GTAC | 5 cut(s) | 1036, 1104, 1766, 2031, 2822 |
| DdeI | CTNAG | 9 cut(s) | 432, 623, 668, 777, 830, 2055, 2427, 2493, 2825 |
| DinI | GGCGCC | 1 cut(s) | 376 |
| DraI | TTTAAA | 1 cut(s) | 1791 |
| DraIII | CACNNNGTG | 1 cut(s) | 2541 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2584 |
| Eam1104I | CTCTTC | 3 cut(s) | 1250, 2007, 2492 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2584 |
| EarI | CTCTTC | 3 cut(s) | 1250, 2007, 2492 |
| Eco130I | CCWWGG | 3 cut(s) | 738, 1814, 2210 |
| Eco147I | AGGCCT | 1 cut(s) | 1126 |
| Eco47I | GGWCC | 2 cut(s) | 773, 1811 |
| Eco57I | CTGAAG | 3 cut(s) | 2001, 2031, 2300 |
| EcoO109I | RGGNCCY | 1 cut(s) | 773 |
| EcoRII | CCWGG | 2 cut(s) | 769, 784 |
| EcoT14I | CCWWGG | 3 cut(s) | 738, 1814, 2210 |
| EcoT22I | ATGCAT | 3 cut(s) | 871, 1449, 1925 |
| EgeI | GGCGCC | 1 cut(s) | 376 |
| EheI | GGCGCC | 1 cut(s) | 376 |
| ErhI | CCWWGG | 3 cut(s) | 738, 1814, 2210 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 78, 110, 1502, 1534, 1785, 1817 |
| FaqI | GGGAC | 2 cut(s) | 2428, 2689 |
| FauI | CCCGC | 1 cut(s) | 937 |
| FauNDI | CATATG | 1 cut(s) | 2334 |
| FbaI | TGATCA | 1 cut(s) | 1066 |
| FblI | GTMKAC | 1 cut(s) | 2205 |
| Fnu4HI | GCNGC | 5 cut(s) | 548, 705, 1013, 1207, 2052 |
| Fsp4HI | GCNGC | 5 cut(s) | 548, 705, 1013, 1207, 2052 |
| GlaI | GCGC | 3 cut(s) | 376, 401, 1529 |
| GluI | GCNGC | 5 cut(s) | 548, 705, 1013, 1207, 2052 |
| GsuI | CTGGAG | 1 cut(s) | 210 |
| HaeII | RGCGCY | 1 cut(s) | 378 |
| HaeIII | GGCC | 4 cut(s) | 595, 691, 1126, 2425 |
| HapII | CCGG | 5 cut(s) | 948, 980, 1676, 2034, 2885 |
| HgaI | GACGC | 1 cut(s) | 2085 |
| HhaI | GCGC | 3 cut(s) | 377, 402, 1530 |
| Hin1I | GRCGYC | 1 cut(s) | 375 |
| Hin6I | GCGC | 3 cut(s) | 375, 400, 1528 |
| HinP1I | GCGC | 3 cut(s) | 375, 400, 1528 |
| HincII | GTYRAC | 3 cut(s) | 559, 1231, 2713 |
| HindII | GTYRAC | 3 cut(s) | 559, 1231, 2713 |
| HindIII | AAGCTT | 1 cut(s) | 276 |
| HinfI | GANTC | 9 cut(s) | 59, 301, 529, 560, 627, 1966, 2084, 2291, 2978 |
| HpaI | GTTAAC | 1 cut(s) | 2713 |
| HpaII | CCGG | 5 cut(s) | 948, 980, 1676, 2034, 2885 |
| HphI | GGTGA | 6 cut(s) | 674, 1174, 1280, 1349, 1355, 2987 |
| Hpy166II | GTNNAC | 8 cut(s) | 82, 559, 912, 1036, 1231, 1285, 2206, 2713 |
| Hpy188I | TCNGA | 8 cut(s) | 64, 178, 366, 643, 831, 1147, 2398, 2983 |
| Hpy8I | GTNNAC | 8 cut(s) | 82, 559, 912, 1036, 1231, 1285, 2206, 2713 |
| HpyCH4III | ACNGT | 8 cut(s) | 139, 170, 1108, 1337, 1583, 1682, 1706, 2513 |
| HpyCH4IV | ACGT | 1 cut(s) | 1617 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 494, 511, 760, 866, 1132, 2768 |
| HpyF3I | CTNAG | 9 cut(s) | 432, 623, 668, 777, 830, 2055, 2427, 2493, 2825 |
| HpySE526I | ACGT | 1 cut(s) | 1617 |
| Hsp92I | GRCGYC | 1 cut(s) | 375 |
| HspAI | GCGC | 3 cut(s) | 375, 400, 1528 |
| KasI | GGCGCC | 1 cut(s) | 374 |
| KpnI | GGTACC | 1 cut(s) | 1107 |
| Ksp22I | TGATCA | 1 cut(s) | 1066 |
| KspAI | GTTAAC | 1 cut(s) | 2713 |
| LguI | GCTCTTC | 1 cut(s) | 2492 |
| Lsp1109I | GCAGC | 4 cut(s) | 691, 999, 1218, 2063 |
| LweI | GCATC | 7 cut(s) | 475, 559, 741, 856, 1434, 2737, 2771 |
| MaeII | ACGT | 1 cut(s) | 1617 |
| MaeIII | GTNAC | 5 cut(s) | 67, 617, 1343, 1743, 2975 |
| MflI | RGATCY | 6 cut(s) | 340, 610, 826, 1945, 2746, 2911 |
| MhlI | GDGCHC | 4 cut(s) | 351, 1623, 2504, 2833 |
| Mly113I | GGCGCC | 1 cut(s) | 375 |
| MlyI | GAGTC | 6 cut(s) | 68, 538, 554, 621, 2093, 2972 |
| MmeI | TCCRAC | 1 cut(s) | 2556 |
| Mph1103I | ATGCAT | 3 cut(s) | 871, 1449, 1925 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1152 |
| MslI | CAYNNNNRTG | 2 cut(s) | 309, 800 |
| MspA1I | CMGCKG | 1 cut(s) | 2054 |
| MspI | CCGG | 5 cut(s) | 948, 980, 1676, 2034, 2885 |
| MspR9I | CCNGG | 3 cut(s) | 771, 786, 949 |
| MvaI | CCWGG | 2 cut(s) | 771, 786 |
| MvnI | CGCG | 1 cut(s) | 1528 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 494, 511, 760, 866, 1132, 2768 |
| NarI | GGCGCC | 1 cut(s) | 375 |
| NciI | CCSGG | 1 cut(s) | 949 |
| NcoI | CCATGG | 1 cut(s) | 2210 |
| NdeI | CATATG | 1 cut(s) | 2334 |
| NheI | GCTAGC | 1 cut(s) | 1657 |
| NlaIV | GGNNCC | 7 cut(s) | 39, 376, 1105, 1483, 1585, 2471, 2643 |
| NmuCI | GTSAC | 4 cut(s) | 67, 1343, 1743, 2975 |
| NsiI | ATGCAT | 3 cut(s) | 871, 1449, 1925 |
| NspI | RCATGY | 7 cut(s) | 736, 978, 1034, 1042, 1927, 2250, 2819 |
| NspV | TTCGAA | 1 cut(s) | 1555 |
| PaeI | GCATGC | 1 cut(s) | 1927 |
| PceI | AGGCCT | 1 cut(s) | 1126 |
| PciI | ACATGT | 3 cut(s) | 1030, 1038, 2246 |
| PciSI | GCTCTTC | 1 cut(s) | 2492 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1152 |
| PfeI | GAWTC | 3 cut(s) | 301, 1966, 2291 |
| PflFI | GACNNNGTC | 1 cut(s) | 630 |
| PkrI | GCNGC | 5 cut(s) | 549, 706, 1014, 1208, 2053 |
| PleI | GAGTC | 6 cut(s) | 67, 537, 554, 621, 2092, 2972 |
| PluTI | GGCGCC | 1 cut(s) | 378 |
| PpsI | GAGTC | 6 cut(s) | 67, 537, 554, 621, 2092, 2972 |
| Ppu21I | YACGTR | 1 cut(s) | 1618 |
| PpuMI | RGGWCCY | 1 cut(s) | 773 |
| PscI | ACATGT | 3 cut(s) | 1030, 1038, 2246 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2681 |
| PshBI | ATTAAT | 2 cut(s) | 2235, 2463 |
| PsiI | TTATAA | 1 cut(s) | 2603 |
| Psp5II | RGGWCCY | 1 cut(s) | 773 |
| Psp6I | CCWGG | 2 cut(s) | 769, 784 |
| PspGI | CCWGG | 2 cut(s) | 769, 784 |
| PspN4I | GGNNCC | 7 cut(s) | 39, 376, 1105, 1483, 1585, 2471, 2643 |
| PspPI | GGNCC | 3 cut(s) | 690, 773, 1811 |
| PspPPI | RGGWCCY | 1 cut(s) | 773 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 975, 1007 |
| PsuI | RGATCY | 6 cut(s) | 340, 610, 826, 1945, 2746, 2911 |
| PsyI | GACNNNGTC | 1 cut(s) | 630 |
| PvuII | CAGCTG | 1 cut(s) | 2054 |
| RsaI | GTAC | 5 cut(s) | 1037, 1105, 1767, 2032, 2823 |
| RsaNI | GTAC | 5 cut(s) | 1036, 1104, 1766, 2031, 2822 |
| RseI | CAYNNNNRTG | 2 cut(s) | 309, 800 |
| SapI | GCTCTTC | 1 cut(s) | 2492 |
| SatI | GCNGC | 5 cut(s) | 548, 705, 1013, 1207, 2052 |
| Sau96I | GGNCC | 3 cut(s) | 690, 773, 1811 |
| SchI | GAGTC | 6 cut(s) | 68, 538, 554, 621, 2093, 2972 |
| ScrFI | CCNGG | 3 cut(s) | 771, 786, 949 |
| SduI | GDGCHC | 4 cut(s) | 351, 1623, 2504, 2833 |
| SfaNI | GCATC | 7 cut(s) | 475, 559, 741, 856, 1434, 2737, 2771 |
| SfcI | CTRYAG | 2 cut(s) | 1782, 2196 |
| SfoI | GGCGCC | 1 cut(s) | 376 |
| SfuI | TTCGAA | 1 cut(s) | 1555 |
| SinI | GGWCC | 2 cut(s) | 773, 1811 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 309, 800 |
| SmlI | CTYRAG | 3 cut(s) | 439, 2090, 2915 |
| SmoI | CTYRAG | 3 cut(s) | 439, 2090, 2915 |
| SphI | GCATGC | 1 cut(s) | 1927 |
| SseBI | AGGCCT | 1 cut(s) | 1126 |
| SsiI | CCGC | 5 cut(s) | 547, 899, 930, 1831, 2834 |
| SspDI | GGCGCC | 1 cut(s) | 374 |
| SspI | AATATT | 5 cut(s) | 1171, 1389, 1644, 2003, 2106 |
| StuI | AGGCCT | 1 cut(s) | 1126 |
| StyD4I | CCNGG | 3 cut(s) | 769, 784, 947 |
| StyI | CCWWGG | 3 cut(s) | 738, 1814, 2210 |
| TaaI | ACNGT | 8 cut(s) | 139, 170, 1108, 1337, 1583, 1682, 1706, 2513 |
| TaiI | ACGT | 1 cut(s) | 1620 |
| TaqI | TCGA | 4 cut(s) | 382, 1555, 2176, 2545 |
| TaqII | GACCGA | 2 cut(s) | 620, 1959 |
| TatI | WGTACW | 2 cut(s) | 1035, 2821 |
| TauI | GCSGC | 1 cut(s) | 550 |
| TfiI | GAWTC | 3 cut(s) | 301, 1966, 2291 |
| TscAI | CASTG | 2 cut(s) | 2353, 2518 |
| TseFI | GTSAC | 4 cut(s) | 67, 1343, 1743, 2975 |
| TseI | GCWGC | 4 cut(s) | 704, 1012, 1206, 2051 |
| Tsp45I | GTSAC | 4 cut(s) | 67, 1343, 1743, 2975 |
| TspGWI | ACGGA | 2 cut(s) | 660, 2512 |
| TspRI | CASTG | 2 cut(s) | 2353, 2518 |
| Tth111I | GACNNNGTC | 1 cut(s) | 630 |
| VpaK11BI | GGWCC | 2 cut(s) | 773, 1811 |
| VspI | ATTAAT | 2 cut(s) | 2235, 2463 |
| XapI | RAATTY | 6 cut(s) | 73, 599, 745, 1522, 1773, 2633 |
| XbaI | TCTAGA | 3 cut(s) | 199, 343, 674 |
| XceI | RCATGY | 7 cut(s) | 736, 978, 1034, 1042, 1927, 2250, 2819 |
| XmiI | GTMKAC | 1 cut(s) | 2205 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1152 |
| Zsp2I | ATGCAT | 3 cut(s) | 871, 1449, 1925 |