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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 47 |
| AfaI | GTAC | 1 cut(s) | 394 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 275 |
| AflII | CTTAAG | 1 cut(s) | 53 |
| AgsI | TTSAA | 4 cut(s) | 44, 109, 229, 412 |
| AjnI | CCWGG | 1 cut(s) | 385 |
| AluBI | AGCT | 1 cut(s) | 183 |
| AluI | AGCT | 1 cut(s) | 183 |
| ApeKI | GCWGC | 2 cut(s) | 96, 233 |
| ApoI | RAATTY | 1 cut(s) | 47 |
| AspS9I | GGNCC | 2 cut(s) | 132, 151 |
| AvaII | GGWCC | 2 cut(s) | 132, 151 |
| BbsI | GAAGAC | 1 cut(s) | 339 |
| BbvI | GCAGC | 2 cut(s) | 83, 220 |
| BccI | CCATC | 2 cut(s) | 220, 359 |
| BciT130I | CCWGG | 1 cut(s) | 387 |
| BfaI | CTAG | 1 cut(s) | 237 |
| BfmI | CTRYAG | 1 cut(s) | 184 |
| BfrI | CTTAAG | 1 cut(s) | 53 |
| BisI | GCNGC | 2 cut(s) | 97, 234 |
| BlsI | GCNGC | 2 cut(s) | 98, 235 |
| Bme1390I | CCNGG | 1 cut(s) | 387 |
| Bme18I | GGWCC | 2 cut(s) | 132, 151 |
| BmgT120I | GGNCC | 2 cut(s) | 132, 151 |
| BmrFI | CCNGG | 1 cut(s) | 387 |
| BpiI | GAAGAC | 1 cut(s) | 339 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 275 |
| Bse3DI | GCAATG | 1 cut(s) | 197 |
| BseBI | CCWGG | 1 cut(s) | 387 |
| BseGI | GGATG | 3 cut(s) | 295, 322, 370 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 275 |
| BseMI | GCAATG | 1 cut(s) | 197 |
| BseXI | GCAGC | 2 cut(s) | 83, 220 |
| BslFI | GGGAC | 1 cut(s) | 92 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 275 |
| BsmFI | GGGAC | 1 cut(s) | 92 |
| BsmI | GAATGC | 1 cut(s) | 235 |
| Bsp143I | GATC | 1 cut(s) | 17 |
| BspTI | CTTAAG | 1 cut(s) | 53 |
| BsrDI | GCAATG | 1 cut(s) | 197 |
| BssMI | GATC | 1 cut(s) | 17 |
| Bst2UI | CCWGG | 1 cut(s) | 387 |
| Bst4CI | ACNGT | 1 cut(s) | 256 |
| Bst6I | CTCTTC | 1 cut(s) | 279 |
| BstAFI | CTTAAG | 1 cut(s) | 53 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 96 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 273 |
| BstF5I | GGATG | 3 cut(s) | 295, 322, 370 |
| BstKTI | GATC | 1 cut(s) | 20 |
| BstMBI | GATC | 1 cut(s) | 17 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 96, 102, 111, 230 |
| BstNI | CCWGG | 1 cut(s) | 387 |
| BstSCI | CCNGG | 1 cut(s) | 385 |
| BstSFI | CTRYAG | 1 cut(s) | 184 |
| BstV1I | GCAGC | 2 cut(s) | 83, 220 |
| BstV2I | GAAGAC | 1 cut(s) | 339 |
| BtsCI | GGATG | 3 cut(s) | 295, 322, 370 |
| BtsI | GCAGTG | 1 cut(s) | 316 |
| BtsIMutI | CAGTG | 1 cut(s) | 316 |
| Cfr13I | GGNCC | 2 cut(s) | 132, 151 |
| Csp6I | GTAC | 1 cut(s) | 393 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 179, 214 |
| CviAII | CATG | 2 cut(s) | 203, 262 |
| CviJI | RGCY | 3 cut(s) | 68, 183, 376 |
| CviKI_1 | RGCY | 3 cut(s) | 68, 183, 376 |
| CviQI | GTAC | 1 cut(s) | 393 |
| DpnI | GATC | 1 cut(s) | 19 |
| DpnII | GATC | 1 cut(s) | 17 |
| Eam1104I | CTCTTC | 1 cut(s) | 279 |
| EarI | CTCTTC | 1 cut(s) | 279 |
| Eco47I | GGWCC | 2 cut(s) | 132, 151 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 273 |
| EcoRI | GAATTC | 1 cut(s) | 47 |
| EcoRII | CCWGG | 1 cut(s) | 385 |
| FaeI | CATG | 2 cut(s) | 206, 265 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 36, 68 |
| FaqI | GGGAC | 1 cut(s) | 92 |
| FatI | CATG | 2 cut(s) | 202, 261 |
| FauNDI | CATATG | 1 cut(s) | 92 |
| Fnu4HI | GCNGC | 2 cut(s) | 97, 234 |
| FokI | GGATG | 3 cut(s) | 302, 329, 377 |
| Fsp4HI | GCNGC | 2 cut(s) | 97, 234 |
| FspBI | CTAG | 1 cut(s) | 237 |
| GluI | GCNGC | 2 cut(s) | 97, 234 |
| Hin1II | CATG | 2 cut(s) | 206, 265 |
| HincII | GTYRAC | 1 cut(s) | 259 |
| HindII | GTYRAC | 1 cut(s) | 259 |
| HinfI | GANTC | 3 cut(s) | 245, 265, 335 |
| Hpy166II | GTNNAC | 1 cut(s) | 259 |
| Hpy188I | TCNGA | 2 cut(s) | 33, 250 |
| Hpy188III | TCNNGA | 1 cut(s) | 269 |
| Hpy8I | GTNNAC | 1 cut(s) | 259 |
| HpyAV | CCTTC | 1 cut(s) | 290 |
| HpyCH4III | ACNGT | 1 cut(s) | 256 |
| HpyCH4V | TGCA | 1 cut(s) | 62 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 96, 102, 111, 230 |
| Hsp92II | CATG | 2 cut(s) | 206, 265 |
| Kzo9I | GATC | 1 cut(s) | 17 |
| LpnPI | CCDG | 3 cut(s) | 282, 372, 399 |
| Lsp1109I | GCAGC | 2 cut(s) | 83, 220 |
| MaeI | CTAG | 1 cut(s) | 237 |
| MalI | GATC | 1 cut(s) | 19 |
| MboI | GATC | 1 cut(s) | 17 |
| MboII | GAAGA | 5 cut(s) | 20, 56, 296, 305, 344 |
| MluCI | AATT | 2 cut(s) | 47, 324 |
| MlyI | GAGTC | 1 cut(s) | 329 |
| MnlI | CCTC | 8 cut(s) | 69, 233, 280, 298, 307, 313, 355, 387 |
| MseI | TTAA | 3 cut(s) | 54, 117, 165 |
| MspCI | CTTAAG | 1 cut(s) | 53 |
| MspR9I | CCNGG | 1 cut(s) | 387 |
| Mva1269I | GAATGC | 1 cut(s) | 235 |
| MvaI | CCWGG | 1 cut(s) | 387 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 96, 102, 111, 230 |
| NdeI | CATATG | 1 cut(s) | 92 |
| NdeII | GATC | 1 cut(s) | 17 |
| NlaIII | CATG | 2 cut(s) | 206, 265 |
| PctI | GAATGC | 1 cut(s) | 235 |
| PfeI | GAWTC | 2 cut(s) | 245, 265 |
| PkrI | GCNGC | 2 cut(s) | 98, 235 |
| PleI | GAGTC | 1 cut(s) | 329 |
| PpsI | GAGTC | 1 cut(s) | 329 |
| Psp6I | CCWGG | 1 cut(s) | 385 |
| PspGI | CCWGG | 1 cut(s) | 385 |
| PspPI | GGNCC | 2 cut(s) | 132, 151 |
| RsaI | GTAC | 1 cut(s) | 394 |
| RsaNI | GTAC | 1 cut(s) | 393 |
| SaqAI | TTAA | 3 cut(s) | 54, 117, 165 |
| SatI | GCNGC | 2 cut(s) | 97, 234 |
| Sau3AI | GATC | 1 cut(s) | 17 |
| Sau96I | GGNCC | 2 cut(s) | 132, 151 |
| SchI | GAGTC | 1 cut(s) | 329 |
| ScrFI | CCNGG | 1 cut(s) | 387 |
| SetI | ASST | 2 cut(s) | 185, 301 |
| SfcI | CTRYAG | 1 cut(s) | 184 |
| SinI | GGWCC | 2 cut(s) | 132, 151 |
| SmlI | CTYRAG | 1 cut(s) | 53 |
| SmoI | CTYRAG | 1 cut(s) | 53 |
| Sse9I | AATT | 2 cut(s) | 47, 324 |
| SspMI | CTAG | 1 cut(s) | 237 |
| StyD4I | CCNGG | 1 cut(s) | 385 |
| TaaI | ACNGT | 1 cut(s) | 256 |
| TaqI | TCGA | 1 cut(s) | 338 |
| TasI | AATT | 2 cut(s) | 47, 324 |
| TfiI | GAWTC | 2 cut(s) | 245, 265 |
| Tru1I | TTAA | 3 cut(s) | 54, 117, 165 |
| Tru9I | TTAA | 3 cut(s) | 54, 117, 165 |
| TscAI | CASTG | 1 cut(s) | 316 |
| TseI | GCWGC | 2 cut(s) | 96, 233 |
| TspDTI | ATGAA | 4 cut(s) | 17, 278, 306, 365 |
| TspRI | CASTG | 1 cut(s) | 316 |
| Vha464I | CTTAAG | 1 cut(s) | 53 |
| VpaK11BI | GGWCC | 2 cut(s) | 132, 151 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 273 |
| XapI | RAATTY | 1 cut(s) | 47 |
| XspI | CTAG | 1 cut(s) | 237 |