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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 529 |
| AciI | CCGC | 1 cut(s) | 529 |
| AclWI | GGATC | 1 cut(s) | 389 |
| AcoI | YGGCCR | 1 cut(s) | 552 |
| AfaI | GTAC | 4 cut(s) | 119, 155, 495, 536 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 514, 620 |
| AflIII | ACRYGT | 2 cut(s) | 18, 537 |
| AgeI | ACCGGT | 1 cut(s) | 70 |
| AgsI | TTSAA | 1 cut(s) | 182 |
| AluBI | AGCT | 4 cut(s) | 92, 236, 460, 560 |
| AluI | AGCT | 4 cut(s) | 92, 236, 460, 560 |
| Alw26I | GTCTC | 1 cut(s) | 209 |
| AlwI | GGATC | 1 cut(s) | 389 |
| AoxI | GGCC | 3 cut(s) | 3, 418, 552 |
| ApeKI | GCWGC | 2 cut(s) | 76, 271 |
| AsiGI | ACCGGT | 1 cut(s) | 70 |
| AspLEI | GCGC | 1 cut(s) | 47 |
| AspS9I | GGNCC | 1 cut(s) | 310 |
| AsuC2I | CCSGG | 1 cut(s) | 159 |
| AvaII | GGWCC | 1 cut(s) | 310 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 485, 518 |
| BbsI | GAAGAC | 3 cut(s) | 176, 281, 534 |
| BbvI | GCAGC | 2 cut(s) | 88, 258 |
| BccI | CCATC | 2 cut(s) | 184, 561 |
| BceAI | ACGGC | 1 cut(s) | 567 |
| BciVI | GTATCC | 1 cut(s) | 329 |
| BcnI | CCSGG | 1 cut(s) | 159 |
| BcoDI | GTCTC | 1 cut(s) | 209 |
| BfaI | CTAG | 2 cut(s) | 87, 105 |
| BfmI | CTRYAG | 1 cut(s) | 468 |
| BfuI | GTATCC | 1 cut(s) | 329 |
| BglII | AGATCT | 2 cut(s) | 328, 351 |
| BisI | GCNGC | 2 cut(s) | 77, 272 |
| BlsI | GCNGC | 2 cut(s) | 78, 273 |
| Bme1390I | CCNGG | 1 cut(s) | 159 |
| Bme18I | GGWCC | 1 cut(s) | 310 |
| BmgT120I | GGNCC | 1 cut(s) | 310 |
| BmrFI | CCNGG | 1 cut(s) | 159 |
| BmsI | GCATC | 1 cut(s) | 258 |
| BoxI | GACNNNNGTC | 1 cut(s) | 429 |
| BpiI | GAAGAC | 3 cut(s) | 176, 281, 534 |
| BpmI | CTGGAG | 1 cut(s) | 545 |
| BpuEI | CTTGAG | 1 cut(s) | 33 |
| BpuMI | CCSGG | 1 cut(s) | 159 |
| BsaBI | GATNNNNATC | 1 cut(s) | 246 |
| BsaJI | CCNNGG | 3 cut(s) | 157, 277, 412 |
| BsaWI | WCCGGW | 2 cut(s) | 70, 433 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 518, 548 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 514, 620 |
| Bse118I | RCCGGY | 1 cut(s) | 70 |
| Bse3DI | GCAATG | 1 cut(s) | 99 |
| Bse8I | GATNNNNATC | 1 cut(s) | 246 |
| BseDI | CCNNGG | 3 cut(s) | 157, 277, 412 |
| BseJI | GATNNNNATC | 1 cut(s) | 246 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 514, 620 |
| BseMI | GCAATG | 1 cut(s) | 99 |
| BseX3I | CGGCCG | 1 cut(s) | 552 |
| BseXI | GCAGC | 2 cut(s) | 88, 258 |
| BsgI | GTGCAG | 1 cut(s) | 95 |
| Bsh1285I | CGRYCG | 2 cut(s) | 228, 555 |
| BshFI | GGCC | 3 cut(s) | 5, 420, 554 |
| BshTI | ACCGGT | 1 cut(s) | 70 |
| BsiEI | CGRYCG | 2 cut(s) | 228, 555 |
| BsiSI | CCGG | 3 cut(s) | 71, 159, 434 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 514, 620 |
| BsmAI | GTCTC | 1 cut(s) | 209 |
| BsmI | GAATGC | 1 cut(s) | 375 |
| BsnI | GGCC | 3 cut(s) | 5, 420, 554 |
| Bsp1407I | TGTACA | 1 cut(s) | 534 |
| Bsp143I | GATC | 3 cut(s) | 328, 351, 394 |
| BspACI | CCGC | 1 cut(s) | 529 |
| BspANI | GGCC | 3 cut(s) | 5, 420, 554 |
| BspMAI | CTGCAG | 1 cut(s) | 472 |
| BspPI | GGATC | 1 cut(s) | 389 |
| BsrBI | CCGCTC | 1 cut(s) | 529 |
| BsrDI | GCAATG | 1 cut(s) | 99 |
| BsrFI | RCCGGY | 1 cut(s) | 70 |
| BsrGI | TGTACA | 1 cut(s) | 534 |
| BssAI | RCCGGY | 1 cut(s) | 70 |
| BssECI | CCNNGG | 3 cut(s) | 157, 277, 412 |
| BssMI | GATC | 3 cut(s) | 328, 351, 394 |
| BssT1I | CCWWGG | 1 cut(s) | 412 |
| Bst4CI | ACNGT | 4 cut(s) | 57, 175, 229, 281 |
| Bst6I | CTCTTC | 1 cut(s) | 386 |
| BstAUI | TGTACA | 1 cut(s) | 534 |
| BstC8I | GCNNGC | 3 cut(s) | 132, 361, 573 |
| BstDSI | CCRYGG | 1 cut(s) | 277 |
| BstHHI | GCGC | 1 cut(s) | 47 |
| BstKTI | GATC | 3 cut(s) | 331, 354, 397 |
| BstMAI | GTCTC | 1 cut(s) | 209 |
| BstMBI | GATC | 3 cut(s) | 328, 351, 394 |
| BstMCI | CGRYCG | 2 cut(s) | 228, 555 |
| BstNSI | RCATGY | 4 cut(s) | 22, 363, 432, 541 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 429 |
| BstSCI | CCNGG | 1 cut(s) | 157 |
| BstSFI | CTRYAG | 1 cut(s) | 468 |
| BstV1I | GCAGC | 2 cut(s) | 88, 258 |
| BstV2I | GAAGAC | 3 cut(s) | 176, 281, 534 |
| BstX2I | RGATCY | 3 cut(s) | 328, 351, 394 |
| BstYI | RGATCY | 3 cut(s) | 328, 351, 394 |
| BstZI | CGGCCG | 1 cut(s) | 552 |
| BsuI | GTATCC | 1 cut(s) | 329 |
| BsuRI | GGCC | 3 cut(s) | 5, 420, 554 |
| BtgI | CCRYGG | 1 cut(s) | 277 |
| BtsI | GCAGTG | 1 cut(s) | 258 |
| BtsIMutI | CAGTG | 2 cut(s) | 258, 444 |
| Cac8I | GCNNGC | 3 cut(s) | 132, 361, 573 |
| CfoI | GCGC | 1 cut(s) | 47 |
| Cfr10I | RCCGGY | 1 cut(s) | 70 |
| Cfr13I | GGNCC | 1 cut(s) | 310 |
| CseI | GACGC | 1 cut(s) | 434 |
| Csp6I | GTAC | 4 cut(s) | 118, 154, 494, 535 |
| CspAI | ACCGGT | 1 cut(s) | 70 |
| CviAII | CATG | 5 cut(s) | 19, 360, 429, 538, 590 |
| CviQI | GTAC | 4 cut(s) | 118, 154, 494, 535 |
| DpnI | GATC | 3 cut(s) | 330, 353, 396 |
| DpnII | GATC | 3 cut(s) | 328, 351, 394 |
| EaeI | YGGCCR | 1 cut(s) | 552 |
| EagI | CGGCCG | 1 cut(s) | 552 |
| Eam1104I | CTCTTC | 1 cut(s) | 386 |
| EarI | CTCTTC | 1 cut(s) | 386 |
| EclXI | CGGCCG | 1 cut(s) | 552 |
| Eco130I | CCWWGG | 1 cut(s) | 412 |
| Eco47I | GGWCC | 1 cut(s) | 310 |
| Eco52I | CGGCCG | 1 cut(s) | 552 |
| EcoT14I | CCWWGG | 1 cut(s) | 412 |
| EcoT22I | ATGCAT | 1 cut(s) | 361 |
| ErhI | CCWWGG | 1 cut(s) | 412 |
| FaeI | CATG | 5 cut(s) | 22, 363, 432, 541, 593 |
| FatI | CATG | 5 cut(s) | 18, 359, 428, 537, 589 |
| Fnu4HI | GCNGC | 2 cut(s) | 77, 272 |
| Fsp4HI | GCNGC | 2 cut(s) | 77, 272 |
| FspBI | CTAG | 2 cut(s) | 87, 105 |
| GlaI | GCGC | 1 cut(s) | 46 |
| GluI | GCNGC | 2 cut(s) | 77, 272 |
| GsuI | CTGGAG | 1 cut(s) | 545 |
| HaeIII | GGCC | 3 cut(s) | 5, 420, 554 |
| HapII | CCGG | 3 cut(s) | 71, 159, 434 |
| HgaI | GACGC | 1 cut(s) | 434 |
| HhaI | GCGC | 1 cut(s) | 47 |
| Hin1II | CATG | 5 cut(s) | 22, 363, 432, 541, 593 |
| Hin6I | GCGC | 1 cut(s) | 45 |
| HinP1I | GCGC | 1 cut(s) | 45 |
| HincII | GTYRAC | 2 cut(s) | 97, 112 |
| HindII | GTYRAC | 2 cut(s) | 97, 112 |
| HinfI | GANTC | 1 cut(s) | 463 |
| HpaII | CCGG | 3 cut(s) | 71, 159, 434 |
| Hpy166II | GTNNAC | 3 cut(s) | 97, 112, 154 |
| Hpy188I | TCNGA | 4 cut(s) | 168, 314, 670, 677 |
| Hpy188III | TCNNGA | 4 cut(s) | 179, 322, 349, 398 |
| Hpy8I | GTNNAC | 3 cut(s) | 97, 112, 154 |
| HpyAV | CCTTC | 3 cut(s) | 91, 395, 484 |
| HpyCH4III | ACNGT | 4 cut(s) | 57, 175, 229, 281 |
| HpyCH4IV | ACGT | 2 cut(s) | 195, 665 |
| HpyCH4V | TGCA | 6 cut(s) | 76, 359, 363, 375, 470, 589 |
| HpySE526I | ACGT | 2 cut(s) | 195, 665 |
| Hsp92II | CATG | 5 cut(s) | 22, 363, 432, 541, 593 |
| HspAI | GCGC | 1 cut(s) | 45 |
| Kzo9I | GATC | 3 cut(s) | 328, 351, 394 |
| LmnI | GCTCC | 1 cut(s) | 526 |
| Lsp1109I | GCAGC | 2 cut(s) | 88, 258 |
| LweI | GCATC | 1 cut(s) | 258 |
| MaeI | CTAG | 2 cut(s) | 87, 105 |
| MaeII | ACGT | 2 cut(s) | 195, 665 |
| MalI | GATC | 3 cut(s) | 330, 353, 396 |
| MbiI | CCGCTC | 1 cut(s) | 529 |
| MboI | GATC | 3 cut(s) | 328, 351, 394 |
| MboII | GAAGA | 6 cut(s) | 181, 214, 281, 373, 534, 608 |
| MflI | RGATCY | 3 cut(s) | 328, 351, 394 |
| MluCI | AATT | 1 cut(s) | 584 |
| MlyI | GAGTC | 1 cut(s) | 457 |
| MmeI | TCCRAC | 1 cut(s) | 163 |
| MnlI | CCTC | 4 cut(s) | 507, 619, 664, 666 |
| Mph1103I | ATGCAT | 1 cut(s) | 361 |
| MseI | TTAA | 1 cut(s) | 207 |
| MspI | CCGG | 3 cut(s) | 71, 159, 434 |
| MspR9I | CCNGG | 1 cut(s) | 159 |
| Mva1269I | GAATGC | 1 cut(s) | 375 |
| NciI | CCSGG | 1 cut(s) | 159 |
| NdeII | GATC | 3 cut(s) | 328, 351, 394 |
| NlaIII | CATG | 5 cut(s) | 22, 363, 432, 541, 593 |
| NsiI | ATGCAT | 1 cut(s) | 361 |
| NspI | RCATGY | 4 cut(s) | 22, 363, 432, 541 |
| PaeI | GCATGC | 1 cut(s) | 363 |
| PciI | ACATGT | 2 cut(s) | 18, 537 |
| PctI | GAATGC | 1 cut(s) | 375 |
| PinAI | ACCGGT | 1 cut(s) | 70 |
| PkrI | GCNGC | 2 cut(s) | 78, 273 |
| PleI | GAGTC | 1 cut(s) | 457 |
| PpsI | GAGTC | 1 cut(s) | 457 |
| PscI | ACATGT | 2 cut(s) | 18, 537 |
| PshAI | GACNNNNGTC | 1 cut(s) | 429 |
| PspPI | GGNCC | 1 cut(s) | 310 |
| PstI | CTGCAG | 1 cut(s) | 472 |
| PsuI | RGATCY | 3 cut(s) | 328, 351, 394 |
| RsaI | GTAC | 4 cut(s) | 119, 155, 495, 536 |
| RsaNI | GTAC | 4 cut(s) | 118, 154, 494, 535 |
| SaqAI | TTAA | 1 cut(s) | 207 |
| SatI | GCNGC | 2 cut(s) | 77, 272 |
| Sau3AI | GATC | 3 cut(s) | 328, 351, 394 |
| Sau96I | GGNCC | 1 cut(s) | 310 |
| SchI | GAGTC | 1 cut(s) | 457 |
| ScrFI | CCNGG | 1 cut(s) | 159 |
| SfaNI | GCATC | 1 cut(s) | 258 |
| SfcI | CTRYAG | 1 cut(s) | 468 |
| SinI | GGWCC | 1 cut(s) | 310 |
| SmlI | CTYRAG | 1 cut(s) | 48 |
| SmoI | CTYRAG | 1 cut(s) | 48 |
| SphI | GCATGC | 1 cut(s) | 363 |
| Sse9I | AATT | 1 cut(s) | 584 |
| SsiI | CCGC | 1 cut(s) | 529 |
| SspMI | CTAG | 2 cut(s) | 87, 105 |
| StyD4I | CCNGG | 1 cut(s) | 157 |
| StyI | CCWWGG | 1 cut(s) | 412 |
| TaaI | ACNGT | 4 cut(s) | 57, 175, 229, 281 |
| TaiI | ACGT | 2 cut(s) | 198, 668 |
| TaqI | TCGA | 2 cut(s) | 224, 266 |
| TasI | AATT | 1 cut(s) | 584 |
| TatI | WGTACW | 2 cut(s) | 117, 534 |
| Tru1I | TTAA | 1 cut(s) | 207 |
| Tru9I | TTAA | 1 cut(s) | 207 |
| TscAI | CASTG | 2 cut(s) | 265, 451 |
| TseI | GCWGC | 2 cut(s) | 76, 271 |
| TspDTI | ATGAA | 1 cut(s) | 215 |
| TspRI | CASTG | 2 cut(s) | 265, 451 |
| VpaK11BI | GGWCC | 1 cut(s) | 310 |
| XceI | RCATGY | 4 cut(s) | 22, 363, 432, 541 |
| XspI | CTAG | 2 cut(s) | 87, 105 |
| Zsp2I | ATGCAT | 1 cut(s) | 361 |