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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 383 |
| Acc16I | TGCGCA | 1 cut(s) | 465 |
| Acc36I | ACCTGC | 1 cut(s) | 383 |
| Acc65I | GGTACC | 1 cut(s) | 622 |
| AccB1I | GGYRCC | 3 cut(s) | 206, 622, 807 |
| AccI | GTMKAC | 1 cut(s) | 124 |
| AclWI | GGATC | 3 cut(s) | 148, 161, 719 |
| AcsI | RAATTY | 2 cut(s) | 591, 756 |
| AcyI | GRCGYC | 1 cut(s) | 207 |
| AfaI | GTAC | 2 cut(s) | 20, 624 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 150, 203 |
| AflIII | ACRYGT | 1 cut(s) | 745 |
| AgeI | ACCGGT | 1 cut(s) | 625 |
| AgsI | TTSAA | 7 cut(s) | 34, 95, 134, 316, 454, 488, 863 |
| AleI | CACNNNNGTG | 1 cut(s) | 255 |
| AluBI | AGCT | 4 cut(s) | 238, 656, 850, 939 |
| AluI | AGCT | 4 cut(s) | 238, 656, 850, 939 |
| Alw26I | GTCTC | 2 cut(s) | 813, 899 |
| AlwI | GGATC | 3 cut(s) | 148, 161, 719 |
| AoxI | GGCC | 1 cut(s) | 194 |
| ApeKI | GCWGC | 3 cut(s) | 189, 235, 871 |
| ApoI | RAATTY | 2 cut(s) | 591, 756 |
| AsiGI | ACCGGT | 1 cut(s) | 625 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 29 |
| Asp718I | GGTACC | 1 cut(s) | 622 |
| AspLEI | GCGC | 3 cut(s) | 209, 466, 871 |
| AspS9I | GGNCC | 2 cut(s) | 195, 412 |
| AsuC2I | CCSGG | 1 cut(s) | 812 |
| AsuHPI | GGTGA | 2 cut(s) | 55, 938 |
| AsuNHI | GCTAGC | 1 cut(s) | 388 |
| AvaII | GGWCC | 1 cut(s) | 412 |
| BaeGI | GKGCMC | 1 cut(s) | 812 |
| BamHI | GGATCC | 1 cut(s) | 153 |
| BanI | GGYRCC | 3 cut(s) | 206, 622, 807 |
| BbsI | GAAGAC | 1 cut(s) | 777 |
| BbvI | GCAGC | 3 cut(s) | 176, 247, 883 |
| BccI | CCATC | 3 cut(s) | 33, 221, 904 |
| BceAI | ACGGC | 1 cut(s) | 592 |
| BciVI | GTATCC | 2 cut(s) | 15, 576 |
| BclI | TGATCA | 1 cut(s) | 784 |
| BcnI | CCSGG | 1 cut(s) | 812 |
| BcoDI | GTCTC | 2 cut(s) | 813, 899 |
| BfaI | CTAG | 7 cut(s) | 239, 245, 389, 531, 657, 834, 851 |
| BfmI | CTRYAG | 1 cut(s) | 190 |
| BfoI | RGCGCY | 1 cut(s) | 210 |
| BfuAI | ACCTGC | 1 cut(s) | 383 |
| BfuI | GTATCC | 2 cut(s) | 15, 576 |
| BisI | GCNGC | 3 cut(s) | 190, 236, 872 |
| BlsI | GCNGC | 3 cut(s) | 191, 237, 873 |
| Bme1390I | CCNGG | 1 cut(s) | 812 |
| Bme18I | GGWCC | 1 cut(s) | 412 |
| BmgT120I | GGNCC | 2 cut(s) | 195, 412 |
| BmiI | GGNNCC | 5 cut(s) | 155, 208, 414, 624, 809 |
| BmrFI | CCNGG | 1 cut(s) | 812 |
| BmsI | GCATC | 3 cut(s) | 127, 268, 672 |
| BmtI | GCTAGC | 1 cut(s) | 392 |
| BpiI | GAAGAC | 1 cut(s) | 777 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 98, 130 |
| BpuMI | CCSGG | 1 cut(s) | 812 |
| BsaHI | GRCGYC | 1 cut(s) | 207 |
| BsaJI | CCNNGG | 1 cut(s) | 826 |
| BsaWI | WCCGGW | 1 cut(s) | 625 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 150, 203 |
| Bse118I | RCCGGY | 1 cut(s) | 625 |
| Bse3DI | GCAATG | 2 cut(s) | 72, 525 |
| BseDI | CCNNGG | 1 cut(s) | 826 |
| BseGI | GGATG | 1 cut(s) | 44 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 150, 203 |
| BseMI | GCAATG | 2 cut(s) | 72, 525 |
| BseMII | CTCAG | 3 cut(s) | 54, 129, 288 |
| BseSI | GKGCMC | 1 cut(s) | 812 |
| BseXI | GCAGC | 3 cut(s) | 176, 247, 883 |
| BshFI | GGCC | 1 cut(s) | 196 |
| BshNI | GGYRCC | 3 cut(s) | 206, 622, 807 |
| BshTI | ACCGGT | 1 cut(s) | 625 |
| BsiSI | CCGG | 2 cut(s) | 626, 812 |
| BslFI | GGGAC | 1 cut(s) | 398 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 150, 203 |
| BsmAI | GTCTC | 2 cut(s) | 813, 899 |
| BsmFI | GGGAC | 1 cut(s) | 398 |
| BsnI | GGCC | 1 cut(s) | 196 |
| Bsp1286I | GDGCHC | 1 cut(s) | 812 |
| Bsp143I | GATC | 4 cut(s) | 153, 479, 724, 784 |
| BspANI | GGCC | 1 cut(s) | 196 |
| BspCNI | CTCAG | 3 cut(s) | 55, 128, 289 |
| BspLI | GGNNCC | 5 cut(s) | 155, 208, 414, 624, 809 |
| BspMAI | CTGCAG | 1 cut(s) | 194 |
| BspMI | ACCTGC | 1 cut(s) | 383 |
| BspOI | GCTAGC | 1 cut(s) | 392 |
| BspPI | GGATC | 3 cut(s) | 148, 161, 719 |
| BspQI | GCTCTTC | 1 cut(s) | 840 |
| BspT107I | GGYRCC | 3 cut(s) | 206, 622, 807 |
| BsrDI | GCAATG | 2 cut(s) | 72, 525 |
| BsrFI | RCCGGY | 1 cut(s) | 625 |
| BssAI | RCCGGY | 1 cut(s) | 625 |
| BssECI | CCNNGG | 1 cut(s) | 826 |
| BssMI | GATC | 4 cut(s) | 153, 479, 724, 784 |
| BssNAI | GTATAC | 1 cut(s) | 125 |
| BssNI | GRCGYC | 1 cut(s) | 207 |
| BssT1I | CCWWGG | 1 cut(s) | 826 |
| Bst1107I | GTATAC | 1 cut(s) | 125 |
| Bst4CI | ACNGT | 3 cut(s) | 57, 223, 494 |
| Bst6I | CTCTTC | 2 cut(s) | 90, 840 |
| BstACI | GRCGYC | 1 cut(s) | 207 |
| BstC8I | GCNNGC | 2 cut(s) | 194, 390 |
| BstDEI | CTNAG | 5 cut(s) | 63, 78, 115, 297, 736 |
| BstF5I | GGATG | 1 cut(s) | 44 |
| BstH2I | RGCGCY | 1 cut(s) | 210 |
| BstHHI | GCGC | 3 cut(s) | 209, 466, 871 |
| BstKTI | GATC | 4 cut(s) | 156, 482, 727, 787 |
| BstMAI | GTCTC | 2 cut(s) | 813, 899 |
| BstMBI | GATC | 4 cut(s) | 153, 479, 724, 784 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 362 |
| BstNSI | RCATGY | 1 cut(s) | 749 |
| BstSCI | CCNGG | 1 cut(s) | 810 |
| BstSFI | CTRYAG | 1 cut(s) | 190 |
| BstSLI | GKGCMC | 1 cut(s) | 812 |
| BstV1I | GCAGC | 3 cut(s) | 176, 247, 883 |
| BstV2I | GAAGAC | 1 cut(s) | 777 |
| BstX2I | RGATCY | 1 cut(s) | 153 |
| BstYI | RGATCY | 1 cut(s) | 153 |
| BstZ17I | GTATAC | 1 cut(s) | 125 |
| BsuI | GTATCC | 2 cut(s) | 15, 576 |
| BsuRI | GGCC | 1 cut(s) | 196 |
| BtgZI | GCGATG | 1 cut(s) | 972 |
| BtsCI | GGATG | 1 cut(s) | 44 |
| BtsIMutI | CAGTG | 3 cut(s) | 294, 499, 801 |
| BveI | ACCTGC | 1 cut(s) | 383 |
| Cac8I | GCNNGC | 2 cut(s) | 194, 390 |
| CfoI | GCGC | 3 cut(s) | 209, 466, 871 |
| Cfr10I | RCCGGY | 1 cut(s) | 625 |
| Cfr13I | GGNCC | 2 cut(s) | 195, 412 |
| Csp6I | GTAC | 2 cut(s) | 19, 623 |
| CspAI | ACCGGT | 1 cut(s) | 625 |
| CviAII | CATG | 4 cut(s) | 22, 434, 467, 746 |
| CviQI | GTAC | 2 cut(s) | 19, 623 |
| DdeI | CTNAG | 5 cut(s) | 63, 78, 115, 297, 736 |
| DinI | GGCGCC | 1 cut(s) | 208 |
| DpnI | GATC | 4 cut(s) | 155, 481, 726, 786 |
| DpnII | GATC | 4 cut(s) | 153, 479, 724, 784 |
| DraI | TTTAAA | 1 cut(s) | 720 |
| Eam1104I | CTCTTC | 2 cut(s) | 90, 840 |
| EarI | CTCTTC | 2 cut(s) | 90, 840 |
| Eco130I | CCWWGG | 1 cut(s) | 826 |
| Eco32I | GATATC | 1 cut(s) | 431 |
| Eco47I | GGWCC | 1 cut(s) | 412 |
| EcoO109I | RGGNCCY | 2 cut(s) | 195, 412 |
| EcoRV | GATATC | 1 cut(s) | 431 |
| EcoT14I | CCWWGG | 1 cut(s) | 826 |
| EgeI | GGCGCC | 1 cut(s) | 208 |
| EheI | GGCGCC | 1 cut(s) | 208 |
| ErhI | CCWWGG | 1 cut(s) | 826 |
| FaeI | CATG | 4 cut(s) | 25, 437, 470, 749 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 762, 794 |
| FaqI | GGGAC | 1 cut(s) | 398 |
| FatI | CATG | 4 cut(s) | 21, 433, 466, 745 |
| FauNDI | CATATG | 1 cut(s) | 303 |
| FbaI | TGATCA | 1 cut(s) | 784 |
| FblI | GTMKAC | 1 cut(s) | 124 |
| Fnu4HI | GCNGC | 3 cut(s) | 190, 236, 872 |
| FokI | GGATG | 1 cut(s) | 51 |
| Fsp4HI | GCNGC | 3 cut(s) | 190, 236, 872 |
| FspBI | CTAG | 7 cut(s) | 239, 245, 389, 531, 657, 834, 851 |
| FspI | TGCGCA | 1 cut(s) | 465 |
| GlaI | GCGC | 3 cut(s) | 208, 465, 870 |
| GluI | GCNGC | 3 cut(s) | 190, 236, 872 |
| HaeII | RGCGCY | 1 cut(s) | 210 |
| HaeIII | GGCC | 1 cut(s) | 196 |
| HapII | CCGG | 2 cut(s) | 626, 812 |
| HhaI | GCGC | 3 cut(s) | 209, 466, 871 |
| Hin1I | GRCGYC | 1 cut(s) | 207 |
| Hin1II | CATG | 4 cut(s) | 25, 437, 470, 749 |
| Hin6I | GCGC | 3 cut(s) | 207, 464, 869 |
| HinP1I | GCGC | 3 cut(s) | 207, 464, 869 |
| HinfI | GANTC | 4 cut(s) | 49, 177, 226, 650 |
| HpaII | CCGG | 2 cut(s) | 626, 812 |
| HphI | GGTGA | 2 cut(s) | 55, 938 |
| Hpy166II | GTNNAC | 3 cut(s) | 125, 398, 604 |
| Hpy188I | TCNGA | 3 cut(s) | 64, 118, 373 |
| Hpy188III | TCNNGA | 3 cut(s) | 131, 174, 950 |
| Hpy8I | GTNNAC | 3 cut(s) | 125, 398, 604 |
| HpyAV | CCTTC | 2 cut(s) | 19, 956 |
| HpyCH4III | ACNGT | 3 cut(s) | 57, 223, 494 |
| HpyCH4IV | ACGT | 1 cut(s) | 121 |
| HpyCH4V | TGCA | 8 cut(s) | 72, 192, 265, 281, 338, 518, 523, 536 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 362 |
| HpyF3I | CTNAG | 5 cut(s) | 63, 78, 115, 297, 736 |
| HpySE526I | ACGT | 1 cut(s) | 121 |
| Hsp92I | GRCGYC | 1 cut(s) | 207 |
| Hsp92II | CATG | 4 cut(s) | 25, 437, 470, 749 |
| HspAI | GCGC | 3 cut(s) | 207, 464, 869 |
| KasI | GGCGCC | 1 cut(s) | 206 |
| KpnI | GGTACC | 1 cut(s) | 626 |
| Ksp22I | TGATCA | 1 cut(s) | 784 |
| Kzo9I | GATC | 4 cut(s) | 153, 479, 724, 784 |
| LguI | GCTCTTC | 1 cut(s) | 840 |
| LmnI | GCTCC | 1 cut(s) | 944 |
| LpnPI | CCDG | 7 cut(s) | 159, 178, 189, 378, 565, 639, 825 |
| Lsp1109I | GCAGC | 3 cut(s) | 176, 247, 883 |
| LweI | GCATC | 3 cut(s) | 127, 268, 672 |
| MaeI | CTAG | 7 cut(s) | 239, 245, 389, 531, 657, 834, 851 |
| MaeII | ACGT | 1 cut(s) | 121 |
| MalI | GATC | 4 cut(s) | 155, 481, 726, 786 |
| MboI | GATC | 4 cut(s) | 153, 479, 724, 784 |
| MboII | GAAGA | 6 cut(s) | 107, 146, 287, 782, 857, 866 |
| MfeI | CAATTG | 1 cut(s) | 102 |
| MflI | RGATCY | 1 cut(s) | 153 |
| MhlI | GDGCHC | 1 cut(s) | 812 |
| MluCI | AATT | 6 cut(s) | 102, 308, 483, 591, 756, 858 |
| Mly113I | GGCGCC | 1 cut(s) | 207 |
| MlyI | GAGTC | 2 cut(s) | 171, 659 |
| MnlI | CCTC | 5 cut(s) | 9, 39, 91, 403, 592 |
| MroXI | GAANNNNTTC | 1 cut(s) | 29 |
| MseI | TTAA | 5 cut(s) | 182, 320, 438, 696, 719 |
| MslI | CAYNNNNRTG | 5 cut(s) | 26, 221, 255, 438, 720 |
| MspI | CCGG | 2 cut(s) | 626, 812 |
| MspR9I | CCNGG | 1 cut(s) | 812 |
| MunI | CAATTG | 1 cut(s) | 102 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 362 |
| NarI | GGCGCC | 1 cut(s) | 207 |
| NciI | CCSGG | 1 cut(s) | 812 |
| NdeI | CATATG | 1 cut(s) | 303 |
| NdeII | GATC | 4 cut(s) | 153, 479, 724, 784 |
| NheI | GCTAGC | 1 cut(s) | 388 |
| NlaIII | CATG | 4 cut(s) | 25, 437, 470, 749 |
| NlaIV | GGNNCC | 5 cut(s) | 155, 208, 414, 624, 809 |
| NsbI | TGCGCA | 1 cut(s) | 465 |
| NspI | RCATGY | 1 cut(s) | 749 |
| OliI | CACNNNNGTG | 1 cut(s) | 255 |
| PaqCI | CACCTGC | 1 cut(s) | 383 |
| PciI | ACATGT | 1 cut(s) | 745 |
| PciSI | GCTCTTC | 1 cut(s) | 840 |
| PdmI | GAANNNNTTC | 1 cut(s) | 29 |
| PfeI | GAWTC | 2 cut(s) | 49, 226 |
| PinAI | ACCGGT | 1 cut(s) | 625 |
| PkrI | GCNGC | 3 cut(s) | 191, 237, 873 |
| PleI | GAGTC | 2 cut(s) | 171, 658 |
| PluTI | GGCGCC | 1 cut(s) | 210 |
| PpsI | GAGTC | 2 cut(s) | 171, 658 |
| PpuMI | RGGWCCY | 1 cut(s) | 412 |
| PscI | ACATGT | 1 cut(s) | 745 |
| Psp5II | RGGWCCY | 1 cut(s) | 412 |
| PspN4I | GGNNCC | 5 cut(s) | 155, 208, 414, 624, 809 |
| PspPI | GGNCC | 2 cut(s) | 195, 412 |
| PspPPI | RGGWCCY | 1 cut(s) | 412 |
| PstI | CTGCAG | 1 cut(s) | 194 |
| PsuI | RGATCY | 1 cut(s) | 153 |
| RsaI | GTAC | 2 cut(s) | 20, 624 |
| RsaNI | GTAC | 2 cut(s) | 19, 623 |
| RseI | CAYNNNNRTG | 5 cut(s) | 26, 221, 255, 438, 720 |
| SapI | GCTCTTC | 1 cut(s) | 840 |
| SaqAI | TTAA | 5 cut(s) | 182, 320, 438, 696, 719 |
| SatI | GCNGC | 3 cut(s) | 190, 236, 872 |
| Sau3AI | GATC | 4 cut(s) | 153, 479, 724, 784 |
| Sau96I | GGNCC | 2 cut(s) | 195, 412 |
| SchI | GAGTC | 2 cut(s) | 171, 659 |
| ScrFI | CCNGG | 1 cut(s) | 812 |
| SduI | GDGCHC | 1 cut(s) | 812 |
| SfaNI | GCATC | 3 cut(s) | 127, 268, 672 |
| SfcI | CTRYAG | 1 cut(s) | 190 |
| SfoI | GGCGCC | 1 cut(s) | 208 |
| SinI | GGWCC | 1 cut(s) | 412 |
| SmiI | ATTTAAAT | 1 cut(s) | 720 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 26, 221, 255, 438, 720 |
| Sse9I | AATT | 6 cut(s) | 102, 308, 483, 591, 756, 858 |
| SspDI | GGCGCC | 1 cut(s) | 206 |
| SspMI | CTAG | 7 cut(s) | 239, 245, 389, 531, 657, 834, 851 |
| StyD4I | CCNGG | 1 cut(s) | 810 |
| StyI | CCWWGG | 1 cut(s) | 826 |
| SwaI | ATTTAAAT | 1 cut(s) | 720 |
| TaaI | ACNGT | 3 cut(s) | 57, 223, 494 |
| TaiI | ACGT | 1 cut(s) | 124 |
| TaqI | TCGA | 2 cut(s) | 52, 949 |
| TasI | AATT | 6 cut(s) | 102, 308, 483, 591, 756, 858 |
| TfiI | GAWTC | 2 cut(s) | 49, 226 |
| Tru1I | TTAA | 5 cut(s) | 182, 320, 438, 696, 719 |
| Tru9I | TTAA | 5 cut(s) | 182, 320, 438, 696, 719 |
| TscAI | CASTG | 3 cut(s) | 301, 499, 801 |
| TseI | GCWGC | 3 cut(s) | 189, 235, 871 |
| TspDTI | ATGAA | 6 cut(s) | 38, 357, 690, 858, 945, 975 |
| TspGWI | ACGGA | 1 cut(s) | 287 |
| TspRI | CASTG | 3 cut(s) | 301, 499, 801 |
| VpaK11BI | GGWCC | 1 cut(s) | 412 |
| XapI | RAATTY | 2 cut(s) | 591, 756 |
| XceI | RCATGY | 1 cut(s) | 749 |
| XmiI | GTMKAC | 1 cut(s) | 124 |
| XmnI | GAANNNNTTC | 1 cut(s) | 29 |
| XspI | CTAG | 7 cut(s) | 239, 245, 389, 531, 657, 834, 851 |