TdcA1-ORF2 protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1122 |
| Acc65I | GGTACC | 1 cut(s) | 395 |
| AccB1I | GGYRCC | 1 cut(s) | 395 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 612 |
| AccII | CGCG | 1 cut(s) | 1088 |
| AciI | CCGC | 6 cut(s) | 556, 689, 1086, 1175, 1413, 1550 |
| AclI | AACGTT | 1 cut(s) | 438 |
| AclWI | GGATC | 2 cut(s) | 286, 329 |
| AcsI | RAATTY | 4 cut(s) | 627, 719, 1245, 1523 |
| AcuI | CTGAAG | 3 cut(s) | 1005, 1113, 1128 |
| AdeI | CACNNNGTG | 2 cut(s) | 598, 1545 |
| AfaI | GTAC | 8 cut(s) | 59, 95, 197, 397, 650, 716, 1197, 1382 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 419, 612, 1299, 1300, 1390 |
| AgsI | TTSAA | 8 cut(s) | 53, 122, 925, 1165, 1207, 1235, 1328, 1367 |
| AluBI | AGCT | 5 cut(s) | 32, 664, 953, 1106, 1282 |
| AluI | AGCT | 5 cut(s) | 32, 664, 953, 1106, 1282 |
| Alw26I | GTCTC | 4 cut(s) | 149, 1050, 1225, 1495 |
| AlwI | GGATC | 2 cut(s) | 286, 329 |
| Ama87I | CYCGRG | 1 cut(s) | 1376 |
| ApeKI | GCWGC | 4 cut(s) | 16, 211, 489, 661 |
| ApoI | RAATTY | 4 cut(s) | 627, 719, 1245, 1523 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 557, 589 |
| Asp718I | GGTACC | 1 cut(s) | 395 |
| AspLEI | GCGC | 2 cut(s) | 1090, 1123 |
| AspS9I | GGNCC | 3 cut(s) | 250, 582, 869 |
| AsuC2I | CCSGG | 3 cut(s) | 11, 99, 1045 |
| AsuHPI | GGTGA | 4 cut(s) | 515, 1126, 1382, 1481 |
| AvaI | CYCGRG | 1 cut(s) | 1376 |
| AvaII | GGWCC | 3 cut(s) | 250, 582, 869 |
| AxyI | CCTNAGG | 1 cut(s) | 873 |
| BaeGI | GKGCMC | 1 cut(s) | 836 |
| BanI | GGYRCC | 1 cut(s) | 395 |
| BauI | CACGAG | 1 cut(s) | 1124 |
| BbsI | GAAGAC | 4 cut(s) | 116, 221, 863, 916 |
| BbvI | GCAGC | 4 cut(s) | 28, 198, 501, 673 |
| BccI | CCATC | 5 cut(s) | 124, 407, 572, 606, 1353 |
| BciVI | GTATCC | 3 cut(s) | 269, 443, 1026 |
| BclI | TGATCA | 1 cut(s) | 774 |
| BcnI | CCSGG | 3 cut(s) | 11, 99, 1045 |
| BcoDI | GTCTC | 4 cut(s) | 149, 1050, 1225, 1495 |
| BfaI | CTAG | 4 cut(s) | 27, 788, 1283, 1425 |
| BfmI | CTRYAG | 1 cut(s) | 191 |
| BfuI | GTATCC | 3 cut(s) | 269, 443, 1026 |
| BglII | AGATCT | 1 cut(s) | 268 |
| BisI | GCNGC | 6 cut(s) | 17, 212, 490, 662, 690, 1414 |
| BlpI | GCTNAGC | 1 cut(s) | 665 |
| BlsI | GCNGC | 6 cut(s) | 18, 213, 491, 663, 691, 1415 |
| Bme1390I | CCNGG | 3 cut(s) | 11, 99, 1045 |
| Bme18I | GGWCC | 3 cut(s) | 250, 582, 869 |
| BmeT110I | CYCGRG | 1 cut(s) | 1376 |
| BmgT120I | GGNCC | 3 cut(s) | 250, 582, 869 |
| BmiI | GGNNCC | 2 cut(s) | 397, 583 |
| BmrFI | CCNGG | 3 cut(s) | 11, 99, 1045 |
| BmsI | GCATC | 3 cut(s) | 198, 366, 786 |
| BoxI | GACNNNNGTC | 1 cut(s) | 369 |
| BpiI | GAAGAC | 4 cut(s) | 116, 221, 863, 916 |
| BpmI | CTGGAG | 2 cut(s) | 781, 1207 |
| Bpu10I | CCTNAGC | 1 cut(s) | 473 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 665 |
| BpuEI | CTTGAG | 1 cut(s) | 933 |
| BpuMI | CCSGG | 3 cut(s) | 11, 99, 1045 |
| BsaBI | GATNNNNATC | 1 cut(s) | 186 |
| BsaJI | CCNNGG | 4 cut(s) | 97, 217, 352, 418 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 478, 508 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 419, 612, 1299, 1300, 1390 |
| Bse118I | RCCGGY | 1 cut(s) | 1186 |
| Bse1I | ACTGG | 4 cut(s) | 764, 1224, 1301, 1337 |
| Bse21I | CCTNAGG | 1 cut(s) | 873 |
| Bse3DI | GCAATG | 2 cut(s) | 496, 1287 |
| Bse8I | GATNNNNATC | 1 cut(s) | 186 |
| BseDI | CCNNGG | 4 cut(s) | 97, 217, 352, 418 |
| BseGI | GGATG | 5 cut(s) | 429, 673, 1005, 1103, 1341 |
| BseJI | GATNNNNATC | 1 cut(s) | 186 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 419, 612, 1299, 1300, 1390 |
| BseMI | GCAATG | 2 cut(s) | 496, 1287 |
| BseMII | CTCAG | 1 cut(s) | 679 |
| BseNI | ACTGG | 4 cut(s) | 764, 1224, 1301, 1337 |
| BseSI | GKGCMC | 1 cut(s) | 836 |
| BseXI | GCAGC | 4 cut(s) | 28, 198, 501, 673 |
| BsgI | GTGCAG | 1 cut(s) | 35 |
| Bsh1236I | CGCG | 1 cut(s) | 1088 |
| Bsh1285I | CGRYCG | 1 cut(s) | 168 |
| BshNI | GGYRCC | 1 cut(s) | 395 |
| BsiEI | CGRYCG | 1 cut(s) | 168 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1376 |
| BsiSI | CCGG | 4 cut(s) | 11, 99, 1045, 1187 |
| BslFI | GGGAC | 1 cut(s) | 595 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 419, 612, 1299, 1300, 1390 |
| BsmAI | GTCTC | 4 cut(s) | 149, 1050, 1225, 1495 |
| BsmFI | GGGAC | 1 cut(s) | 595 |
| BsoBI | CYCGRG | 1 cut(s) | 1376 |
| Bsp1286I | GDGCHC | 1 cut(s) | 836 |
| Bsp143I | GATC | 6 cut(s) | 268, 291, 334, 774, 886, 1372 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 665 |
| BspACI | CCGC | 6 cut(s) | 556, 689, 1086, 1175, 1413, 1550 |
| BspCNI | CTCAG | 1 cut(s) | 678 |
| BspFNI | CGCG | 1 cut(s) | 1088 |
| BspLI | GGNNCC | 2 cut(s) | 397, 583 |
| BspPI | GGATC | 2 cut(s) | 286, 329 |
| BspT107I | GGYRCC | 1 cut(s) | 395 |
| BsrDI | GCAATG | 2 cut(s) | 496, 1287 |
| BsrFI | RCCGGY | 1 cut(s) | 1186 |
| BsrI | ACTGG | 4 cut(s) | 764, 1224, 1301, 1337 |
| BssAI | RCCGGY | 1 cut(s) | 1186 |
| BssECI | CCNNGG | 4 cut(s) | 97, 217, 352, 418 |
| BssMI | GATC | 6 cut(s) | 268, 291, 334, 774, 886, 1372 |
| BssSI | CACGAG | 1 cut(s) | 1124 |
| BssT1I | CCWWGG | 1 cut(s) | 352 |
| Bst2BI | CACGAG | 1 cut(s) | 1124 |
| Bst6I | CTCTTC | 2 cut(s) | 326, 336 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 498, 1118, 1183 |
| BstC8I | GCNNGC | 4 cut(s) | 72, 301, 880, 1479 |
| BstDEI | CTNAG | 3 cut(s) | 473, 665, 873 |
| BstDSI | CCRYGG | 2 cut(s) | 217, 418 |
| BstEII | GGTNACC | 1 cut(s) | 521 |
| BstF5I | GGATG | 5 cut(s) | 429, 673, 1005, 1103, 1341 |
| BstFNI | CGCG | 1 cut(s) | 1088 |
| BstHHI | GCGC | 2 cut(s) | 1090, 1123 |
| BstKTI | GATC | 6 cut(s) | 271, 294, 337, 777, 889, 1375 |
| BstMAI | GTCTC | 4 cut(s) | 149, 1050, 1225, 1495 |
| BstMBI | GATC | 6 cut(s) | 268, 291, 334, 774, 886, 1372 |
| BstMCI | CGRYCG | 1 cut(s) | 168 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 498, 1118, 1183 |
| BstNSI | RCATGY | 3 cut(s) | 303, 372, 383 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 369 |
| BstPI | GGTNACC | 1 cut(s) | 521 |
| BstSCI | CCNGG | 3 cut(s) | 9, 97, 1043 |
| BstSFI | CTRYAG | 1 cut(s) | 191 |
| BstSLI | GKGCMC | 1 cut(s) | 836 |
| BstUI | CGCG | 1 cut(s) | 1088 |
| BstV1I | GCAGC | 4 cut(s) | 28, 198, 501, 673 |
| BstV2I | GAAGAC | 4 cut(s) | 116, 221, 863, 916 |
| BstX2I | RGATCY | 3 cut(s) | 268, 291, 334 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 685 |
| BstYI | RGATCY | 3 cut(s) | 268, 291, 334 |
| Bsu36I | CCTNAGG | 1 cut(s) | 873 |
| BsuI | GTATCC | 3 cut(s) | 269, 443, 1026 |
| BtgI | CCRYGG | 2 cut(s) | 217, 418 |
| BtgZI | GCGATG | 2 cut(s) | 492, 1443 |
| BtsCI | GGATG | 5 cut(s) | 429, 673, 1005, 1103, 1341 |
| BtsI | GCAGTG | 3 cut(s) | 39, 198, 642 |
| BtsIMutI | CAGTG | 8 cut(s) | 39, 198, 409, 642, 829, 843, 1231, 1294 |
| Cac8I | GCNNGC | 4 cut(s) | 72, 301, 880, 1479 |
| CfoI | GCGC | 2 cut(s) | 1090, 1123 |
| Cfr10I | RCCGGY | 1 cut(s) | 1186 |
| Cfr13I | GGNCC | 3 cut(s) | 250, 582, 869 |
| CseI | GACGC | 2 cut(s) | 374, 1120 |
| Csp6I | GTAC | 8 cut(s) | 58, 94, 196, 396, 649, 715, 1196, 1381 |
| CviQI | GTAC | 8 cut(s) | 58, 94, 196, 396, 649, 715, 1196, 1381 |
| DdeI | CTNAG | 3 cut(s) | 473, 665, 873 |
| DpnI | GATC | 6 cut(s) | 270, 293, 336, 776, 888, 1374 |
| DpnII | GATC | 6 cut(s) | 268, 291, 334, 774, 886, 1372 |
| DraIII | CACNNNGTG | 2 cut(s) | 598, 1545 |
| Eam1104I | CTCTTC | 2 cut(s) | 326, 336 |
| EarI | CTCTTC | 2 cut(s) | 326, 336 |
| Eco130I | CCWWGG | 1 cut(s) | 352 |
| Eco47I | GGWCC | 3 cut(s) | 250, 582, 869 |
| Eco57I | CTGAAG | 3 cut(s) | 1005, 1113, 1128 |
| Eco81I | CCTNAGG | 1 cut(s) | 873 |
| Eco88I | CYCGRG | 1 cut(s) | 1376 |
| Eco91I | GGTNACC | 1 cut(s) | 521 |
| EcoO65I | GGTNACC | 1 cut(s) | 521 |
| EcoRI | GAATTC | 1 cut(s) | 1523 |
| EcoT14I | CCWWGG | 1 cut(s) | 352 |
| EcoT22I | ATGCAT | 2 cut(s) | 301, 381 |
| ErhI | CCWWGG | 1 cut(s) | 352 |
| FaqI | GGGAC | 1 cut(s) | 595 |
| FbaI | TGATCA | 1 cut(s) | 774 |
| Fnu4HI | GCNGC | 6 cut(s) | 17, 212, 490, 662, 690, 1414 |
| FokI | GGATG | 5 cut(s) | 436, 660, 1012, 1110, 1328 |
| Fsp4HI | GCNGC | 6 cut(s) | 17, 212, 490, 662, 690, 1414 |
| FspBI | CTAG | 4 cut(s) | 27, 788, 1283, 1425 |
| FspI | TGCGCA | 1 cut(s) | 1122 |
| GlaI | GCGC | 2 cut(s) | 1089, 1122 |
| GluI | GCNGC | 6 cut(s) | 17, 212, 490, 662, 690, 1414 |
| GsuI | CTGGAG | 2 cut(s) | 781, 1207 |
| HapII | CCGG | 4 cut(s) | 11, 99, 1045, 1187 |
| HgaI | GACGC | 2 cut(s) | 374, 1120 |
| HhaI | GCGC | 2 cut(s) | 1090, 1123 |
| Hin6I | GCGC | 2 cut(s) | 1088, 1121 |
| HinP1I | GCGC | 2 cut(s) | 1088, 1121 |
| HinfI | GANTC | 1 cut(s) | 1256 |
| HpaII | CCGG | 4 cut(s) | 11, 99, 1045, 1187 |
| HphI | GGTGA | 4 cut(s) | 515, 1126, 1382, 1481 |
| Hpy166II | GTNNAC | 3 cut(s) | 37, 94, 198 |
| Hpy188I | TCNGA | 4 cut(s) | 108, 254, 375, 1459 |
| Hpy8I | GTNNAC | 3 cut(s) | 37, 94, 198 |
| HpyAV | CCTTC | 8 cut(s) | 31, 166, 545, 923, 1029, 1088, 1159, 1504 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 438, 1362 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 498, 1118, 1183 |
| HpyF3I | CTNAG | 3 cut(s) | 473, 665, 873 |
| HpySE526I | ACGT | 3 cut(s) | 135, 438, 1362 |
| HspAI | GCGC | 2 cut(s) | 1088, 1121 |
| KpnI | GGTACC | 1 cut(s) | 399 |
| Ksp22I | TGATCA | 1 cut(s) | 774 |
| Kzo9I | GATC | 6 cut(s) | 268, 291, 334, 774, 886, 1372 |
| LmnI | GCTCC | 3 cut(s) | 486, 958, 1157 |
| Lsp1109I | GCAGC | 4 cut(s) | 28, 198, 501, 673 |
| LweI | GCATC | 3 cut(s) | 198, 366, 786 |
| MaeI | CTAG | 4 cut(s) | 27, 788, 1283, 1425 |
| MaeII | ACGT | 3 cut(s) | 135, 438, 1362 |
| MaeIII | GTNAC | 2 cut(s) | 521, 1132 |
| MalI | GATC | 6 cut(s) | 270, 293, 336, 776, 888, 1374 |
| MboI | GATC | 6 cut(s) | 268, 291, 334, 774, 886, 1372 |
| MflI | RGATCY | 3 cut(s) | 268, 291, 334 |
| MhlI | GDGCHC | 1 cut(s) | 836 |
| MluCI | AATT | 7 cut(s) | 627, 719, 902, 987, 1245, 1482, 1523 |
| MlyI | GAGTC | 1 cut(s) | 1250 |
| MmeI | TCCRAC | 1 cut(s) | 103 |
| MnlI | CCTC | 4 cut(s) | 475, 612, 844, 957 |
| Mph1103I | ATGCAT | 2 cut(s) | 301, 381 |
| MseI | TTAA | 4 cut(s) | 147, 642, 905, 1311 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1139 |
| MspI | CCGG | 4 cut(s) | 11, 99, 1045, 1187 |
| MspR9I | CCNGG | 3 cut(s) | 11, 99, 1045 |
| MvnI | CGCG | 1 cut(s) | 1088 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 498, 1118, 1183 |
| NciI | CCSGG | 3 cut(s) | 11, 99, 1045 |
| NdeII | GATC | 6 cut(s) | 268, 291, 334, 774, 886, 1372 |
| NlaIV | GGNNCC | 2 cut(s) | 397, 583 |
| NmuCI | GTSAC | 2 cut(s) | 521, 1132 |
| NsbI | TGCGCA | 1 cut(s) | 1122 |
| NsiI | ATGCAT | 2 cut(s) | 301, 381 |
| NspI | RCATGY | 3 cut(s) | 303, 372, 383 |
| PaeI | GCATGC | 1 cut(s) | 303 |
| PaeR7I | CTCGAG | 1 cut(s) | 1376 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 250 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 612 |
| PkrI | GCNGC | 6 cut(s) | 18, 213, 491, 663, 691, 1415 |
| PleI | GAGTC | 1 cut(s) | 1250 |
| PpsI | GAGTC | 1 cut(s) | 1250 |
| PshAI | GACNNNNGTC | 1 cut(s) | 369 |
| Psp1406I | AACGTT | 1 cut(s) | 438 |
| PspEI | GGTNACC | 1 cut(s) | 521 |
| PspN4I | GGNNCC | 2 cut(s) | 397, 583 |
| PspPI | GGNCC | 3 cut(s) | 250, 582, 869 |
| PsuI | RGATCY | 3 cut(s) | 268, 291, 334 |
| RsaI | GTAC | 8 cut(s) | 59, 95, 197, 397, 650, 716, 1197, 1382 |
| RsaNI | GTAC | 8 cut(s) | 58, 94, 196, 396, 649, 715, 1196, 1381 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1139 |
| SaqAI | TTAA | 4 cut(s) | 147, 642, 905, 1311 |
| SatI | GCNGC | 6 cut(s) | 17, 212, 490, 662, 690, 1414 |
| Sau3AI | GATC | 6 cut(s) | 268, 291, 334, 774, 886, 1372 |
| Sau96I | GGNCC | 3 cut(s) | 250, 582, 869 |
| SchI | GAGTC | 1 cut(s) | 1250 |
| ScrFI | CCNGG | 3 cut(s) | 11, 99, 1045 |
| SduI | GDGCHC | 1 cut(s) | 836 |
| SfaNI | GCATC | 3 cut(s) | 198, 366, 786 |
| SfcI | CTRYAG | 1 cut(s) | 191 |
| Sfr274I | CTCGAG | 1 cut(s) | 1376 |
| SinI | GGWCC | 3 cut(s) | 250, 582, 869 |
| SlaI | CTCGAG | 1 cut(s) | 1376 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1139 |
| SmlI | CTYRAG | 2 cut(s) | 948, 1376 |
| SmoI | CTYRAG | 2 cut(s) | 948, 1376 |
| SphI | GCATGC | 1 cut(s) | 303 |
| Sse9I | AATT | 7 cut(s) | 627, 719, 902, 987, 1245, 1482, 1523 |
| SsiI | CCGC | 6 cut(s) | 556, 689, 1086, 1175, 1413, 1550 |
| SspMI | CTAG | 4 cut(s) | 27, 788, 1283, 1425 |
| StyD4I | CCNGG | 3 cut(s) | 9, 97, 1043 |
| StyI | CCWWGG | 1 cut(s) | 352 |
| TaiI | ACGT | 3 cut(s) | 138, 441, 1365 |
| TaqI | TCGA | 4 cut(s) | 164, 206, 561, 1377 |
| TasI | AATT | 7 cut(s) | 627, 719, 902, 987, 1245, 1482, 1523 |
| TatI | WGTACW | 2 cut(s) | 57, 195 |
| TauI | GCSGC | 2 cut(s) | 692, 1416 |
| Tru1I | TTAA | 4 cut(s) | 147, 642, 905, 1311 |
| Tru9I | TTAA | 4 cut(s) | 147, 642, 905, 1311 |
| TscAI | CASTG | 8 cut(s) | 46, 205, 409, 642, 829, 843, 1231, 1301 |
| TseFI | GTSAC | 2 cut(s) | 521, 1132 |
| TseI | GCWGC | 4 cut(s) | 16, 211, 489, 661 |
| Tsp45I | GTSAC | 2 cut(s) | 521, 1132 |
| TspDTI | ATGAA | 3 cut(s) | 155, 1157, 1446 |
| TspRI | CASTG | 8 cut(s) | 46, 205, 409, 642, 829, 843, 1231, 1301 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 612 |
| VpaK11BI | GGWCC | 3 cut(s) | 250, 582, 869 |
| XapI | RAATTY | 4 cut(s) | 627, 719, 1245, 1523 |
| XceI | RCATGY | 3 cut(s) | 303, 372, 383 |
| XhoI | CTCGAG | 1 cut(s) | 1376 |
| XspI | CTAG | 4 cut(s) | 27, 788, 1283, 1425 |
| Zsp2I | ATGCAT | 2 cut(s) | 301, 381 |