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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 201 |
| Acc65I | GGTACC | 1 cut(s) | 511 |
| AccB1I | GGYRCC | 2 cut(s) | 511, 694 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 292, 872 |
| AccI | GTMKAC | 1 cut(s) | 852 |
| AciI | CCGC | 1 cut(s) | 817 |
| AcoI | YGGCCR | 1 cut(s) | 959 |
| AcsI | RAATTY | 1 cut(s) | 869 |
| AcuI | CTGAAG | 1 cut(s) | 63 |
| AdeI | CACNNNGTG | 1 cut(s) | 861 |
| AfaI | GTAC | 4 cut(s) | 374, 385, 513, 950 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 292, 872, 915 |
| AflII | CTTAAG | 1 cut(s) | 68 |
| AgsI | TTSAA | 8 cut(s) | 47, 124, 403, 416, 424, 430, 739, 752 |
| AhlI | ACTAGT | 1 cut(s) | 194 |
| AjnI | CCWGG | 2 cut(s) | 697, 839 |
| AluBI | AGCT | 3 cut(s) | 626, 633, 884 |
| AluI | AGCT | 3 cut(s) | 626, 633, 884 |
| AoxI | GGCC | 1 cut(s) | 959 |
| ApeKI | GCWGC | 3 cut(s) | 89, 548, 613 |
| ApoI | RAATTY | 1 cut(s) | 869 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 573 |
| Asp718I | GGTACC | 1 cut(s) | 511 |
| AspS9I | GGNCC | 1 cut(s) | 166 |
| AsuC2I | CCSGG | 1 cut(s) | 516 |
| AsuHPI | GGTGA | 3 cut(s) | 266, 659, 825 |
| AvaII | GGWCC | 1 cut(s) | 166 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 356, 389 |
| BanI | GGYRCC | 2 cut(s) | 511, 694 |
| BbvI | GCAGC | 3 cut(s) | 76, 560, 625 |
| BccI | CCATC | 7 cut(s) | 6, 350, 553, 651, 800, 832, 908 |
| BciT130I | CCWGG | 2 cut(s) | 699, 841 |
| BcnI | CCSGG | 1 cut(s) | 516 |
| BcuI | ACTAGT | 1 cut(s) | 194 |
| BfaI | CTAG | 4 cut(s) | 195, 321, 473, 885 |
| BfrI | CTTAAG | 1 cut(s) | 68 |
| BisI | GCNGC | 4 cut(s) | 90, 549, 614, 818 |
| BlsI | GCNGC | 4 cut(s) | 91, 550, 615, 819 |
| Bme1390I | CCNGG | 3 cut(s) | 516, 699, 841 |
| Bme18I | GGWCC | 1 cut(s) | 166 |
| BmgT120I | GGNCC | 1 cut(s) | 166 |
| BmiI | GGNNCC | 3 cut(s) | 513, 696, 890 |
| BmrFI | CCNGG | 3 cut(s) | 516, 699, 841 |
| BmrI | ACTGGG | 2 cut(s) | 372, 674 |
| BmsI | GCATC | 4 cut(s) | 6, 442, 804, 829 |
| BmuI | ACTGGG | 2 cut(s) | 372, 674 |
| BpuMI | CCSGG | 1 cut(s) | 516 |
| BsaJI | CCNNGG | 2 cut(s) | 698, 992 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 292, 872, 915 |
| Bse118I | RCCGGY | 1 cut(s) | 961 |
| Bse1I | ACTGG | 2 cut(s) | 378, 669 |
| BseBI | CCWGG | 2 cut(s) | 699, 841 |
| BseDI | CCNNGG | 2 cut(s) | 698, 992 |
| BseGI | GGATG | 6 cut(s) | 17, 21, 313, 564, 750, 820 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 292, 872, 915 |
| BseMII | CTCAG | 1 cut(s) | 924 |
| BseNI | ACTGG | 2 cut(s) | 378, 669 |
| BseRI | GAGGAG | 1 cut(s) | 326 |
| BseXI | GCAGC | 3 cut(s) | 76, 560, 625 |
| BshFI | GGCC | 1 cut(s) | 961 |
| BshNI | GGYRCC | 2 cut(s) | 511, 694 |
| BsiSI | CCGG | 2 cut(s) | 516, 962 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 292, 872, 915 |
| BsmI | GAATGC | 3 cut(s) | 91, 337, 616 |
| BsnI | GGCC | 1 cut(s) | 961 |
| Bsp1407I | TGTACA | 1 cut(s) | 383 |
| Bsp143I | GATC | 2 cut(s) | 32, 639 |
| Bsp19I | CCATGG | 1 cut(s) | 992 |
| BspACI | CCGC | 1 cut(s) | 817 |
| BspANI | GGCC | 1 cut(s) | 961 |
| BspCNI | CTCAG | 1 cut(s) | 923 |
| BspHI | TCATGA | 1 cut(s) | 477 |
| BspLI | GGNNCC | 3 cut(s) | 513, 696, 890 |
| BspT107I | GGYRCC | 2 cut(s) | 511, 694 |
| BspTI | CTTAAG | 1 cut(s) | 68 |
| BsrFI | RCCGGY | 1 cut(s) | 961 |
| BsrGI | TGTACA | 1 cut(s) | 383 |
| BsrI | ACTGG | 2 cut(s) | 378, 669 |
| BssAI | RCCGGY | 1 cut(s) | 961 |
| BssECI | CCNNGG | 2 cut(s) | 698, 992 |
| BssMI | GATC | 2 cut(s) | 32, 639 |
| BssT1I | CCWWGG | 1 cut(s) | 992 |
| Bst2UI | CCWGG | 2 cut(s) | 699, 841 |
| Bst4CI | ACNGT | 2 cut(s) | 268, 407 |
| BstAFI | CTTAAG | 1 cut(s) | 68 |
| BstAUI | TGTACA | 1 cut(s) | 383 |
| BstC8I | GCNNGC | 3 cut(s) | 21, 959, 963 |
| BstDEI | CTNAG | 2 cut(s) | 341, 910 |
| BstDSI | CCRYGG | 1 cut(s) | 992 |
| BstF5I | GGATG | 6 cut(s) | 17, 21, 313, 564, 750, 820 |
| BstKTI | GATC | 2 cut(s) | 35, 642 |
| BstMBI | GATC | 2 cut(s) | 32, 639 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 89, 539, 548 |
| BstNI | CCWGG | 2 cut(s) | 699, 841 |
| BstNSI | RCATGY | 5 cut(s) | 23, 472, 490, 601, 788 |
| BstSCI | CCNGG | 3 cut(s) | 514, 697, 839 |
| BstV1I | GCAGC | 3 cut(s) | 76, 560, 625 |
| BsuRI | GGCC | 1 cut(s) | 961 |
| BtgI | CCRYGG | 1 cut(s) | 992 |
| BtsCI | GGATG | 6 cut(s) | 17, 21, 313, 564, 750, 820 |
| Cac8I | GCNNGC | 3 cut(s) | 21, 959, 963 |
| CciI | TCATGA | 1 cut(s) | 477 |
| Cfr10I | RCCGGY | 1 cut(s) | 961 |
| Cfr13I | GGNCC | 1 cut(s) | 166 |
| Csp6I | GTAC | 4 cut(s) | 373, 384, 512, 949 |
| CviJI | RGCY | 7 cut(s) | 533, 626, 633, 884, 902, 961, 965 |
| CviKI_1 | RGCY | 7 cut(s) | 533, 626, 633, 884, 902, 961, 965 |
| CviQI | GTAC | 4 cut(s) | 373, 384, 512, 949 |
| DdeI | CTNAG | 2 cut(s) | 341, 910 |
| DpnI | GATC | 2 cut(s) | 34, 641 |
| DpnII | GATC | 2 cut(s) | 32, 639 |
| DraIII | CACNNNGTG | 1 cut(s) | 861 |
| EaeI | YGGCCR | 1 cut(s) | 959 |
| Eco130I | CCWWGG | 1 cut(s) | 992 |
| Eco32I | GATATC | 1 cut(s) | 318 |
| Eco47I | GGWCC | 1 cut(s) | 166 |
| Eco57I | CTGAAG | 1 cut(s) | 63 |
| EcoRII | CCWGG | 2 cut(s) | 697, 839 |
| EcoRV | GATATC | 1 cut(s) | 318 |
| EcoT14I | CCWWGG | 1 cut(s) | 992 |
| EcoT22I | ATGCAT | 2 cut(s) | 21, 337 |
| ErhI | CCWWGG | 1 cut(s) | 992 |
| FblI | GTMKAC | 1 cut(s) | 852 |
| Fnu4HI | GCNGC | 4 cut(s) | 90, 549, 614, 818 |
| FokI | GGATG | 6 cut(s) | 24, 28, 320, 571, 757, 807 |
| Fsp4HI | GCNGC | 4 cut(s) | 90, 549, 614, 818 |
| FspBI | CTAG | 4 cut(s) | 195, 321, 473, 885 |
| GluI | GCNGC | 4 cut(s) | 90, 549, 614, 818 |
| HaeIII | GGCC | 1 cut(s) | 961 |
| HapII | CCGG | 2 cut(s) | 516, 962 |
| HincII | GTYRAC | 1 cut(s) | 853 |
| HindII | GTYRAC | 1 cut(s) | 853 |
| HinfI | GANTC | 6 cut(s) | 257, 326, 574, 650, 735, 830 |
| HpaII | CCGG | 2 cut(s) | 516, 962 |
| HphI | GGTGA | 3 cut(s) | 266, 659, 825 |
| Hpy166II | GTNNAC | 1 cut(s) | 853 |
| Hpy188I | TCNGA | 3 cut(s) | 262, 829, 913 |
| Hpy188III | TCNNGA | 5 cut(s) | 235, 478, 497, 654, 866 |
| Hpy8I | GTNNAC | 1 cut(s) | 853 |
| HpyAV | CCTTC | 7 cut(s) | 237, 494, 663, 697, 763, 902, 995 |
| HpyCH4III | ACNGT | 2 cut(s) | 268, 407 |
| HpyCH4V | TGCA | 4 cut(s) | 19, 335, 548, 597 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 89, 539, 548 |
| HpyF3I | CTNAG | 2 cut(s) | 341, 910 |
| KpnI | GGTACC | 1 cut(s) | 515 |
| KroI | GCCGGC | 1 cut(s) | 961 |
| KroNI | GCCGGC | 1 cut(s) | 963 |
| Kzo9I | GATC | 2 cut(s) | 32, 639 |
| Lsp1109I | GCAGC | 3 cut(s) | 76, 560, 625 |
| LweI | GCATC | 4 cut(s) | 6, 442, 804, 829 |
| MaeI | CTAG | 4 cut(s) | 195, 321, 473, 885 |
| MaeIII | GTNAC | 5 cut(s) | 131, 190, 281, 323, 973 |
| MalI | GATC | 2 cut(s) | 34, 641 |
| MboI | GATC | 2 cut(s) | 32, 639 |
| MboII | GAAGA | 2 cut(s) | 365, 697 |
| MluCI | AATT | 4 cut(s) | 205, 277, 845, 869 |
| MlyI | GAGTC | 1 cut(s) | 320 |
| MmeI | TCCRAC | 1 cut(s) | 489 |
| Mph1103I | ATGCAT | 2 cut(s) | 21, 337 |
| MroNI | GCCGGC | 1 cut(s) | 961 |
| MroXI | GAANNNNTTC | 1 cut(s) | 573 |
| MseI | TTAA | 5 cut(s) | 69, 162, 180, 921, 938 |
| MspCI | CTTAAG | 1 cut(s) | 68 |
| MspI | CCGG | 2 cut(s) | 516, 962 |
| MspR9I | CCNGG | 3 cut(s) | 516, 699, 841 |
| Mva1269I | GAATGC | 3 cut(s) | 91, 337, 616 |
| MvaI | CCWGG | 2 cut(s) | 699, 841 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 89, 539, 548 |
| NaeI | GCCGGC | 1 cut(s) | 963 |
| NciI | CCSGG | 1 cut(s) | 516 |
| NcoI | CCATGG | 1 cut(s) | 992 |
| NdeII | GATC | 2 cut(s) | 32, 639 |
| NgoMIV | GCCGGC | 1 cut(s) | 961 |
| NlaIV | GGNNCC | 3 cut(s) | 513, 696, 890 |
| NmuCI | GTSAC | 2 cut(s) | 190, 323 |
| NsiI | ATGCAT | 2 cut(s) | 21, 337 |
| NspI | RCATGY | 5 cut(s) | 23, 472, 490, 601, 788 |
| PaeI | GCATGC | 1 cut(s) | 23 |
| PagI | TCATGA | 1 cut(s) | 477 |
| PctI | GAATGC | 3 cut(s) | 91, 337, 616 |
| PdiI | GCCGGC | 1 cut(s) | 963 |
| PdmI | GAANNNNTTC | 1 cut(s) | 573 |
| PfeI | GAWTC | 5 cut(s) | 257, 574, 650, 735, 830 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 292, 872 |
| PkrI | GCNGC | 4 cut(s) | 91, 550, 615, 819 |
| PleI | GAGTC | 1 cut(s) | 320 |
| PpsI | GAGTC | 1 cut(s) | 320 |
| PsiI | TTATAA | 1 cut(s) | 201 |
| Psp6I | CCWGG | 2 cut(s) | 697, 839 |
| PspGI | CCWGG | 2 cut(s) | 697, 839 |
| PspN4I | GGNNCC | 3 cut(s) | 513, 696, 890 |
| PspPI | GGNCC | 1 cut(s) | 166 |
| RsaI | GTAC | 4 cut(s) | 374, 385, 513, 950 |
| RsaNI | GTAC | 4 cut(s) | 373, 384, 512, 949 |
| SalI | GTCGAC | 1 cut(s) | 851 |
| SaqAI | TTAA | 5 cut(s) | 69, 162, 180, 921, 938 |
| SatI | GCNGC | 4 cut(s) | 90, 549, 614, 818 |
| Sau3AI | GATC | 2 cut(s) | 32, 639 |
| Sau96I | GGNCC | 1 cut(s) | 166 |
| SchI | GAGTC | 1 cut(s) | 320 |
| ScrFI | CCNGG | 3 cut(s) | 516, 699, 841 |
| SfaNI | GCATC | 4 cut(s) | 6, 442, 804, 829 |
| SinI | GGWCC | 1 cut(s) | 166 |
| SmlI | CTYRAG | 1 cut(s) | 68 |
| SmoI | CTYRAG | 1 cut(s) | 68 |
| SpeI | ACTAGT | 1 cut(s) | 194 |
| SphI | GCATGC | 1 cut(s) | 23 |
| Sse9I | AATT | 4 cut(s) | 205, 277, 845, 869 |
| SsiI | CCGC | 1 cut(s) | 817 |
| SspMI | CTAG | 4 cut(s) | 195, 321, 473, 885 |
| StyD4I | CCNGG | 3 cut(s) | 514, 697, 839 |
| StyI | CCWWGG | 1 cut(s) | 992 |
| TaaI | ACNGT | 2 cut(s) | 268, 407 |
| TaqI | TCGA | 2 cut(s) | 329, 852 |
| TasI | AATT | 4 cut(s) | 205, 277, 845, 869 |
| TatI | WGTACW | 1 cut(s) | 383 |
| TauI | GCSGC | 1 cut(s) | 820 |
| TfiI | GAWTC | 5 cut(s) | 257, 574, 650, 735, 830 |
| Tru1I | TTAA | 5 cut(s) | 69, 162, 180, 921, 938 |
| Tru9I | TTAA | 5 cut(s) | 69, 162, 180, 921, 938 |
| TseFI | GTSAC | 2 cut(s) | 190, 323 |
| TseI | GCWGC | 3 cut(s) | 89, 548, 613 |
| Tsp45I | GTSAC | 2 cut(s) | 190, 323 |
| TspDTI | ATGAA | 3 cut(s) | 290, 566, 582 |
| TspGWI | ACGGA | 1 cut(s) | 257 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 292, 872 |
| Vha464I | CTTAAG | 1 cut(s) | 68 |
| VpaK11BI | GGWCC | 1 cut(s) | 166 |
| XapI | RAATTY | 1 cut(s) | 869 |
| XceI | RCATGY | 5 cut(s) | 23, 472, 490, 601, 788 |
| XmiI | GTMKAC | 1 cut(s) | 852 |
| XmnI | GAANNNNTTC | 1 cut(s) | 573 |
| XspI | CTAG | 4 cut(s) | 195, 321, 473, 885 |
| Zsp2I | ATGCAT | 2 cut(s) | 21, 337 |