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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 327 |
| AcoI | YGGCCR | 1 cut(s) | 492 |
| AcuI | CTGAAG | 1 cut(s) | 422 |
| AfaI | GTAC | 5 cut(s) | 59, 95, 197, 435, 476 |
| AflII | CTTAAG | 1 cut(s) | 272 |
| AflIII | ACRYGT | 1 cut(s) | 477 |
| AgsI | TTSAA | 1 cut(s) | 122 |
| AluBI | AGCT | 5 cut(s) | 32, 277, 400, 469, 500 |
| AluI | AGCT | 5 cut(s) | 32, 277, 400, 469, 500 |
| Alw26I | GTCTC | 1 cut(s) | 149 |
| AoxI | GGCC | 2 cut(s) | 358, 492 |
| ApeKI | GCWGC | 2 cut(s) | 16, 211 |
| AspS9I | GGNCC | 1 cut(s) | 250 |
| AsuC2I | CCSGG | 2 cut(s) | 11, 99 |
| AvaII | GGWCC | 1 cut(s) | 250 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 425, 458 |
| BbsI | GAAGAC | 2 cut(s) | 116, 474 |
| BbvI | GCAGC | 2 cut(s) | 28, 198 |
| BccI | CCATC | 2 cut(s) | 124, 501 |
| BceAI | ACGGC | 1 cut(s) | 507 |
| BciVI | GTATCC | 1 cut(s) | 269 |
| BcnI | CCSGG | 2 cut(s) | 11, 99 |
| BcoDI | GTCTC | 1 cut(s) | 149 |
| BfaI | CTAG | 3 cut(s) | 27, 45, 338 |
| BfmI | CTRYAG | 1 cut(s) | 408 |
| BfrI | CTTAAG | 1 cut(s) | 272 |
| BfuI | GTATCC | 1 cut(s) | 269 |
| BglII | AGATCT | 2 cut(s) | 268, 334 |
| BisI | GCNGC | 2 cut(s) | 17, 212 |
| BlsI | GCNGC | 2 cut(s) | 18, 213 |
| Bme1390I | CCNGG | 2 cut(s) | 11, 99 |
| Bme18I | GGWCC | 1 cut(s) | 250 |
| BmgT120I | GGNCC | 1 cut(s) | 250 |
| BmrFI | CCNGG | 2 cut(s) | 11, 99 |
| BmsI | GCATC | 1 cut(s) | 198 |
| BpiI | GAAGAC | 2 cut(s) | 116, 474 |
| BpuMI | CCSGG | 2 cut(s) | 11, 99 |
| BsaBI | GATNNNNATC | 1 cut(s) | 186 |
| BsaJI | CCNNGG | 3 cut(s) | 97, 217, 352 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 458, 488 |
| Bse8I | GATNNNNATC | 1 cut(s) | 186 |
| BseDI | CCNNGG | 3 cut(s) | 97, 217, 352 |
| BseJI | GATNNNNATC | 1 cut(s) | 186 |
| BseX3I | CGGCCG | 1 cut(s) | 492 |
| BseXI | GCAGC | 2 cut(s) | 28, 198 |
| BsgI | GTGCAG | 1 cut(s) | 35 |
| Bsh1285I | CGRYCG | 2 cut(s) | 168, 495 |
| BshFI | GGCC | 2 cut(s) | 360, 494 |
| BsiEI | CGRYCG | 2 cut(s) | 168, 495 |
| BsiSI | CCGG | 2 cut(s) | 11, 99 |
| BsmAI | GTCTC | 1 cut(s) | 149 |
| BsnI | GGCC | 2 cut(s) | 360, 494 |
| Bsp1407I | TGTACA | 1 cut(s) | 474 |
| Bsp143I | GATC | 2 cut(s) | 268, 334 |
| BspACI | CCGC | 1 cut(s) | 327 |
| BspANI | GGCC | 2 cut(s) | 360, 494 |
| BspTI | CTTAAG | 1 cut(s) | 272 |
| BsrGI | TGTACA | 1 cut(s) | 474 |
| BssECI | CCNNGG | 3 cut(s) | 97, 217, 352 |
| BssMI | GATC | 2 cut(s) | 268, 334 |
| BssT1I | CCWWGG | 1 cut(s) | 352 |
| Bst4CI | ACNGT | 3 cut(s) | 115, 169, 221 |
| Bst6I | CTCTTC | 1 cut(s) | 326 |
| BstAFI | CTTAAG | 1 cut(s) | 272 |
| BstAUI | TGTACA | 1 cut(s) | 474 |
| BstC8I | GCNNGC | 3 cut(s) | 72, 301, 513 |
| BstDSI | CCRYGG | 1 cut(s) | 217 |
| BstKTI | GATC | 2 cut(s) | 271, 337 |
| BstMAI | GTCTC | 1 cut(s) | 149 |
| BstMBI | GATC | 2 cut(s) | 268, 334 |
| BstMCI | CGRYCG | 2 cut(s) | 168, 495 |
| BstNSI | RCATGY | 3 cut(s) | 303, 372, 481 |
| BstSCI | CCNGG | 2 cut(s) | 9, 97 |
| BstSFI | CTRYAG | 1 cut(s) | 408 |
| BstV1I | GCAGC | 2 cut(s) | 28, 198 |
| BstV2I | GAAGAC | 2 cut(s) | 116, 474 |
| BstX2I | RGATCY | 2 cut(s) | 268, 334 |
| BstYI | RGATCY | 2 cut(s) | 268, 334 |
| BstZI | CGGCCG | 1 cut(s) | 492 |
| BsuI | GTATCC | 1 cut(s) | 269 |
| BsuRI | GGCC | 2 cut(s) | 360, 494 |
| BtgI | CCRYGG | 1 cut(s) | 217 |
| BtsI | GCAGTG | 2 cut(s) | 39, 198 |
| BtsIMutI | CAGTG | 3 cut(s) | 39, 198, 384 |
| Cac8I | GCNNGC | 3 cut(s) | 72, 301, 513 |
| Cfr13I | GGNCC | 1 cut(s) | 250 |
| CseI | GACGC | 1 cut(s) | 374 |
| Csp6I | GTAC | 5 cut(s) | 58, 94, 196, 434, 475 |
| CviAII | CATG | 4 cut(s) | 296, 300, 369, 478 |
| CviJI | RGCY | 9 cut(s) | 19, 32, 176, 277, 360, 400, 469, 494, 500 |
| CviKI_1 | RGCY | 9 cut(s) | 19, 32, 176, 277, 360, 400, 469, 494, 500 |
| CviQI | GTAC | 5 cut(s) | 58, 94, 196, 434, 475 |
| DpnI | GATC | 2 cut(s) | 270, 336 |
| DpnII | GATC | 2 cut(s) | 268, 334 |
| EaeI | YGGCCR | 1 cut(s) | 492 |
| EagI | CGGCCG | 1 cut(s) | 492 |
| Eam1104I | CTCTTC | 1 cut(s) | 326 |
| EarI | CTCTTC | 1 cut(s) | 326 |
| EclXI | CGGCCG | 1 cut(s) | 492 |
| Eco130I | CCWWGG | 1 cut(s) | 352 |
| Eco47I | GGWCC | 1 cut(s) | 250 |
| Eco52I | CGGCCG | 1 cut(s) | 492 |
| Eco57I | CTGAAG | 1 cut(s) | 422 |
| EcoT14I | CCWWGG | 1 cut(s) | 352 |
| EcoT22I | ATGCAT | 1 cut(s) | 301 |
| ErhI | CCWWGG | 1 cut(s) | 352 |
| FaeI | CATG | 4 cut(s) | 299, 303, 372, 481 |
| FatI | CATG | 4 cut(s) | 295, 299, 368, 477 |
| Fnu4HI | GCNGC | 2 cut(s) | 17, 212 |
| Fsp4HI | GCNGC | 2 cut(s) | 17, 212 |
| FspBI | CTAG | 3 cut(s) | 27, 45, 338 |
| GluI | GCNGC | 2 cut(s) | 17, 212 |
| HaeIII | GGCC | 2 cut(s) | 360, 494 |
| HapII | CCGG | 2 cut(s) | 11, 99 |
| HgaI | GACGC | 1 cut(s) | 374 |
| Hin1II | CATG | 4 cut(s) | 299, 303, 372, 481 |
| HincII | GTYRAC | 1 cut(s) | 37 |
| HindII | GTYRAC | 1 cut(s) | 37 |
| HindIII | AAGCTT | 1 cut(s) | 275 |
| HinfI | GANTC | 1 cut(s) | 403 |
| HpaII | CCGG | 2 cut(s) | 11, 99 |
| Hpy166II | GTNNAC | 3 cut(s) | 37, 94, 198 |
| Hpy188I | TCNGA | 2 cut(s) | 108, 254 |
| Hpy188III | TCNNGA | 3 cut(s) | 119, 262, 338 |
| Hpy8I | GTNNAC | 3 cut(s) | 37, 94, 198 |
| HpyAV | CCTTC | 4 cut(s) | 31, 166, 335, 424 |
| HpyCH4III | ACNGT | 3 cut(s) | 115, 169, 221 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyCH4V | TGCA | 3 cut(s) | 16, 299, 303 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92II | CATG | 4 cut(s) | 299, 303, 372, 481 |
| Kzo9I | GATC | 2 cut(s) | 268, 334 |
| LmnI | GCTCC | 1 cut(s) | 466 |
| LpnPI | CCDG | 8 cut(s) | 18, 24, 102, 112, 275, 376, 396, 438 |
| Lsp1109I | GCAGC | 2 cut(s) | 28, 198 |
| LweI | GCATC | 1 cut(s) | 198 |
| MaeI | CTAG | 3 cut(s) | 27, 45, 338 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 1 cut(s) | 380 |
| MalI | GATC | 2 cut(s) | 270, 336 |
| MboI | GATC | 2 cut(s) | 268, 334 |
| MboII | GAAGA | 4 cut(s) | 121, 221, 313, 474 |
| MflI | RGATCY | 2 cut(s) | 268, 334 |
| MluCI | AATT | 1 cut(s) | 144 |
| MlyI | GAGTC | 1 cut(s) | 397 |
| MmeI | TCCRAC | 2 cut(s) | 103, 444 |
| Mph1103I | ATGCAT | 1 cut(s) | 301 |
| MseI | TTAA | 3 cut(s) | 51, 147, 273 |
| MspCI | CTTAAG | 1 cut(s) | 272 |
| MspI | CCGG | 2 cut(s) | 11, 99 |
| MspR9I | CCNGG | 2 cut(s) | 11, 99 |
| NciI | CCSGG | 2 cut(s) | 11, 99 |
| NdeII | GATC | 2 cut(s) | 268, 334 |
| NlaIII | CATG | 4 cut(s) | 299, 303, 372, 481 |
| NmuCI | GTSAC | 1 cut(s) | 380 |
| NsiI | ATGCAT | 1 cut(s) | 301 |
| NspI | RCATGY | 3 cut(s) | 303, 372, 481 |
| PaeI | GCATGC | 1 cut(s) | 303 |
| PciI | ACATGT | 1 cut(s) | 477 |
| PkrI | GCNGC | 2 cut(s) | 18, 213 |
| PleI | GAGTC | 1 cut(s) | 397 |
| PpsI | GAGTC | 1 cut(s) | 397 |
| PscI | ACATGT | 1 cut(s) | 477 |
| PspPI | GGNCC | 1 cut(s) | 250 |
| PsuI | RGATCY | 2 cut(s) | 268, 334 |
| RsaI | GTAC | 5 cut(s) | 59, 95, 197, 435, 476 |
| RsaNI | GTAC | 5 cut(s) | 58, 94, 196, 434, 475 |
| SaqAI | TTAA | 3 cut(s) | 51, 147, 273 |
| SatI | GCNGC | 2 cut(s) | 17, 212 |
| Sau3AI | GATC | 2 cut(s) | 268, 334 |
| Sau96I | GGNCC | 1 cut(s) | 250 |
| SchI | GAGTC | 1 cut(s) | 397 |
| ScrFI | CCNGG | 2 cut(s) | 11, 99 |
| SfaNI | GCATC | 1 cut(s) | 198 |
| SfcI | CTRYAG | 1 cut(s) | 408 |
| SinI | GGWCC | 1 cut(s) | 250 |
| SmlI | CTYRAG | 1 cut(s) | 272 |
| SmoI | CTYRAG | 1 cut(s) | 272 |
| SphI | GCATGC | 1 cut(s) | 303 |
| Sse9I | AATT | 1 cut(s) | 144 |
| SsiI | CCGC | 1 cut(s) | 327 |
| SspMI | CTAG | 3 cut(s) | 27, 45, 338 |
| StyD4I | CCNGG | 2 cut(s) | 9, 97 |
| StyI | CCWWGG | 1 cut(s) | 352 |
| TaaI | ACNGT | 3 cut(s) | 115, 169, 221 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 2 cut(s) | 164, 206 |
| TasI | AATT | 1 cut(s) | 144 |
| TatI | WGTACW | 3 cut(s) | 57, 195, 474 |
| Tru1I | TTAA | 3 cut(s) | 51, 147, 273 |
| Tru9I | TTAA | 3 cut(s) | 51, 147, 273 |
| TscAI | CASTG | 3 cut(s) | 46, 205, 391 |
| TseFI | GTSAC | 1 cut(s) | 380 |
| TseI | GCWGC | 2 cut(s) | 16, 211 |
| Tsp45I | GTSAC | 1 cut(s) | 380 |
| TspDTI | ATGAA | 1 cut(s) | 155 |
| TspRI | CASTG | 3 cut(s) | 46, 205, 391 |
| Vha464I | CTTAAG | 1 cut(s) | 272 |
| VpaK11BI | GGWCC | 1 cut(s) | 250 |
| XbaI | TCTAGA | 1 cut(s) | 337 |
| XceI | RCATGY | 3 cut(s) | 303, 372, 481 |
| XspI | CTAG | 3 cut(s) | 27, 45, 338 |
| Zsp2I | ATGCAT | 1 cut(s) | 301 |