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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1022 |
| Acc36I | ACCTGC | 1 cut(s) | 565 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 824, 1157 |
| AccI | GTMKAC | 1 cut(s) | 1026 |
| AccII | CGCG | 1 cut(s) | 756 |
| AciI | CCGC | 2 cut(s) | 23, 150 |
| AcoI | YGGCCR | 1 cut(s) | 815 |
| AcsI | RAATTY | 2 cut(s) | 71, 615 |
| AfaI | GTAC | 3 cut(s) | 121, 715, 902 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 686, 824, 1157 |
| AflIII | ACRYGT | 3 cut(s) | 683, 716, 969 |
| AgsI | TTSAA | 7 cut(s) | 323, 472, 696, 874, 1054, 1214, 1275 |
| AjnI | CCWGG | 2 cut(s) | 418, 1006 |
| AluBI | AGCT | 4 cut(s) | 245, 779, 906, 1154 |
| AluI | AGCT | 4 cut(s) | 245, 779, 906, 1154 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 245 |
| AoxI | GGCC | 4 cut(s) | 225, 815, 911, 995 |
| ApeKI | GCWGC | 4 cut(s) | 242, 266, 894, 1267 |
| ApoI | RAATTY | 2 cut(s) | 71, 615 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 158, 190 |
| AspS9I | GGNCC | 2 cut(s) | 166, 995 |
| AsuHPI | GGTGA | 2 cut(s) | 67, 466 |
| AvaII | GGWCC | 1 cut(s) | 166 |
| BaeGI | GKGCMC | 1 cut(s) | 680 |
| BalI | TGGCCA | 1 cut(s) | 817 |
| BbsI | GAAGAC | 1 cut(s) | 587 |
| BbvI | GCAGC | 4 cut(s) | 254, 278, 906, 1254 |
| BccI | CCATC | 4 cut(s) | 10, 177, 752, 1253 |
| BceAI | ACGGC | 1 cut(s) | 322 |
| BciT130I | CCWGG | 2 cut(s) | 420, 1008 |
| BfaI | CTAG | 3 cut(s) | 596, 837, 1235 |
| BfuAI | ACCTGC | 1 cut(s) | 565 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 946 |
| BglII | AGATCT | 1 cut(s) | 32 |
| BisI | GCNGC | 4 cut(s) | 243, 267, 895, 1268 |
| BlsI | GCNGC | 4 cut(s) | 244, 268, 896, 1269 |
| Bme1390I | CCNGG | 2 cut(s) | 420, 1008 |
| Bme18I | GGWCC | 1 cut(s) | 166 |
| BmgT120I | GGNCC | 2 cut(s) | 166, 995 |
| BmiI | GGNNCC | 2 cut(s) | 167, 1035 |
| BmrFI | CCNGG | 2 cut(s) | 420, 1008 |
| BmsI | GCATC | 6 cut(s) | 181, 253, 337, 655, 772, 1078 |
| BpiI | GAAGAC | 1 cut(s) | 587 |
| BsaJI | CCNNGG | 3 cut(s) | 78, 418, 944 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 686, 824, 1157 |
| Bse1I | ACTGG | 1 cut(s) | 539 |
| Bse3DI | GCAATG | 1 cut(s) | 553 |
| BseBI | CCWGG | 2 cut(s) | 420, 1008 |
| BseDI | CCNNGG | 3 cut(s) | 78, 418, 944 |
| BseGI | GGATG | 3 cut(s) | 21, 772, 1245 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 686, 824, 1157 |
| BseMI | GCAATG | 1 cut(s) | 553 |
| BseMII | CTCAG | 1 cut(s) | 498 |
| BseNI | ACTGG | 1 cut(s) | 539 |
| BseSI | GKGCMC | 1 cut(s) | 680 |
| BseXI | GCAGC | 4 cut(s) | 254, 278, 906, 1254 |
| Bsh1236I | CGCG | 1 cut(s) | 756 |
| BshFI | GGCC | 4 cut(s) | 227, 817, 913, 997 |
| BslFI | GGGAC | 1 cut(s) | 179 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 686, 824, 1157 |
| BsmFI | GGGAC | 1 cut(s) | 179 |
| BsnI | GGCC | 4 cut(s) | 227, 817, 913, 997 |
| Bsp1286I | GDGCHC | 1 cut(s) | 680 |
| Bsp1407I | TGTACA | 1 cut(s) | 119 |
| Bsp143I | GATC | 1 cut(s) | 32 |
| Bsp19I | CCATGG | 1 cut(s) | 944 |
| BspACI | CCGC | 2 cut(s) | 23, 150 |
| BspANI | GGCC | 4 cut(s) | 227, 817, 913, 997 |
| BspCNI | CTCAG | 1 cut(s) | 499 |
| BspFNI | CGCG | 1 cut(s) | 756 |
| BspLI | GGNNCC | 2 cut(s) | 167, 1035 |
| BspMI | ACCTGC | 1 cut(s) | 565 |
| BsrDI | GCAATG | 1 cut(s) | 553 |
| BsrGI | TGTACA | 1 cut(s) | 119 |
| BsrI | ACTGG | 1 cut(s) | 539 |
| BssECI | CCNNGG | 3 cut(s) | 78, 418, 944 |
| BssMI | GATC | 1 cut(s) | 32 |
| BssT1I | CCWWGG | 2 cut(s) | 78, 944 |
| Bst2UI | CCWGG | 2 cut(s) | 420, 1008 |
| Bst4CI | ACNGT | 4 cut(s) | 63, 387, 411, 485 |
| Bst6I | CTCTTC | 1 cut(s) | 953 |
| BstAUI | TGTACA | 1 cut(s) | 119 |
| BstC8I | GCNNGC | 2 cut(s) | 738, 1198 |
| BstDEI | CTNAG | 3 cut(s) | 507, 845, 1115 |
| BstDSI | CCRYGG | 1 cut(s) | 944 |
| BstEII | GGTNACC | 1 cut(s) | 1160 |
| BstF5I | GGATG | 3 cut(s) | 21, 772, 1245 |
| BstFNI | CGCG | 1 cut(s) | 756 |
| BstKTI | GATC | 1 cut(s) | 35 |
| BstMBI | GATC | 1 cut(s) | 32 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 903, 946, 1206 |
| BstNI | CCWGG | 2 cut(s) | 420, 1008 |
| BstNSI | RCATGY | 5 cut(s) | 687, 720, 740, 973, 1200 |
| BstPI | GGTNACC | 1 cut(s) | 1160 |
| BstSCI | CCNGG | 2 cut(s) | 418, 1006 |
| BstSLI | GKGCMC | 1 cut(s) | 680 |
| BstUI | CGCG | 1 cut(s) | 756 |
| BstV1I | GCAGC | 4 cut(s) | 254, 278, 906, 1254 |
| BstV2I | GAAGAC | 1 cut(s) | 587 |
| BstX2I | RGATCY | 1 cut(s) | 32 |
| BstYI | RGATCY | 1 cut(s) | 32 |
| BsuRI | GGCC | 4 cut(s) | 227, 817, 913, 997 |
| BtgI | CCRYGG | 1 cut(s) | 944 |
| BtgZI | GCGATG | 1 cut(s) | 771 |
| BtsCI | GGATG | 3 cut(s) | 21, 772, 1245 |
| BveI | ACCTGC | 1 cut(s) | 565 |
| Cac8I | GCNNGC | 2 cut(s) | 738, 1198 |
| CaiI | CAGNNNCTG | 1 cut(s) | 245 |
| Cfr13I | GGNCC | 2 cut(s) | 166, 995 |
| CseI | GACGC | 1 cut(s) | 407 |
| Csp6I | GTAC | 3 cut(s) | 120, 714, 901 |
| CviQI | GTAC | 3 cut(s) | 120, 714, 901 |
| DdeI | CTNAG | 3 cut(s) | 507, 845, 1115 |
| DpnI | GATC | 1 cut(s) | 34 |
| DpnII | GATC | 1 cut(s) | 32 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1022 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1022 |
| EaeI | YGGCCR | 1 cut(s) | 815 |
| Eam1104I | CTCTTC | 1 cut(s) | 953 |
| EarI | CTCTTC | 1 cut(s) | 953 |
| Eco130I | CCWWGG | 2 cut(s) | 78, 944 |
| Eco47I | GGWCC | 1 cut(s) | 166 |
| Eco91I | GGTNACC | 1 cut(s) | 1160 |
| EcoO65I | GGTNACC | 1 cut(s) | 1160 |
| EcoRII | CCWGG | 2 cut(s) | 418, 1006 |
| EcoT14I | CCWWGG | 2 cut(s) | 78, 944 |
| EcoT22I | ATGCAT | 1 cut(s) | 1198 |
| ErhI | CCWWGG | 2 cut(s) | 78, 944 |
| FaqI | GGGAC | 1 cut(s) | 179 |
| FblI | GTMKAC | 1 cut(s) | 1026 |
| Fnu4HI | GCNGC | 4 cut(s) | 243, 267, 895, 1268 |
| FokI | GGATG | 3 cut(s) | 28, 759, 1232 |
| Fsp4HI | GCNGC | 4 cut(s) | 243, 267, 895, 1268 |
| FspBI | CTAG | 3 cut(s) | 596, 837, 1235 |
| GluI | GCNGC | 4 cut(s) | 243, 267, 895, 1268 |
| HaeIII | GGCC | 4 cut(s) | 227, 817, 913, 997 |
| HgaI | GACGC | 1 cut(s) | 407 |
| HincII | GTYRAC | 2 cut(s) | 139, 978 |
| HindII | GTYRAC | 2 cut(s) | 139, 978 |
| HinfI | GANTC | 5 cut(s) | 236, 251, 275, 281, 724 |
| HpaI | GTTAAC | 1 cut(s) | 978 |
| HphI | GGTGA | 2 cut(s) | 67, 466 |
| Hpy166II | GTNNAC | 5 cut(s) | 139, 304, 978, 1027, 1124 |
| Hpy188I | TCNGA | 7 cut(s) | 280, 508, 529, 709, 729, 832, 865 |
| Hpy188III | TCNNGA | 2 cut(s) | 1132, 1285 |
| Hpy8I | GTNNAC | 5 cut(s) | 139, 304, 978, 1027, 1124 |
| HpyAV | CCTTC | 3 cut(s) | 1061, 1250, 1291 |
| HpyCH4III | ACNGT | 4 cut(s) | 63, 387, 411, 485 |
| HpyCH4V | TGCA | 7 cut(s) | 266, 350, 668, 785, 854, 1091, 1196 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 903, 946, 1206 |
| HpyF3I | CTNAG | 3 cut(s) | 507, 845, 1115 |
| KspAI | GTTAAC | 1 cut(s) | 978 |
| Kzo9I | GATC | 1 cut(s) | 32 |
| Lsp1109I | GCAGC | 4 cut(s) | 254, 278, 906, 1254 |
| LweI | GCATC | 6 cut(s) | 181, 253, 337, 655, 772, 1078 |
| MaeI | CTAG | 3 cut(s) | 596, 837, 1235 |
| MaeIII | GTNAC | 3 cut(s) | 55, 371, 1160 |
| MalI | GATC | 1 cut(s) | 34 |
| MboI | GATC | 1 cut(s) | 32 |
| MboII | GAAGA | 4 cut(s) | 527, 592, 970, 1250 |
| MflI | RGATCY | 1 cut(s) | 32 |
| MhlI | GDGCHC | 1 cut(s) | 680 |
| MlsI | TGGCCA | 1 cut(s) | 817 |
| MluCI | AATT | 5 cut(s) | 47, 71, 329, 615, 669 |
| MluNI | TGGCCA | 1 cut(s) | 817 |
| MlyI | GAGTC | 1 cut(s) | 733 |
| MnlI | CCTC | 8 cut(s) | 217, 450, 565, 571, 703, 951, 1112, 1310 |
| Mox20I | TGGCCA | 1 cut(s) | 817 |
| Mph1103I | ATGCAT | 1 cut(s) | 1198 |
| MscI | TGGCCA | 1 cut(s) | 817 |
| MseI | TTAA | 5 cut(s) | 444, 672, 890, 977, 1182 |
| Msp20I | TGGCCA | 1 cut(s) | 817 |
| MspA1I | CMGCKG | 3 cut(s) | 245, 779, 906 |
| MspR9I | CCNGG | 2 cut(s) | 420, 1008 |
| MvaI | CCWGG | 2 cut(s) | 420, 1008 |
| MvnI | CGCG | 1 cut(s) | 756 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 903, 946, 1206 |
| NcoI | CCATGG | 1 cut(s) | 944 |
| NdeII | GATC | 1 cut(s) | 32 |
| NlaIV | GGNNCC | 2 cut(s) | 167, 1035 |
| NmeAIII | GCCGAG | 1 cut(s) | 16 |
| NmuCI | GTSAC | 1 cut(s) | 55 |
| NsiI | ATGCAT | 1 cut(s) | 1198 |
| NspI | RCATGY | 5 cut(s) | 687, 720, 740, 973, 1200 |
| PaeI | GCATGC | 2 cut(s) | 740, 1200 |
| PciI | ACATGT | 3 cut(s) | 683, 716, 969 |
| PfeI | GAWTC | 4 cut(s) | 236, 251, 275, 281 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 824, 1157 |
| PkrI | GCNGC | 4 cut(s) | 244, 268, 896, 1269 |
| PleI | GAGTC | 1 cut(s) | 732 |
| PpsI | GAGTC | 1 cut(s) | 732 |
| PscI | ACATGT | 3 cut(s) | 683, 716, 969 |
| Psp6I | CCWGG | 2 cut(s) | 418, 1006 |
| PspEI | GGTNACC | 1 cut(s) | 1160 |
| PspGI | CCWGG | 2 cut(s) | 418, 1006 |
| PspN4I | GGNNCC | 2 cut(s) | 167, 1035 |
| PspPI | GGNCC | 2 cut(s) | 166, 995 |
| PstNI | CAGNNNCTG | 1 cut(s) | 245 |
| PsuI | RGATCY | 1 cut(s) | 32 |
| PvuII | CAGCTG | 3 cut(s) | 245, 779, 906 |
| RsaI | GTAC | 3 cut(s) | 121, 715, 902 |
| RsaNI | GTAC | 3 cut(s) | 120, 714, 901 |
| SaqAI | TTAA | 5 cut(s) | 444, 672, 890, 977, 1182 |
| SatI | GCNGC | 4 cut(s) | 243, 267, 895, 1268 |
| Sau3AI | GATC | 1 cut(s) | 32 |
| Sau96I | GGNCC | 2 cut(s) | 166, 995 |
| SchI | GAGTC | 1 cut(s) | 733 |
| ScrFI | CCNGG | 2 cut(s) | 420, 1008 |
| SduI | GDGCHC | 1 cut(s) | 680 |
| SfaNI | GCATC | 6 cut(s) | 181, 253, 337, 655, 772, 1078 |
| SinI | GGWCC | 1 cut(s) | 166 |
| SphI | GCATGC | 2 cut(s) | 740, 1200 |
| Sse9I | AATT | 5 cut(s) | 47, 71, 329, 615, 669 |
| SsiI | CCGC | 2 cut(s) | 23, 150 |
| SspMI | CTAG | 3 cut(s) | 596, 837, 1235 |
| StyD4I | CCNGG | 2 cut(s) | 418, 1006 |
| StyI | CCWWGG | 2 cut(s) | 78, 944 |
| TaaI | ACNGT | 4 cut(s) | 63, 387, 411, 485 |
| TasI | AATT | 5 cut(s) | 47, 71, 329, 615, 669 |
| TatI | WGTACW | 2 cut(s) | 119, 900 |
| TfiI | GAWTC | 4 cut(s) | 236, 251, 275, 281 |
| Tru1I | TTAA | 5 cut(s) | 444, 672, 890, 977, 1182 |
| Tru9I | TTAA | 5 cut(s) | 444, 672, 890, 977, 1182 |
| TseFI | GTSAC | 1 cut(s) | 55 |
| TseI | GCWGC | 4 cut(s) | 242, 266, 894, 1267 |
| Tsp45I | GTSAC | 1 cut(s) | 55 |
| TspDTI | ATGAA | 7 cut(s) | 264, 342, 608, 780, 822, 876, 971 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 824, 1157 |
| VpaK11BI | GGWCC | 1 cut(s) | 166 |
| XapI | RAATTY | 2 cut(s) | 71, 615 |
| XceI | RCATGY | 5 cut(s) | 687, 720, 740, 973, 1200 |
| XmiI | GTMKAC | 1 cut(s) | 1026 |
| XspI | CTAG | 3 cut(s) | 596, 837, 1235 |
| Zsp2I | ATGCAT | 1 cut(s) | 1198 |