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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 952 |
| AclWI | GGATC | 2 cut(s) | 573, 821 |
| AcsI | RAATTY | 4 cut(s) | 180, 221, 799, 919 |
| AfaI | GTAC | 2 cut(s) | 335, 516 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 330 |
| AgsI | TTSAA | 8 cut(s) | 136, 185, 349, 556, 581, 590, 805, 869 |
| AluBI | AGCT | 5 cut(s) | 172, 214, 289, 717, 883 |
| AluI | AGCT | 5 cut(s) | 172, 214, 289, 717, 883 |
| Alw26I | GTCTC | 2 cut(s) | 131, 634 |
| AlwI | GGATC | 2 cut(s) | 573, 821 |
| AoxI | GGCC | 2 cut(s) | 138, 295 |
| ApeKI | GCWGC | 1 cut(s) | 440 |
| ApoI | RAATTY | 4 cut(s) | 180, 221, 799, 919 |
| AseI | ATTAAT | 1 cut(s) | 465 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 224 |
| AspS9I | GGNCC | 2 cut(s) | 296, 500 |
| AsuC2I | CCSGG | 1 cut(s) | 653 |
| AsuHPI | GGTGA | 2 cut(s) | 854, 941 |
| AsuII | TTCGAA | 1 cut(s) | 327 |
| AvaII | GGWCC | 1 cut(s) | 500 |
| BbvI | GCAGC | 1 cut(s) | 427 |
| BccI | CCATC | 8 cut(s) | 63, 241, 276, 306, 381, 491, 920, 950 |
| BciVI | GTATCC | 1 cut(s) | 330 |
| BclI | TGATCA | 1 cut(s) | 457 |
| BcnI | CCSGG | 1 cut(s) | 653 |
| BcoDI | GTCTC | 2 cut(s) | 131, 634 |
| BfaI | CTAG | 4 cut(s) | 504, 626, 633, 939 |
| BfuI | GTATCC | 1 cut(s) | 330 |
| BisI | GCNGC | 1 cut(s) | 441 |
| BlsI | GCNGC | 1 cut(s) | 442 |
| Bme1390I | CCNGG | 1 cut(s) | 653 |
| Bme18I | GGWCC | 1 cut(s) | 500 |
| BmgT120I | GGNCC | 2 cut(s) | 296, 500 |
| BmiI | GGNNCC | 2 cut(s) | 365, 726 |
| BmrFI | CCNGG | 1 cut(s) | 653 |
| Bpu14I | TTCGAA | 1 cut(s) | 327 |
| BpuEI | CTTGAG | 2 cut(s) | 236, 893 |
| BpuMI | CCSGG | 1 cut(s) | 653 |
| BsaJI | CCNNGG | 1 cut(s) | 561 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 886, 916 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 330 |
| Bse1I | ACTGG | 1 cut(s) | 98 |
| Bse3DI | GCAATG | 2 cut(s) | 69, 387 |
| BseDI | CCNNGG | 1 cut(s) | 561 |
| BseGI | GGATG | 4 cut(s) | 10, 321, 373, 961 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 330 |
| BseMI | GCAATG | 2 cut(s) | 69, 387 |
| BseNI | ACTGG | 1 cut(s) | 98 |
| BseRI | GAGGAG | 1 cut(s) | 866 |
| BseXI | GCAGC | 1 cut(s) | 427 |
| BseYI | CCCAGC | 1 cut(s) | 443 |
| Bsh1285I | CGRYCG | 1 cut(s) | 909 |
| BshFI | GGCC | 2 cut(s) | 140, 297 |
| BsiEI | CGRYCG | 1 cut(s) | 909 |
| BsiSI | CCGG | 1 cut(s) | 653 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 330 |
| BsmAI | GTCTC | 2 cut(s) | 131, 634 |
| BsnI | GGCC | 2 cut(s) | 140, 297 |
| Bsp119I | TTCGAA | 1 cut(s) | 327 |
| Bsp143I | GATC | 5 cut(s) | 7, 457, 565, 826, 906 |
| BspACI | CCGC | 1 cut(s) | 952 |
| BspANI | GGCC | 2 cut(s) | 140, 297 |
| BspLI | GGNNCC | 2 cut(s) | 365, 726 |
| BspPI | GGATC | 2 cut(s) | 573, 821 |
| BspT104I | TTCGAA | 1 cut(s) | 327 |
| BsrDI | GCAATG | 2 cut(s) | 69, 387 |
| BsrI | ACTGG | 1 cut(s) | 98 |
| BssECI | CCNNGG | 1 cut(s) | 561 |
| BssMI | GATC | 5 cut(s) | 7, 457, 565, 826, 906 |
| BssT1I | CCWWGG | 1 cut(s) | 561 |
| Bst4CI | ACNGT | 4 cut(s) | 49, 205, 368, 740 |
| Bst6I | CTCTTC | 1 cut(s) | 134 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 437 |
| BstBI | TTCGAA | 1 cut(s) | 327 |
| BstDEI | CTNAG | 1 cut(s) | 481 |
| BstEII | GGTNACC | 1 cut(s) | 929 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 328 |
| BstF5I | GGATG | 4 cut(s) | 10, 321, 373, 961 |
| BstKTI | GATC | 5 cut(s) | 10, 460, 568, 829, 909 |
| BstMAI | GTCTC | 2 cut(s) | 131, 634 |
| BstMBI | GATC | 5 cut(s) | 7, 457, 565, 826, 906 |
| BstMCI | CGRYCG | 1 cut(s) | 909 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 413, 437 |
| BstPI | GGTNACC | 1 cut(s) | 929 |
| BstSCI | CCNGG | 1 cut(s) | 651 |
| BstV1I | GCAGC | 1 cut(s) | 427 |
| BstX2I | RGATCY | 1 cut(s) | 565 |
| BstYI | RGATCY | 1 cut(s) | 565 |
| BsuI | GTATCC | 1 cut(s) | 330 |
| BsuRI | GGCC | 2 cut(s) | 140, 297 |
| BtgZI | GCGATG | 1 cut(s) | 388 |
| BtsCI | GGATG | 4 cut(s) | 10, 321, 373, 961 |
| BtsI | GCAGTG | 1 cut(s) | 601 |
| BtsIMutI | CAGTG | 2 cut(s) | 532, 601 |
| Cfr13I | GGNCC | 2 cut(s) | 296, 500 |
| Csp6I | GTAC | 2 cut(s) | 334, 515 |
| CviAII | CATG | 4 cut(s) | 35, 250, 337, 835 |
| CviJI | RGCY | 7 cut(s) | 140, 172, 214, 289, 297, 717, 883 |
| CviKI_1 | RGCY | 7 cut(s) | 140, 172, 214, 289, 297, 717, 883 |
| CviQI | GTAC | 2 cut(s) | 334, 515 |
| DdeI | CTNAG | 1 cut(s) | 481 |
| DpnI | GATC | 5 cut(s) | 9, 459, 567, 828, 908 |
| DpnII | GATC | 5 cut(s) | 7, 457, 565, 826, 906 |
| Eam1104I | CTCTTC | 1 cut(s) | 134 |
| EarI | CTCTTC | 1 cut(s) | 134 |
| Eco130I | CCWWGG | 1 cut(s) | 561 |
| Eco47I | GGWCC | 1 cut(s) | 500 |
| Eco91I | GGTNACC | 1 cut(s) | 929 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 328 |
| EcoO65I | GGTNACC | 1 cut(s) | 929 |
| EcoT14I | CCWWGG | 1 cut(s) | 561 |
| ErhI | CCWWGG | 1 cut(s) | 561 |
| FaeI | CATG | 4 cut(s) | 38, 253, 340, 838 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 177, 209 |
| FatI | CATG | 4 cut(s) | 34, 249, 336, 834 |
| FauI | CCCGC | 1 cut(s) | 945 |
| FauNDI | CATATG | 1 cut(s) | 143 |
| FbaI | TGATCA | 1 cut(s) | 457 |
| Fnu4HI | GCNGC | 1 cut(s) | 441 |
| FokI | GGATG | 4 cut(s) | 17, 328, 360, 968 |
| Fsp4HI | GCNGC | 1 cut(s) | 441 |
| FspBI | CTAG | 4 cut(s) | 504, 626, 633, 939 |
| GluI | GCNGC | 1 cut(s) | 441 |
| GsaI | CCCAGC | 1 cut(s) | 447 |
| HaeIII | GGCC | 2 cut(s) | 140, 297 |
| HapII | CCGG | 1 cut(s) | 653 |
| Hin1II | CATG | 4 cut(s) | 38, 253, 340, 838 |
| HincII | GTYRAC | 2 cut(s) | 190, 751 |
| HindII | GTYRAC | 2 cut(s) | 190, 751 |
| HinfI | GANTC | 3 cut(s) | 253, 681, 861 |
| HpaII | CCGG | 1 cut(s) | 653 |
| HphI | GGTGA | 2 cut(s) | 854, 941 |
| Hpy166II | GTNNAC | 2 cut(s) | 190, 751 |
| Hpy188I | TCNGA | 3 cut(s) | 475, 511, 906 |
| Hpy188III | TCNNGA | 2 cut(s) | 377, 569 |
| Hpy8I | GTNNAC | 2 cut(s) | 190, 751 |
| HpyAV | CCTTC | 4 cut(s) | 334, 374, 634, 959 |
| HpyCH4III | ACNGT | 4 cut(s) | 49, 205, 368, 740 |
| HpyCH4V | TGCA | 4 cut(s) | 74, 147, 387, 594 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 413, 437 |
| HpyF3I | CTNAG | 1 cut(s) | 481 |
| Hsp92II | CATG | 4 cut(s) | 38, 253, 340, 838 |
| Ksp22I | TGATCA | 1 cut(s) | 457 |
| Kzo9I | GATC | 5 cut(s) | 7, 457, 565, 826, 906 |
| LmnI | GCTCC | 1 cut(s) | 69 |
| LpnPI | CCDG | 5 cut(s) | 111, 390, 429, 666, 741 |
| Lsp1109I | GCAGC | 1 cut(s) | 427 |
| MaeI | CTAG | 4 cut(s) | 504, 626, 633, 939 |
| MaeIII | GTNAC | 3 cut(s) | 368, 929, 959 |
| MalI | GATC | 5 cut(s) | 9, 459, 567, 828, 908 |
| MboI | GATC | 5 cut(s) | 7, 457, 565, 826, 906 |
| MboII | GAAGA | 5 cut(s) | 121, 124, 217, 232, 422 |
| MflI | RGATCY | 1 cut(s) | 565 |
| MluCI | AATT | 7 cut(s) | 75, 180, 221, 550, 799, 919, 943 |
| MlyI | GAGTC | 2 cut(s) | 690, 870 |
| MmeI | TCCRAC | 1 cut(s) | 838 |
| MnlI | CCTC | 5 cut(s) | 62, 538, 844, 847, 912 |
| MroXI | GAANNNNTTC | 1 cut(s) | 224 |
| MseI | TTAA | 7 cut(s) | 117, 465, 549, 657, 687, 768, 822 |
| MslI | CAYNNNNRTG | 2 cut(s) | 465, 822 |
| MspI | CCGG | 1 cut(s) | 653 |
| MspR9I | CCNGG | 1 cut(s) | 653 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 413, 437 |
| NciI | CCSGG | 1 cut(s) | 653 |
| NdeI | CATATG | 1 cut(s) | 143 |
| NdeII | GATC | 5 cut(s) | 7, 457, 565, 826, 906 |
| NlaIII | CATG | 4 cut(s) | 38, 253, 340, 838 |
| NlaIV | GGNNCC | 2 cut(s) | 365, 726 |
| NmuCI | GTSAC | 1 cut(s) | 929 |
| NspV | TTCGAA | 1 cut(s) | 327 |
| PdmI | GAANNNNTTC | 1 cut(s) | 224 |
| PfeI | GAWTC | 1 cut(s) | 253 |
| PflFI | GACNNNGTC | 1 cut(s) | 194 |
| PkrI | GCNGC | 1 cut(s) | 442 |
| Ple19I | CGATCG | 1 cut(s) | 909 |
| PleI | GAGTC | 2 cut(s) | 689, 869 |
| PpsI | GAGTC | 2 cut(s) | 689, 869 |
| PshBI | ATTAAT | 1 cut(s) | 465 |
| PspEI | GGTNACC | 1 cut(s) | 929 |
| PspFI | CCCAGC | 1 cut(s) | 443 |
| PspN4I | GGNNCC | 2 cut(s) | 365, 726 |
| PspPI | GGNCC | 2 cut(s) | 296, 500 |
| PsuI | RGATCY | 1 cut(s) | 565 |
| PsyI | GACNNNGTC | 1 cut(s) | 194 |
| PvuI | CGATCG | 1 cut(s) | 909 |
| RsaI | GTAC | 2 cut(s) | 335, 516 |
| RsaNI | GTAC | 2 cut(s) | 334, 515 |
| RseI | CAYNNNNRTG | 2 cut(s) | 465, 822 |
| SaqAI | TTAA | 7 cut(s) | 117, 465, 549, 657, 687, 768, 822 |
| SatI | GCNGC | 1 cut(s) | 441 |
| Sau3AI | GATC | 5 cut(s) | 7, 457, 565, 826, 906 |
| Sau96I | GGNCC | 2 cut(s) | 296, 500 |
| SchI | GAGTC | 2 cut(s) | 690, 870 |
| ScrFI | CCNGG | 1 cut(s) | 653 |
| SfuI | TTCGAA | 1 cut(s) | 327 |
| SinI | GGWCC | 1 cut(s) | 500 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 465, 822 |
| SmlI | CTYRAG | 2 cut(s) | 215, 872 |
| SmoI | CTYRAG | 2 cut(s) | 215, 872 |
| Sse9I | AATT | 7 cut(s) | 75, 180, 221, 550, 799, 919, 943 |
| SsiI | CCGC | 1 cut(s) | 952 |
| SspMI | CTAG | 4 cut(s) | 504, 626, 633, 939 |
| StyD4I | CCNGG | 1 cut(s) | 651 |
| StyI | CCWWGG | 1 cut(s) | 561 |
| TaaI | ACNGT | 4 cut(s) | 49, 205, 368, 740 |
| TaqI | TCGA | 4 cut(s) | 198, 243, 327, 909 |
| TasI | AATT | 7 cut(s) | 75, 180, 221, 550, 799, 919, 943 |
| TfiI | GAWTC | 1 cut(s) | 253 |
| Tru1I | TTAA | 7 cut(s) | 117, 465, 549, 657, 687, 768, 822 |
| Tru9I | TTAA | 7 cut(s) | 117, 465, 549, 657, 687, 768, 822 |
| TscAI | CASTG | 2 cut(s) | 532, 601 |
| TseFI | GTSAC | 1 cut(s) | 929 |
| TseI | GCWGC | 1 cut(s) | 440 |
| Tsp45I | GTSAC | 1 cut(s) | 929 |
| TspDTI | ATGAA | 5 cut(s) | 41, 245, 353, 594, 823 |
| TspRI | CASTG | 2 cut(s) | 532, 601 |
| Tth111I | GACNNNGTC | 1 cut(s) | 194 |
| VpaK11BI | GGWCC | 1 cut(s) | 500 |
| VspI | ATTAAT | 1 cut(s) | 465 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 328 |
| XapI | RAATTY | 4 cut(s) | 180, 221, 799, 919 |
| XmnI | GAANNNNTTC | 1 cut(s) | 224 |
| XspI | CTAG | 4 cut(s) | 504, 626, 633, 939 |