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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1034 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 288 |
| Acc36I | ACCTGC | 1 cut(s) | 1034 |
| AccB1I | GGYRCC | 1 cut(s) | 788 |
| AccI | GTMKAC | 2 cut(s) | 109, 706 |
| AccII | CGCG | 1 cut(s) | 1117 |
| AciI | CCGC | 2 cut(s) | 561, 1163 |
| AcuI | CTGAAG | 1 cut(s) | 735 |
| AfaI | GTAC | 4 cut(s) | 40, 252, 587, 602 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 732, 756, 785 |
| AgeI | ACCGGT | 1 cut(s) | 364 |
| AjnI | CCWGG | 1 cut(s) | 459 |
| AleI | CACNNNNGTG | 1 cut(s) | 837 |
| AluBI | AGCT | 3 cut(s) | 439, 820, 830 |
| AluI | AGCT | 3 cut(s) | 439, 820, 830 |
| Ama87I | CYCGRG | 1 cut(s) | 910 |
| ApeKI | GCWGC | 4 cut(s) | 77, 80, 771, 817 |
| AsiGI | ACCGGT | 1 cut(s) | 364 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 176, 611 |
| AspLEI | GCGC | 1 cut(s) | 1117 |
| AspS9I | GGNCC | 4 cut(s) | 563, 735, 1049, 1063 |
| AsuC2I | CCSGG | 1 cut(s) | 57 |
| AsuHPI | GGTGA | 4 cut(s) | 433, 515, 637, 824 |
| AvaI | CYCGRG | 1 cut(s) | 910 |
| AvaII | GGWCC | 4 cut(s) | 563, 735, 1049, 1063 |
| AxyI | CCTNAGG | 1 cut(s) | 645 |
| BanI | GGYRCC | 1 cut(s) | 788 |
| BbsI | GAAGAC | 1 cut(s) | 68 |
| BbvI | GCAGC | 4 cut(s) | 64, 67, 758, 829 |
| BccI | CCATC | 5 cut(s) | 65, 543, 573, 615, 803 |
| BceAI | ACGGC | 1 cut(s) | 1238 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 406, 440 |
| BciT130I | CCWGG | 1 cut(s) | 461 |
| BciVI | GTATCC | 1 cut(s) | 1222 |
| BcnI | CCSGG | 1 cut(s) | 57 |
| BfaI | CTAG | 5 cut(s) | 165, 440, 821, 827, 1182 |
| BfuAI | ACCTGC | 1 cut(s) | 1034 |
| BfuI | GTATCC | 1 cut(s) | 1222 |
| BisI | GCNGC | 4 cut(s) | 78, 81, 772, 818 |
| BlsI | GCNGC | 4 cut(s) | 79, 82, 773, 819 |
| Bme1390I | CCNGG | 2 cut(s) | 57, 461 |
| Bme18I | GGWCC | 4 cut(s) | 563, 735, 1049, 1063 |
| BmeT110I | CYCGRG | 1 cut(s) | 910 |
| BmgT120I | GGNCC | 4 cut(s) | 563, 735, 1049, 1063 |
| BmiI | GGNNCC | 4 cut(s) | 736, 737, 790, 1065 |
| BmrFI | CCNGG | 2 cut(s) | 57, 461 |
| BmrI | ACTGGG | 1 cut(s) | 329 |
| BmsI | GCATC | 4 cut(s) | 16, 709, 850, 1156 |
| BmuI | ACTGGG | 1 cut(s) | 329 |
| BpiI | GAAGAC | 1 cut(s) | 68 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 680, 712 |
| BpuEI | CTTGAG | 1 cut(s) | 503 |
| BpuMI | CCSGG | 1 cut(s) | 57 |
| Bsa29I | ATCGAT | 1 cut(s) | 426 |
| BsaJI | CCNNGG | 3 cut(s) | 34, 56, 911 |
| BsaWI | WCCGGW | 4 cut(s) | 229, 364, 384, 565 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 315, 345 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 732, 756, 785 |
| Bse118I | RCCGGY | 2 cut(s) | 287, 364 |
| Bse1I | ACTGG | 2 cut(s) | 142, 335 |
| Bse21I | CCTNAGG | 1 cut(s) | 645 |
| Bse3DI | GCAATG | 2 cut(s) | 654, 1176 |
| BseBI | CCWGG | 1 cut(s) | 461 |
| BseCI | ATCGAT | 1 cut(s) | 426 |
| BseDI | CCNNGG | 3 cut(s) | 34, 56, 911 |
| BseGI | GGATG | 5 cut(s) | 76, 242, 588, 626, 1171 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 732, 756, 785 |
| BseMI | GCAATG | 2 cut(s) | 654, 1176 |
| BseMII | CTCAG | 3 cut(s) | 636, 711, 870 |
| BseNI | ACTGG | 2 cut(s) | 142, 335 |
| BseXI | GCAGC | 4 cut(s) | 64, 67, 758, 829 |
| Bsh1236I | CGCG | 1 cut(s) | 1117 |
| BshNI | GGYRCC | 1 cut(s) | 788 |
| BshTI | ACCGGT | 1 cut(s) | 364 |
| BshVI | ATCGAT | 1 cut(s) | 426 |
| BsiHKCI | CYCGRG | 1 cut(s) | 910 |
| BsiSI | CCGG | 6 cut(s) | 56, 230, 288, 365, 385, 566 |
| BslFI | GGGAC | 2 cut(s) | 748, 1049 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 732, 756, 785 |
| BsmFI | GGGAC | 2 cut(s) | 748, 1049 |
| BsoBI | CYCGRG | 1 cut(s) | 910 |
| Bsp143I | GATC | 3 cut(s) | 195, 423, 1130 |
| BspACI | CCGC | 2 cut(s) | 561, 1163 |
| BspCNI | CTCAG | 3 cut(s) | 637, 710, 871 |
| BspDI | ATCGAT | 1 cut(s) | 426 |
| BspFNI | CGCG | 1 cut(s) | 1117 |
| BspLI | GGNNCC | 4 cut(s) | 736, 737, 790, 1065 |
| BspMI | ACCTGC | 1 cut(s) | 1034 |
| BspT107I | GGYRCC | 1 cut(s) | 788 |
| BsrDI | GCAATG | 2 cut(s) | 654, 1176 |
| BsrFI | RCCGGY | 2 cut(s) | 287, 364 |
| BsrI | ACTGG | 2 cut(s) | 142, 335 |
| BssAI | RCCGGY | 2 cut(s) | 287, 364 |
| BssECI | CCNNGG | 3 cut(s) | 34, 56, 911 |
| BssMI | GATC | 3 cut(s) | 195, 423, 1130 |
| BssNAI | GTATAC | 2 cut(s) | 110, 707 |
| Bst1107I | GTATAC | 2 cut(s) | 110, 707 |
| Bst2UI | CCWGG | 1 cut(s) | 461 |
| Bst4CI | ACNGT | 5 cut(s) | 226, 472, 532, 730, 1145 |
| BstC8I | GCNNGC | 3 cut(s) | 453, 479, 1041 |
| BstDEI | CTNAG | 4 cut(s) | 66, 645, 697, 879 |
| BstEII | GGTNACC | 1 cut(s) | 153 |
| BstF5I | GGATG | 5 cut(s) | 76, 242, 588, 626, 1171 |
| BstFNI | CGCG | 1 cut(s) | 1117 |
| BstHHI | GCGC | 1 cut(s) | 1117 |
| BstKTI | GATC | 3 cut(s) | 198, 426, 1133 |
| BstMBI | GATC | 3 cut(s) | 195, 423, 1130 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1013 |
| BstNI | CCWGG | 1 cut(s) | 461 |
| BstPI | GGTNACC | 1 cut(s) | 153 |
| BstSCI | CCNGG | 2 cut(s) | 55, 459 |
| BstUI | CGCG | 1 cut(s) | 1117 |
| BstV1I | GCAGC | 4 cut(s) | 64, 67, 758, 829 |
| BstV2I | GAAGAC | 1 cut(s) | 68 |
| BstZ17I | GTATAC | 2 cut(s) | 110, 707 |
| Bsu15I | ATCGAT | 1 cut(s) | 426 |
| Bsu36I | CCTNAGG | 1 cut(s) | 645 |
| BsuI | GTATCC | 1 cut(s) | 1222 |
| BsuTUI | ATCGAT | 1 cut(s) | 426 |
| BtgZI | GCGATG | 1 cut(s) | 39 |
| BtsCI | GGATG | 5 cut(s) | 76, 242, 588, 626, 1171 |
| BtsIMutI | CAGTG | 5 cut(s) | 114, 135, 726, 876, 1150 |
| BveI | ACCTGC | 1 cut(s) | 1034 |
| Cac8I | GCNNGC | 3 cut(s) | 453, 479, 1041 |
| CfoI | GCGC | 1 cut(s) | 1117 |
| Cfr10I | RCCGGY | 2 cut(s) | 287, 364 |
| Cfr13I | GGNCC | 4 cut(s) | 563, 735, 1049, 1063 |
| ClaI | ATCGAT | 1 cut(s) | 426 |
| CpoI | CGGWCCG | 1 cut(s) | 563 |
| CsiI | ACCWGGT | 1 cut(s) | 459 |
| Csp6I | GTAC | 4 cut(s) | 39, 251, 586, 601 |
| CspAI | ACCGGT | 1 cut(s) | 364 |
| CspI | CGGWCCG | 1 cut(s) | 563 |
| CviAII | CATG | 4 cut(s) | 94, 302, 604, 1085 |
| CviJI | RGCY | 9 cut(s) | 77, 128, 164, 439, 760, 771, 820, 830, 1039 |
| CviKI_1 | RGCY | 9 cut(s) | 77, 128, 164, 439, 760, 771, 820, 830, 1039 |
| CviQI | GTAC | 4 cut(s) | 39, 251, 586, 601 |
| DdeI | CTNAG | 4 cut(s) | 66, 645, 697, 879 |
| DpnI | GATC | 3 cut(s) | 197, 425, 1132 |
| DpnII | GATC | 3 cut(s) | 195, 423, 1130 |
| DraI | TTTAAA | 1 cut(s) | 765 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 288 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 288 |
| Eco32I | GATATC | 1 cut(s) | 1082 |
| Eco47I | GGWCC | 4 cut(s) | 563, 735, 1049, 1063 |
| Eco57I | CTGAAG | 1 cut(s) | 735 |
| Eco81I | CCTNAGG | 1 cut(s) | 645 |
| Eco88I | CYCGRG | 1 cut(s) | 910 |
| Eco91I | GGTNACC | 1 cut(s) | 153 |
| EcoO109I | RGGNCCY | 2 cut(s) | 735, 1063 |
| EcoO65I | GGTNACC | 1 cut(s) | 153 |
| EcoRII | CCWGG | 1 cut(s) | 459 |
| EcoRV | GATATC | 1 cut(s) | 1082 |
| FaeI | CATG | 4 cut(s) | 97, 305, 607, 1088 |
| FaqI | GGGAC | 2 cut(s) | 748, 1049 |
| FatI | CATG | 4 cut(s) | 93, 301, 603, 1084 |
| FauNDI | CATATG | 1 cut(s) | 885 |
| FblI | GTMKAC | 2 cut(s) | 109, 706 |
| Fnu4HI | GCNGC | 4 cut(s) | 78, 81, 772, 818 |
| FokI | GGATG | 5 cut(s) | 83, 229, 595, 633, 1178 |
| Fsp4HI | GCNGC | 4 cut(s) | 78, 81, 772, 818 |
| FspBI | CTAG | 5 cut(s) | 165, 440, 821, 827, 1182 |
| GlaI | GCGC | 1 cut(s) | 1116 |
| GluI | GCNGC | 4 cut(s) | 78, 81, 772, 818 |
| HapII | CCGG | 6 cut(s) | 56, 230, 288, 365, 385, 566 |
| HhaI | GCGC | 1 cut(s) | 1117 |
| Hin1II | CATG | 4 cut(s) | 97, 305, 607, 1088 |
| Hin6I | GCGC | 1 cut(s) | 1115 |
| HinP1I | GCGC | 1 cut(s) | 1115 |
| HinfI | GANTC | 5 cut(s) | 282, 520, 631, 808, 952 |
| HpaII | CCGG | 6 cut(s) | 56, 230, 288, 365, 385, 566 |
| HphI | GGTGA | 4 cut(s) | 433, 515, 637, 824 |
| Hpy166II | GTNNAC | 3 cut(s) | 110, 707, 1049 |
| Hpy188I | TCNGA | 4 cut(s) | 700, 813, 1024, 1130 |
| Hpy188III | TCNNGA | 3 cut(s) | 644, 713, 910 |
| Hpy8I | GTNNAC | 3 cut(s) | 110, 707, 1049 |
| HpyAV | CCTTC | 2 cut(s) | 118, 601 |
| HpyCH4III | ACNGT | 5 cut(s) | 226, 472, 532, 730, 1145 |
| HpyCH4IV | ACGT | 3 cut(s) | 41, 346, 703 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1013 |
| HpyF3I | CTNAG | 4 cut(s) | 66, 645, 697, 879 |
| HpySE526I | ACGT | 3 cut(s) | 41, 346, 703 |
| Hsp92II | CATG | 4 cut(s) | 97, 305, 607, 1088 |
| HspAI | GCGC | 1 cut(s) | 1115 |
| KflI | GGGWCCC | 1 cut(s) | 735 |
| Kzo9I | GATC | 3 cut(s) | 195, 423, 1130 |
| Lsp1109I | GCAGC | 4 cut(s) | 64, 67, 758, 829 |
| LweI | GCATC | 4 cut(s) | 16, 709, 850, 1156 |
| MabI | ACCWGGT | 1 cut(s) | 459 |
| MaeI | CTAG | 5 cut(s) | 165, 440, 821, 827, 1182 |
| MaeII | ACGT | 3 cut(s) | 41, 346, 703 |
| MaeIII | GTNAC | 2 cut(s) | 153, 1118 |
| MalI | GATC | 3 cut(s) | 197, 425, 1132 |
| MboI | GATC | 3 cut(s) | 195, 423, 1130 |
| MboII | GAAGA | 6 cut(s) | 25, 73, 320, 728, 869, 952 |
| MfeI | CAATTG | 1 cut(s) | 684 |
| MluCI | AATT | 6 cut(s) | 16, 275, 378, 638, 684, 890 |
| MlyI | GAGTC | 1 cut(s) | 276 |
| MmeI | TCCRAC | 1 cut(s) | 149 |
| MroXI | GAANNNNTTC | 2 cut(s) | 176, 611 |
| MseI | TTAA | 6 cut(s) | 278, 294, 764, 902, 974, 1089 |
| MslI | CAYNNNNRTG | 5 cut(s) | 317, 608, 803, 837, 1089 |
| MspI | CCGG | 6 cut(s) | 56, 230, 288, 365, 385, 566 |
| MspR9I | CCNGG | 2 cut(s) | 57, 461 |
| MunI | CAATTG | 1 cut(s) | 684 |
| MvaI | CCWGG | 1 cut(s) | 461 |
| MvnI | CGCG | 1 cut(s) | 1117 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1013 |
| NciI | CCSGG | 1 cut(s) | 57 |
| NdeI | CATATG | 1 cut(s) | 885 |
| NdeII | GATC | 3 cut(s) | 195, 423, 1130 |
| NlaIII | CATG | 4 cut(s) | 97, 305, 607, 1088 |
| NlaIV | GGNNCC | 4 cut(s) | 736, 737, 790, 1065 |
| NmuCI | GTSAC | 1 cut(s) | 1118 |
| OliI | CACNNNNGTG | 1 cut(s) | 837 |
| PaqCI | CACCTGC | 1 cut(s) | 1034 |
| PdmI | GAANNNNTTC | 2 cut(s) | 176, 611 |
| PfeI | GAWTC | 4 cut(s) | 520, 631, 808, 952 |
| PflFI | GACNNNGTC | 1 cut(s) | 1124 |
| PinAI | ACCGGT | 1 cut(s) | 364 |
| PkrI | GCNGC | 4 cut(s) | 79, 82, 773, 819 |
| PleI | GAGTC | 1 cut(s) | 276 |
| PpsI | GAGTC | 1 cut(s) | 276 |
| PpuMI | RGGWCCY | 2 cut(s) | 735, 1063 |
| Psp5II | RGGWCCY | 2 cut(s) | 735, 1063 |
| Psp6I | CCWGG | 1 cut(s) | 459 |
| PspEI | GGTNACC | 1 cut(s) | 153 |
| PspGI | CCWGG | 1 cut(s) | 459 |
| PspN4I | GGNNCC | 4 cut(s) | 736, 737, 790, 1065 |
| PspPI | GGNCC | 4 cut(s) | 563, 735, 1049, 1063 |
| PspPPI | RGGWCCY | 2 cut(s) | 735, 1063 |
| PsyI | GACNNNGTC | 1 cut(s) | 1124 |
| RsaI | GTAC | 4 cut(s) | 40, 252, 587, 602 |
| RsaNI | GTAC | 4 cut(s) | 39, 251, 586, 601 |
| RseI | CAYNNNNRTG | 5 cut(s) | 317, 608, 803, 837, 1089 |
| Rsr2I | CGGWCCG | 1 cut(s) | 563 |
| RsrII | CGGWCCG | 1 cut(s) | 563 |
| SaqAI | TTAA | 6 cut(s) | 278, 294, 764, 902, 974, 1089 |
| SatI | GCNGC | 4 cut(s) | 78, 81, 772, 818 |
| Sau3AI | GATC | 3 cut(s) | 195, 423, 1130 |
| Sau96I | GGNCC | 4 cut(s) | 563, 735, 1049, 1063 |
| SchI | GAGTC | 1 cut(s) | 276 |
| ScrFI | CCNGG | 2 cut(s) | 57, 461 |
| SexAI | ACCWGGT | 1 cut(s) | 459 |
| SfaNI | GCATC | 4 cut(s) | 16, 709, 850, 1156 |
| SinI | GGWCC | 4 cut(s) | 563, 735, 1049, 1063 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 317, 608, 803, 837, 1089 |
| SmlI | CTYRAG | 1 cut(s) | 482 |
| SmoI | CTYRAG | 1 cut(s) | 482 |
| Sse9I | AATT | 6 cut(s) | 16, 275, 378, 638, 684, 890 |
| SsiI | CCGC | 2 cut(s) | 561, 1163 |
| SspI | AATATT | 1 cut(s) | 52 |
| SspMI | CTAG | 5 cut(s) | 165, 440, 821, 827, 1182 |
| StyD4I | CCNGG | 2 cut(s) | 55, 459 |
| TaaI | ACNGT | 5 cut(s) | 226, 472, 532, 730, 1145 |
| TaiI | ACGT | 3 cut(s) | 44, 349, 706 |
| TaqI | TCGA | 3 cut(s) | 426, 552, 634 |
| TaqII | GACCGA | 1 cut(s) | 1066 |
| TasI | AATT | 6 cut(s) | 16, 275, 378, 638, 684, 890 |
| TatI | WGTACW | 1 cut(s) | 250 |
| TfiI | GAWTC | 4 cut(s) | 520, 631, 808, 952 |
| Tru1I | TTAA | 6 cut(s) | 278, 294, 764, 902, 974, 1089 |
| Tru9I | TTAA | 6 cut(s) | 278, 294, 764, 902, 974, 1089 |
| TscAI | CASTG | 5 cut(s) | 121, 142, 733, 883, 1150 |
| TseFI | GTSAC | 1 cut(s) | 1118 |
| TseI | GCWGC | 4 cut(s) | 77, 80, 771, 817 |
| Tsp45I | GTSAC | 1 cut(s) | 1118 |
| TspDTI | ATGAA | 4 cut(s) | 198, 231, 620, 907 |
| TspRI | CASTG | 5 cut(s) | 121, 142, 733, 883, 1150 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1124 |
| VpaK11BI | GGWCC | 4 cut(s) | 563, 735, 1049, 1063 |
| XmiI | GTMKAC | 2 cut(s) | 109, 706 |
| XmnI | GAANNNNTTC | 2 cut(s) | 176, 611 |
| XspI | CTAG | 5 cut(s) | 165, 440, 821, 827, 1182 |