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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 438 |
| AatII | GACGTC | 2 cut(s) | 1513, 1538 |
| AccII | CGCG | 1 cut(s) | 1100 |
| AccIII | TCCGGA | 1 cut(s) | 2548 |
| AciI | CCGC | 7 cut(s) | 65, 785, 840, 1100, 1156, 1670, 2420 |
| AclI | AACGTT | 2 cut(s) | 1080, 2354 |
| AclWI | GGATC | 5 cut(s) | 478, 1895, 1924, 2056, 2540 |
| AcsI | RAATTY | 4 cut(s) | 68, 1227, 2214, 2523 |
| AcuI | CTGAAG | 3 cut(s) | 570, 1844, 2196 |
| AcyI | GRCGYC | 2 cut(s) | 1510, 1535 |
| AfaI | GTAC | 6 cut(s) | 112, 659, 890, 1968, 2256, 2471 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 740, 741, 2137, 2377 |
| AflII | CTTAAG | 1 cut(s) | 2315 |
| AflIII | ACRYGT | 3 cut(s) | 231, 660, 939 |
| AjiI | CACGTC | 1 cut(s) | 940 |
| AjnI | CCWGG | 2 cut(s) | 1066, 1116 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1986, 2018 |
| AleI | CACNNNNGTG | 1 cut(s) | 2077 |
| AluBI | AGCT | 6 cut(s) | 967, 1478, 1583, 1652, 1822, 2057 |
| AluI | AGCT | 6 cut(s) | 967, 1478, 1583, 1652, 1822, 2057 |
| Alw26I | GTCTC | 6 cut(s) | 369, 665, 721, 861, 943, 2176 |
| AlwI | GGATC | 5 cut(s) | 478, 1895, 1924, 2056, 2540 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 655, 674 |
| Ama87I | CYCGRG | 1 cut(s) | 1479 |
| Aor13HI | TCCGGA | 1 cut(s) | 2548 |
| AoxI | GGCC | 5 cut(s) | 466, 560, 869, 1287, 2128 |
| ApeKI | GCWGC | 2 cut(s) | 649, 1310 |
| ApoI | RAATTY | 4 cut(s) | 68, 1227, 2214, 2523 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1891, 1923 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 792 |
| AspA2I | CCTAGG | 1 cut(s) | 704 |
| AspS9I | GGNCC | 5 cut(s) | 560, 1288, 1362, 1961, 2128 |
| AsuC2I | CCSGG | 2 cut(s) | 924, 2138 |
| AsuHPI | GGTGA | 5 cut(s) | 47, 1115, 1585, 1913, 2392 |
| AsuII | TTCGAA | 1 cut(s) | 796 |
| AvaI | CYCGRG | 1 cut(s) | 1479 |
| AvaII | GGWCC | 2 cut(s) | 1362, 1961 |
| AvrII | CCTAGG | 1 cut(s) | 704 |
| AxyI | CCTNAGG | 1 cut(s) | 2529 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2303, 2336 |
| BbsI | GAAGAC | 3 cut(s) | 692, 795, 1718 |
| BbvI | GCAGC | 2 cut(s) | 661, 1297 |
| BccI | CCATC | 6 cut(s) | 326, 684, 734, 1125, 1492, 1941 |
| BceAI | ACGGC | 4 cut(s) | 871, 1759, 2134, 2452 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 244, 278, 1551, 1585 |
| BciT130I | CCWGG | 2 cut(s) | 1068, 1118 |
| BciVI | GTATCC | 1 cut(s) | 1635 |
| BcnI | CCSGG | 2 cut(s) | 924, 2138 |
| BcoDI | GTCTC | 6 cut(s) | 369, 665, 721, 861, 943, 2176 |
| BfmI | CTRYAG | 1 cut(s) | 675 |
| BfrI | CTTAAG | 1 cut(s) | 2315 |
| BfuI | GTATCC | 1 cut(s) | 1635 |
| BglII | AGATCT | 1 cut(s) | 450 |
| BisI | GCNGC | 4 cut(s) | 650, 841, 1157, 1311 |
| BlnI | CCTAGG | 1 cut(s) | 704 |
| BlsI | GCNGC | 4 cut(s) | 651, 842, 1158, 1312 |
| Bme1390I | CCNGG | 4 cut(s) | 924, 1068, 1118, 2138 |
| Bme18I | GGWCC | 2 cut(s) | 1362, 1961 |
| BmeT110I | CYCGRG | 1 cut(s) | 1479 |
| BmgBI | CACGTC | 1 cut(s) | 940 |
| BmgT120I | GGNCC | 5 cut(s) | 560, 1288, 1362, 1961, 2128 |
| BmiI | GGNNCC | 1 cut(s) | 1773 |
| BmrFI | CCNGG | 4 cut(s) | 924, 1068, 1118, 2138 |
| BoxI | GACNNNNGTC | 1 cut(s) | 294 |
| BpiI | GAAGAC | 3 cut(s) | 692, 795, 1718 |
| Bpu14I | TTCGAA | 1 cut(s) | 796 |
| BpuEI | CTTGAG | 1 cut(s) | 1614 |
| BpuMI | CCSGG | 2 cut(s) | 924, 2138 |
| BsaHI | GRCGYC | 2 cut(s) | 1510, 1535 |
| BsaJI | CCNNGG | 5 cut(s) | 463, 563, 704, 902, 1117 |
| BsaWI | WCCGGW | 1 cut(s) | 2548 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 740, 741, 2137, 2377 |
| Bse1I | ACTGG | 6 cut(s) | 224, 281, 299, 1364, 1963, 1964 |
| Bse21I | CCTNAGG | 1 cut(s) | 2529 |
| Bse3DI | GCAATG | 2 cut(s) | 562, 2067 |
| BseAI | TCCGGA | 1 cut(s) | 2548 |
| BseBI | CCWGG | 2 cut(s) | 1068, 1118 |
| BseDI | CCNNGG | 5 cut(s) | 463, 563, 704, 902, 1117 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 740, 741, 2137, 2377 |
| BseMI | GCAATG | 2 cut(s) | 562, 2067 |
| BseMII | CTCAG | 3 cut(s) | 417, 750, 2520 |
| BseNI | ACTGG | 6 cut(s) | 224, 281, 299, 1364, 1963, 1964 |
| BseRI | GAGGAG | 1 cut(s) | 695 |
| BseXI | GCAGC | 2 cut(s) | 661, 1297 |
| BsgI | GTGCAG | 1 cut(s) | 1296 |
| Bsh1236I | CGCG | 1 cut(s) | 1100 |
| BshFI | GGCC | 5 cut(s) | 468, 562, 871, 1289, 2130 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1479 |
| BsiSI | CCGG | 4 cut(s) | 923, 2042, 2138, 2549 |
| BslFI | GGGAC | 3 cut(s) | 531, 897, 2316 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 740, 741, 2137, 2377 |
| BsmAI | GTCTC | 6 cut(s) | 369, 665, 721, 861, 943, 2176 |
| BsmFI | GGGAC | 3 cut(s) | 531, 897, 2316 |
| BsmI | GAATGC | 1 cut(s) | 1172 |
| BsnI | GGCC | 5 cut(s) | 468, 562, 871, 1289, 2130 |
| BsoBI | CYCGRG | 1 cut(s) | 1479 |
| Bsp119I | TTCGAA | 1 cut(s) | 796 |
| Bsp13I | TCCGGA | 1 cut(s) | 2548 |
| Bsp1407I | TGTACA | 1 cut(s) | 657 |
| Bsp143I | GATC | 8 cut(s) | 450, 483, 1887, 1911, 1929, 2048, 2536, 2545 |
| BspACI | CCGC | 7 cut(s) | 65, 785, 840, 1100, 1156, 1670, 2420 |
| BspANI | GGCC | 5 cut(s) | 468, 562, 871, 1289, 2130 |
| BspCNI | CTCAG | 3 cut(s) | 418, 749, 2521 |
| BspEI | TCCGGA | 1 cut(s) | 2548 |
| BspFNI | CGCG | 1 cut(s) | 1100 |
| BspHI | TCATGA | 4 cut(s) | 88, 1147, 1699, 1926 |
| BspLI | GGNNCC | 1 cut(s) | 1773 |
| BspMAI | CTGCAG | 1 cut(s) | 679 |
| BspPI | GGATC | 5 cut(s) | 478, 1895, 1924, 2056, 2540 |
| BspT104I | TTCGAA | 1 cut(s) | 796 |
| BspTI | CTTAAG | 1 cut(s) | 2315 |
| BsrDI | GCAATG | 2 cut(s) | 562, 2067 |
| BsrGI | TGTACA | 1 cut(s) | 657 |
| BsrI | ACTGG | 6 cut(s) | 224, 281, 299, 1364, 1963, 1964 |
| BssECI | CCNNGG | 5 cut(s) | 463, 563, 704, 902, 1117 |
| BssMI | GATC | 8 cut(s) | 450, 483, 1887, 1911, 1929, 2048, 2536, 2545 |
| BssNI | GRCGYC | 2 cut(s) | 1510, 1535 |
| BssT1I | CCWWGG | 1 cut(s) | 704 |
| Bst2UI | CCWGG | 2 cut(s) | 1068, 1118 |
| Bst6I | CTCTTC | 4 cut(s) | 180, 1182, 1688, 2331 |
| BstACI | GRCGYC | 2 cut(s) | 1510, 1535 |
| BstAFI | CTTAAG | 1 cut(s) | 2315 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2069 |
| BstAUI | TGTACA | 1 cut(s) | 657 |
| BstBI | TTCGAA | 1 cut(s) | 796 |
| BstC8I | GCNNGC | 3 cut(s) | 257, 509, 1581 |
| BstDEI | CTNAG | 4 cut(s) | 426, 454, 736, 2529 |
| BstDSI | CCRYGG | 1 cut(s) | 902 |
| BstEII | GGTNACC | 1 cut(s) | 1121 |
| BstFNI | CGCG | 1 cut(s) | 1100 |
| BstKTI | GATC | 8 cut(s) | 453, 486, 1890, 1914, 1932, 2051, 2539, 2548 |
| BstMAI | GTCTC | 6 cut(s) | 369, 665, 721, 861, 943, 2176 |
| BstMBI | GATC | 8 cut(s) | 450, 483, 1887, 1911, 1929, 2048, 2536, 2545 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 465, 2069, 2127 |
| BstNI | CCWGG | 2 cut(s) | 1068, 1118 |
| BstNSI | RCATGY | 2 cut(s) | 235, 664 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 294 |
| BstPI | GGTNACC | 1 cut(s) | 1121 |
| BstSCI | CCNGG | 4 cut(s) | 922, 1066, 1116, 2136 |
| BstSFI | CTRYAG | 1 cut(s) | 675 |
| BstUI | CGCG | 1 cut(s) | 1100 |
| BstV1I | GCAGC | 2 cut(s) | 661, 1297 |
| BstV2I | GAAGAC | 3 cut(s) | 692, 795, 1718 |
| BstX2I | RGATCY | 4 cut(s) | 450, 483, 1887, 2545 |
| BstYI | RGATCY | 4 cut(s) | 450, 483, 1887, 2545 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2529 |
| BsuI | GTATCC | 1 cut(s) | 1635 |
| BsuRI | GGCC | 5 cut(s) | 468, 562, 871, 1289, 2130 |
| BtgI | CCRYGG | 1 cut(s) | 902 |
| BtrI | CACGTC | 1 cut(s) | 940 |
| BtsI | GCAGTG | 1 cut(s) | 2462 |
| BtsIMutI | CAGTG | 4 cut(s) | 288, 724, 2263, 2462 |
| Cac8I | GCNNGC | 3 cut(s) | 257, 509, 1581 |
| CaiI | CAGNNNCTG | 2 cut(s) | 655, 674 |
| CciI | TCATGA | 4 cut(s) | 88, 1147, 1699, 1926 |
| Cfr13I | GGNCC | 5 cut(s) | 560, 1288, 1362, 1961, 2128 |
| CseI | GACGC | 3 cut(s) | 641, 773, 1292 |
| Csp6I | GTAC | 6 cut(s) | 111, 658, 889, 1967, 2255, 2470 |
| CviQI | GTAC | 6 cut(s) | 111, 658, 889, 1967, 2255, 2470 |
| DdeI | CTNAG | 4 cut(s) | 426, 454, 736, 2529 |
| DpnI | GATC | 8 cut(s) | 452, 485, 1889, 1913, 1931, 2050, 2538, 2547 |
| DpnII | GATC | 8 cut(s) | 450, 483, 1887, 1911, 1929, 2048, 2536, 2545 |
| Eam1104I | CTCTTC | 4 cut(s) | 180, 1182, 1688, 2331 |
| EarI | CTCTTC | 4 cut(s) | 180, 1182, 1688, 2331 |
| EciI | GGCGGA | 1 cut(s) | 1685 |
| Eco130I | CCWWGG | 1 cut(s) | 704 |
| Eco47I | GGWCC | 2 cut(s) | 1362, 1961 |
| Eco57I | CTGAAG | 3 cut(s) | 570, 1844, 2196 |
| Eco81I | CCTNAGG | 1 cut(s) | 2529 |
| Eco88I | CYCGRG | 1 cut(s) | 1479 |
| Eco91I | GGTNACC | 1 cut(s) | 1121 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2128 |
| EcoO65I | GGTNACC | 1 cut(s) | 1121 |
| EcoRII | CCWGG | 2 cut(s) | 1066, 1116 |
| EcoT14I | CCWWGG | 1 cut(s) | 704 |
| EcoT22I | ATGCAT | 2 cut(s) | 336, 1174 |
| ErhI | CCWWGG | 1 cut(s) | 704 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1487, 1519, 1938, 1970 |
| FaqI | GGGAC | 3 cut(s) | 531, 897, 2316 |
| Fnu4HI | GCNGC | 4 cut(s) | 650, 841, 1157, 1311 |
| Fsp4HI | GCNGC | 4 cut(s) | 650, 841, 1157, 1311 |
| GluI | GCNGC | 4 cut(s) | 650, 841, 1157, 1311 |
| HaeIII | GGCC | 5 cut(s) | 468, 562, 871, 1289, 2130 |
| HapII | CCGG | 4 cut(s) | 923, 2042, 2138, 2549 |
| HgaI | GACGC | 3 cut(s) | 641, 773, 1292 |
| Hin1I | GRCGYC | 2 cut(s) | 1510, 1535 |
| HincII | GTYRAC | 2 cut(s) | 229, 636 |
| HindII | GTYRAC | 2 cut(s) | 229, 636 |
| HinfI | GANTC | 5 cut(s) | 430, 850, 990, 1144, 1696 |
| HpaI | GTTAAC | 1 cut(s) | 636 |
| HpaII | CCGG | 4 cut(s) | 923, 2042, 2138, 2549 |
| HphI | GGTGA | 5 cut(s) | 47, 1115, 1585, 1913, 2392 |
| Hpy166II | GTNNAC | 9 cut(s) | 229, 636, 1050, 1114, 1199, 1365, 1921, 1969, 2462 |
| Hpy8I | GTNNAC | 9 cut(s) | 229, 636, 1050, 1114, 1199, 1365, 1921, 1969, 2462 |
| Hpy99I | CGWCG | 2 cut(s) | 1512, 1537 |
| HpyAV | CCTTC | 3 cut(s) | 132, 607, 2039 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 465, 2069, 2127 |
| HpyF3I | CTNAG | 4 cut(s) | 426, 454, 736, 2529 |
| Hsp92I | GRCGYC | 2 cut(s) | 1510, 1535 |
| Kpn2I | TCCGGA | 1 cut(s) | 2548 |
| KspAI | GTTAAC | 1 cut(s) | 636 |
| Kzo9I | GATC | 8 cut(s) | 450, 483, 1887, 1911, 1929, 2048, 2536, 2545 |
| LmnI | GCTCC | 1 cut(s) | 1771 |
| Lsp1109I | GCAGC | 2 cut(s) | 661, 1297 |
| MalI | GATC | 8 cut(s) | 452, 485, 1889, 1913, 1931, 2050, 2538, 2547 |
| MboI | GATC | 8 cut(s) | 450, 483, 1887, 1911, 1929, 2048, 2536, 2545 |
| MfeI | CAATTG | 3 cut(s) | 192, 1321, 2166 |
| MflI | RGATCY | 4 cut(s) | 450, 483, 1887, 2545 |
| MlyI | GAGTC | 3 cut(s) | 439, 844, 1705 |
| Mph1103I | ATGCAT | 2 cut(s) | 336, 1174 |
| MroI | TCCGGA | 1 cut(s) | 2548 |
| MroXI | GAANNNNTTC | 1 cut(s) | 792 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1761, 2077, 2079 |
| MspCI | CTTAAG | 1 cut(s) | 2315 |
| MspI | CCGG | 4 cut(s) | 923, 2042, 2138, 2549 |
| MspR9I | CCNGG | 4 cut(s) | 924, 1068, 1118, 2138 |
| MunI | CAATTG | 3 cut(s) | 192, 1321, 2166 |
| Mva1269I | GAATGC | 1 cut(s) | 1172 |
| MvaI | CCWGG | 2 cut(s) | 1068, 1118 |
| MvnI | CGCG | 1 cut(s) | 1100 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 465, 2069, 2127 |
| NciI | CCSGG | 2 cut(s) | 924, 2138 |
| NdeII | GATC | 8 cut(s) | 450, 483, 1887, 1911, 1929, 2048, 2536, 2545 |
| NlaIV | GGNNCC | 1 cut(s) | 1773 |
| NmeAIII | GCCGAG | 2 cut(s) | 444, 588 |
| NmuCI | GTSAC | 8 cut(s) | 324, 1094, 1121, 1418, 1511, 2267, 2380, 2483 |
| NsiI | ATGCAT | 2 cut(s) | 336, 1174 |
| NspI | RCATGY | 2 cut(s) | 235, 664 |
| NspV | TTCGAA | 1 cut(s) | 796 |
| OliI | CACNNNNGTG | 1 cut(s) | 2077 |
| PagI | TCATGA | 4 cut(s) | 88, 1147, 1699, 1926 |
| PciI | ACATGT | 2 cut(s) | 231, 660 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2562 |
| PctI | GAATGC | 1 cut(s) | 1172 |
| PdmI | GAANNNNTTC | 1 cut(s) | 792 |
| PfeI | GAWTC | 2 cut(s) | 990, 1144 |
| PflFI | GACNNNGTC | 4 cut(s) | 853, 1534, 1859, 2273 |
| PfoI | TCCNGGA | 1 cut(s) | 922 |
| PkrI | GCNGC | 4 cut(s) | 651, 842, 1158, 1312 |
| PleI | GAGTC | 3 cut(s) | 438, 844, 1704 |
| PpsI | GAGTC | 3 cut(s) | 438, 844, 1704 |
| PscI | ACATGT | 2 cut(s) | 231, 660 |
| PshAI | GACNNNNGTC | 1 cut(s) | 294 |
| PsiI | TTATAA | 1 cut(s) | 438 |
| Psp1406I | AACGTT | 2 cut(s) | 1080, 2354 |
| Psp6I | CCWGG | 2 cut(s) | 1066, 1116 |
| PspEI | GGTNACC | 1 cut(s) | 1121 |
| PspGI | CCWGG | 2 cut(s) | 1066, 1116 |
| PspN4I | GGNNCC | 1 cut(s) | 1773 |
| PspPI | GGNCC | 5 cut(s) | 560, 1288, 1362, 1961, 2128 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1665, 1697 |
| PstI | CTGCAG | 1 cut(s) | 679 |
| PstNI | CAGNNNCTG | 2 cut(s) | 655, 674 |
| PsuI | RGATCY | 4 cut(s) | 450, 483, 1887, 2545 |
| PsyI | GACNNNGTC | 4 cut(s) | 853, 1534, 1859, 2273 |
| RsaI | GTAC | 6 cut(s) | 112, 659, 890, 1968, 2256, 2471 |
| RsaNI | GTAC | 6 cut(s) | 111, 658, 889, 1967, 2255, 2470 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1761, 2077, 2079 |
| SatI | GCNGC | 4 cut(s) | 650, 841, 1157, 1311 |
| Sau3AI | GATC | 8 cut(s) | 450, 483, 1887, 1911, 1929, 2048, 2536, 2545 |
| Sau96I | GGNCC | 5 cut(s) | 560, 1288, 1362, 1961, 2128 |
| SchI | GAGTC | 3 cut(s) | 439, 844, 1705 |
| ScrFI | CCNGG | 4 cut(s) | 924, 1068, 1118, 2138 |
| SfcI | CTRYAG | 1 cut(s) | 675 |
| SfuI | TTCGAA | 1 cut(s) | 796 |
| SinI | GGWCC | 2 cut(s) | 1362, 1961 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1761, 2077, 2079 |
| SmlI | CTYRAG | 2 cut(s) | 1629, 2315 |
| SmoI | CTYRAG | 2 cut(s) | 1629, 2315 |
| SsiI | CCGC | 7 cut(s) | 65, 785, 840, 1100, 1156, 1670, 2420 |
| StyD4I | CCNGG | 4 cut(s) | 922, 1066, 1116, 2136 |
| StyI | CCWWGG | 1 cut(s) | 704 |
| TaqI | TCGA | 9 cut(s) | 73, 264, 796, 1176, 1443, 1654, 1910, 2133, 2451 |
| TatI | WGTACW | 2 cut(s) | 657, 1966 |
| TauI | GCSGC | 2 cut(s) | 843, 1159 |
| TfiI | GAWTC | 2 cut(s) | 990, 1144 |
| TscAI | CASTG | 4 cut(s) | 288, 724, 2270, 2469 |
| TseFI | GTSAC | 8 cut(s) | 324, 1094, 1121, 1418, 1511, 2267, 2380, 2483 |
| TseI | GCWGC | 2 cut(s) | 649, 1310 |
| Tsp45I | GTSAC | 8 cut(s) | 324, 1094, 1121, 1418, 1511, 2267, 2380, 2483 |
| TspGWI | ACGGA | 2 cut(s) | 41, 534 |
| TspRI | CASTG | 4 cut(s) | 288, 724, 2270, 2469 |
| Tth111I | GACNNNGTC | 4 cut(s) | 853, 1534, 1859, 2273 |
| Vha464I | CTTAAG | 1 cut(s) | 2315 |
| VpaK11BI | GGWCC | 2 cut(s) | 1362, 1961 |
| XapI | RAATTY | 4 cut(s) | 68, 1227, 2214, 2523 |
| XbaI | TCTAGA | 2 cut(s) | 934, 2539 |
| XceI | RCATGY | 2 cut(s) | 235, 664 |
| XmaJI | CCTAGG | 1 cut(s) | 704 |
| XmnI | GAANNNNTTC | 1 cut(s) | 792 |
| ZraI | GACGTC | 2 cut(s) | 1511, 1536 |
| Zsp2I | ATGCAT | 2 cut(s) | 336, 1174 |