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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1220 |
| AciI | CCGC | 1 cut(s) | 1451 |
| AclWI | GGATC | 2 cut(s) | 860, 1358 |
| AcoI | YGGCCR | 1 cut(s) | 1040 |
| AcsI | RAATTY | 1 cut(s) | 989 |
| AcuI | CTGAAG | 2 cut(s) | 660, 690 |
| AdeI | CACNNNGTG | 2 cut(s) | 785, 1158 |
| AfaI | GTAC | 5 cut(s) | 564, 581, 958, 1120, 1440 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 591, 1457 |
| AflIII | ACRYGT | 3 cut(s) | 680, 911, 1609 |
| AgeI | ACCGGT | 1 cut(s) | 1295 |
| AgsI | TTSAA | 9 cut(s) | 50, 118, 222, 479, 728, 920, 941, 1145, 1407 |
| AjiI | CACGTC | 1 cut(s) | 914 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 534, 566 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 838, 870 |
| AluBI | AGCT | 5 cut(s) | 335, 545, 713, 977, 1519 |
| AluI | AGCT | 5 cut(s) | 335, 545, 713, 977, 1519 |
| Alw21I | GWGCWC | 1 cut(s) | 1450 |
| Alw26I | GTCTC | 3 cut(s) | 310, 940, 1207 |
| AlwI | GGATC | 2 cut(s) | 860, 1358 |
| AoxI | GGCC | 2 cut(s) | 556, 1040 |
| ApeKI | GCWGC | 5 cut(s) | 203, 710, 1345, 1662, 1665 |
| ApoI | RAATTY | 1 cut(s) | 989 |
| AsiGI | ACCGGT | 1 cut(s) | 1295 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 933 |
| AspS9I | GGNCC | 5 cut(s) | 359, 557, 604, 1258, 1293 |
| AsuHPI | GGTGA | 5 cut(s) | 509, 521, 797, 1007, 1033 |
| AsuII | TTCGAA | 1 cut(s) | 588 |
| AvaII | GGWCC | 4 cut(s) | 359, 604, 1258, 1293 |
| Bbv12I | GWGCWC | 1 cut(s) | 1450 |
| BbvI | GCAGC | 5 cut(s) | 215, 722, 1357, 1649, 1652 |
| BccI | CCATC | 6 cut(s) | 136, 269, 405, 963, 1186, 1307 |
| BciVI | GTATCC | 1 cut(s) | 689 |
| BcoDI | GTCTC | 3 cut(s) | 310, 940, 1207 |
| BfaI | CTAG | 6 cut(s) | 732, 767, 821, 1002, 1238, 1520 |
| BfmI | CTRYAG | 1 cut(s) | 432 |
| BfuI | GTATCC | 1 cut(s) | 689 |
| BisI | GCNGC | 5 cut(s) | 204, 711, 1346, 1663, 1666 |
| BlsI | GCNGC | 5 cut(s) | 205, 712, 1347, 1664, 1667 |
| BmcAI | AGTACT | 1 cut(s) | 958 |
| Bme18I | GGWCC | 4 cut(s) | 359, 604, 1258, 1293 |
| BmgBI | CACGTC | 1 cut(s) | 914 |
| BmgT120I | GGNCC | 5 cut(s) | 359, 557, 604, 1258, 1293 |
| BmiI | GGNNCC | 3 cut(s) | 181, 1260, 1294 |
| BmsI | GCATC | 5 cut(s) | 30, 78, 190, 635, 1357 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1245 |
| Bpu14I | TTCGAA | 1 cut(s) | 588 |
| BpuEI | CTTGAG | 1 cut(s) | 1659 |
| Bsa29I | ATCGAT | 3 cut(s) | 628, 835, 1090 |
| BsaAI | YACGTR | 2 cut(s) | 214, 1610 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1362 |
| BsaJI | CCNNGG | 1 cut(s) | 869 |
| BsaWI | WCCGGW | 1 cut(s) | 1295 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 591, 1457 |
| Bse118I | RCCGGY | 1 cut(s) | 1295 |
| Bse1I | ACTGG | 1 cut(s) | 1502 |
| Bse3DI | GCAATG | 2 cut(s) | 648, 745 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1362 |
| BseCI | ATCGAT | 3 cut(s) | 628, 835, 1090 |
| BseDI | CCNNGG | 1 cut(s) | 869 |
| BseGI | GGATG | 4 cut(s) | 582, 650, 974, 1543 |
| BseJI | GATNNNNATC | 1 cut(s) | 1362 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 591, 1457 |
| BseMI | GCAATG | 2 cut(s) | 648, 745 |
| BseMII | CTCAG | 2 cut(s) | 1092, 1456 |
| BseNI | ACTGG | 1 cut(s) | 1502 |
| BseXI | GCAGC | 5 cut(s) | 215, 722, 1357, 1649, 1652 |
| BshFI | GGCC | 2 cut(s) | 558, 1042 |
| BshTI | ACCGGT | 1 cut(s) | 1295 |
| BshVI | ATCGAT | 3 cut(s) | 628, 835, 1090 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1450 |
| BsiSI | CCGG | 1 cut(s) | 1296 |
| BslFI | GGGAC | 2 cut(s) | 1244, 1306 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 591, 1457 |
| BsmAI | GTCTC | 3 cut(s) | 310, 940, 1207 |
| BsmFI | GGGAC | 2 cut(s) | 1244, 1306 |
| BsnI | GGCC | 2 cut(s) | 558, 1042 |
| Bsp119I | TTCGAA | 1 cut(s) | 588 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1450 |
| Bsp1407I | TGTACA | 1 cut(s) | 562 |
| Bsp143I | GATC | 4 cut(s) | 324, 629, 865, 1363 |
| Bsp19I | CCATGG | 1 cut(s) | 869 |
| BspACI | CCGC | 1 cut(s) | 1451 |
| BspANI | GGCC | 2 cut(s) | 558, 1042 |
| BspCNI | CTCAG | 2 cut(s) | 1093, 1455 |
| BspDI | ATCGAT | 3 cut(s) | 628, 835, 1090 |
| BspLI | GGNNCC | 3 cut(s) | 181, 1260, 1294 |
| BspPI | GGATC | 2 cut(s) | 860, 1358 |
| BspT104I | TTCGAA | 1 cut(s) | 588 |
| BsrDI | GCAATG | 2 cut(s) | 648, 745 |
| BsrFI | RCCGGY | 1 cut(s) | 1295 |
| BsrGI | TGTACA | 1 cut(s) | 562 |
| BsrI | ACTGG | 1 cut(s) | 1502 |
| BssAI | RCCGGY | 1 cut(s) | 1295 |
| BssECI | CCNNGG | 1 cut(s) | 869 |
| BssMI | GATC | 4 cut(s) | 324, 629, 865, 1363 |
| BssT1I | CCWWGG | 1 cut(s) | 869 |
| Bst4CI | ACNGT | 2 cut(s) | 1021, 1109 |
| Bst6I | CTCTTC | 1 cut(s) | 666 |
| BstAUI | TGTACA | 1 cut(s) | 562 |
| BstBAI | YACGTR | 2 cut(s) | 214, 1610 |
| BstBI | TTCGAA | 1 cut(s) | 588 |
| BstC8I | GCNNGC | 1 cut(s) | 1636 |
| BstDEI | CTNAG | 3 cut(s) | 953, 1101, 1442 |
| BstDSI | CCRYGG | 1 cut(s) | 869 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 589 |
| BstF5I | GGATG | 4 cut(s) | 582, 650, 974, 1543 |
| BstKTI | GATC | 4 cut(s) | 327, 632, 868, 1366 |
| BstMAI | GTCTC | 3 cut(s) | 310, 940, 1207 |
| BstMBI | GATC | 4 cut(s) | 324, 629, 865, 1363 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 75, 542, 1385 |
| BstNSI | RCATGY | 3 cut(s) | 385, 1436, 1501 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1245 |
| BstSFI | CTRYAG | 1 cut(s) | 432 |
| BstV1I | GCAGC | 5 cut(s) | 215, 722, 1357, 1649, 1652 |
| BstX2I | RGATCY | 1 cut(s) | 1363 |
| BstYI | RGATCY | 1 cut(s) | 1363 |
| Bsu15I | ATCGAT | 3 cut(s) | 628, 835, 1090 |
| BsuI | GTATCC | 1 cut(s) | 689 |
| BsuRI | GGCC | 2 cut(s) | 558, 1042 |
| BsuTUI | ATCGAT | 3 cut(s) | 628, 835, 1090 |
| BtgI | CCRYGG | 1 cut(s) | 869 |
| BtrI | CACGTC | 1 cut(s) | 914 |
| BtsCI | GGATG | 4 cut(s) | 582, 650, 974, 1543 |
| BtsIMutI | CAGTG | 1 cut(s) | 1114 |
| Cac8I | GCNNGC | 1 cut(s) | 1636 |
| Cfr10I | RCCGGY | 1 cut(s) | 1295 |
| Cfr13I | GGNCC | 5 cut(s) | 359, 557, 604, 1258, 1293 |
| ClaI | ATCGAT | 3 cut(s) | 628, 835, 1090 |
| CseI | GACGC | 1 cut(s) | 744 |
| Csp6I | GTAC | 5 cut(s) | 563, 580, 957, 1119, 1439 |
| CspAI | ACCGGT | 1 cut(s) | 1295 |
| CviAII | CATG | 8 cut(s) | 91, 328, 382, 755, 817, 870, 1433, 1498 |
| CviQI | GTAC | 5 cut(s) | 563, 580, 957, 1119, 1439 |
| DdeI | CTNAG | 3 cut(s) | 953, 1101, 1442 |
| DpnI | GATC | 4 cut(s) | 326, 631, 867, 1365 |
| DpnII | GATC | 4 cut(s) | 324, 629, 865, 1363 |
| DraI | TTTAAA | 2 cut(s) | 135, 339 |
| DraIII | CACNNNGTG | 2 cut(s) | 785, 1158 |
| EaeI | YGGCCR | 1 cut(s) | 1040 |
| Eam1104I | CTCTTC | 1 cut(s) | 666 |
| EarI | CTCTTC | 1 cut(s) | 666 |
| Eco130I | CCWWGG | 1 cut(s) | 869 |
| Eco47I | GGWCC | 4 cut(s) | 359, 604, 1258, 1293 |
| Eco57I | CTGAAG | 2 cut(s) | 660, 690 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 589 |
| EcoO109I | RGGNCCY | 2 cut(s) | 604, 1258 |
| EcoT14I | CCWWGG | 1 cut(s) | 869 |
| EcoT22I | ATGCAT | 1 cut(s) | 650 |
| ErhI | CCWWGG | 1 cut(s) | 869 |
| FaeI | CATG | 8 cut(s) | 94, 331, 385, 758, 820, 873, 1436, 1501 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 98, 130 |
| FaqI | GGGAC | 2 cut(s) | 1244, 1306 |
| FatI | CATG | 8 cut(s) | 90, 327, 381, 754, 816, 869, 1432, 1497 |
| Fnu4HI | GCNGC | 5 cut(s) | 204, 711, 1346, 1663, 1666 |
| FokI | GGATG | 4 cut(s) | 589, 657, 981, 1550 |
| Fsp4HI | GCNGC | 5 cut(s) | 204, 711, 1346, 1663, 1666 |
| FspBI | CTAG | 6 cut(s) | 732, 767, 821, 1002, 1238, 1520 |
| GluI | GCNGC | 5 cut(s) | 204, 711, 1346, 1663, 1666 |
| HaeIII | GGCC | 2 cut(s) | 558, 1042 |
| HapII | CCGG | 1 cut(s) | 1296 |
| HgaI | GACGC | 1 cut(s) | 744 |
| Hin1II | CATG | 8 cut(s) | 94, 331, 385, 758, 820, 873, 1436, 1501 |
| HinfI | GANTC | 3 cut(s) | 526, 998, 1200 |
| HpaII | CCGG | 1 cut(s) | 1296 |
| HphI | GGTGA | 5 cut(s) | 509, 521, 797, 1007, 1033 |
| Hpy166II | GTNNAC | 5 cut(s) | 517, 846, 1121, 1330, 1653 |
| Hpy188I | TCNGA | 6 cut(s) | 126, 411, 859, 1015, 1098, 1445 |
| Hpy188III | TCNNGA | 5 cut(s) | 443, 917, 938, 1002, 1407 |
| Hpy8I | GTNNAC | 5 cut(s) | 517, 846, 1121, 1330, 1653 |
| HpyAV | CCTTC | 8 cut(s) | 88, 220, 595, 595, 635, 764, 944, 1680 |
| HpyCH4III | ACNGT | 2 cut(s) | 1021, 1109 |
| HpyCH4IV | ACGT | 6 cut(s) | 213, 682, 913, 1530, 1609, 1658 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 75, 542, 1385 |
| HpyF3I | CTNAG | 3 cut(s) | 953, 1101, 1442 |
| HpySE526I | ACGT | 6 cut(s) | 213, 682, 913, 1530, 1609, 1658 |
| Hsp92II | CATG | 8 cut(s) | 94, 331, 385, 758, 820, 873, 1436, 1501 |
| Kzo9I | GATC | 4 cut(s) | 324, 629, 865, 1363 |
| LmnI | GCTCC | 1 cut(s) | 707 |
| Lsp1109I | GCAGC | 5 cut(s) | 215, 722, 1357, 1649, 1652 |
| LweI | GCATC | 5 cut(s) | 30, 78, 190, 635, 1357 |
| MaeI | CTAG | 6 cut(s) | 732, 767, 821, 1002, 1238, 1520 |
| MaeII | ACGT | 6 cut(s) | 213, 682, 913, 1530, 1609, 1658 |
| MaeIII | GTNAC | 1 cut(s) | 1415 |
| MalI | GATC | 4 cut(s) | 326, 631, 867, 1365 |
| MboI | GATC | 4 cut(s) | 324, 629, 865, 1363 |
| MflI | RGATCY | 1 cut(s) | 1363 |
| MhlI | GDGCHC | 1 cut(s) | 1450 |
| MlyI | GAGTC | 1 cut(s) | 1209 |
| MmeI | TCCRAC | 2 cut(s) | 104, 554 |
| MnlI | CCTC | 9 cut(s) | 243, 501, 505, 736, 781, 1096, 1451, 1528, 1558 |
| Mph1103I | ATGCAT | 1 cut(s) | 650 |
| MroXI | GAANNNNTTC | 1 cut(s) | 933 |
| MseI | TTAA | 6 cut(s) | 134, 150, 263, 338, 702, 987 |
| MspA1I | CMGCKG | 1 cut(s) | 713 |
| MspI | CCGG | 1 cut(s) | 1296 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 75, 542, 1385 |
| NcoI | CCATGG | 1 cut(s) | 869 |
| NdeII | GATC | 4 cut(s) | 324, 629, 865, 1363 |
| NlaIII | CATG | 8 cut(s) | 94, 331, 385, 758, 820, 873, 1436, 1501 |
| NlaIV | GGNNCC | 3 cut(s) | 181, 1260, 1294 |
| NmuCI | GTSAC | 1 cut(s) | 1415 |
| NsiI | ATGCAT | 1 cut(s) | 650 |
| NspI | RCATGY | 3 cut(s) | 385, 1436, 1501 |
| NspV | TTCGAA | 1 cut(s) | 588 |
| PdmI | GAANNNNTTC | 1 cut(s) | 933 |
| PfeI | GAWTC | 2 cut(s) | 526, 998 |
| PinAI | ACCGGT | 1 cut(s) | 1295 |
| PkrI | GCNGC | 5 cut(s) | 205, 712, 1347, 1664, 1667 |
| PleI | GAGTC | 1 cut(s) | 1208 |
| PpsI | GAGTC | 1 cut(s) | 1208 |
| Ppu21I | YACGTR | 2 cut(s) | 214, 1610 |
| PpuMI | RGGWCCY | 2 cut(s) | 604, 1258 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1245 |
| PsiI | TTATAA | 1 cut(s) | 1220 |
| Psp5II | RGGWCCY | 2 cut(s) | 604, 1258 |
| PspN4I | GGNNCC | 3 cut(s) | 181, 1260, 1294 |
| PspPI | GGNCC | 5 cut(s) | 359, 557, 604, 1258, 1293 |
| PspPPI | RGGWCCY | 2 cut(s) | 604, 1258 |
| PsuI | RGATCY | 1 cut(s) | 1363 |
| PvuII | CAGCTG | 1 cut(s) | 713 |
| RsaI | GTAC | 5 cut(s) | 564, 581, 958, 1120, 1440 |
| RsaNI | GTAC | 5 cut(s) | 563, 580, 957, 1119, 1439 |
| SaqAI | TTAA | 6 cut(s) | 134, 150, 263, 338, 702, 987 |
| SatI | GCNGC | 5 cut(s) | 204, 711, 1346, 1663, 1666 |
| Sau3AI | GATC | 4 cut(s) | 324, 629, 865, 1363 |
| Sau96I | GGNCC | 5 cut(s) | 359, 557, 604, 1258, 1293 |
| ScaI | AGTACT | 1 cut(s) | 958 |
| SchI | GAGTC | 1 cut(s) | 1209 |
| SduI | GDGCHC | 1 cut(s) | 1450 |
| SfaNI | GCATC | 5 cut(s) | 30, 78, 190, 635, 1357 |
| SfcI | CTRYAG | 1 cut(s) | 432 |
| SfuI | TTCGAA | 1 cut(s) | 588 |
| SinI | GGWCC | 4 cut(s) | 359, 604, 1258, 1293 |
| SmlI | CTYRAG | 1 cut(s) | 1674 |
| SmoI | CTYRAG | 1 cut(s) | 1674 |
| SsiI | CCGC | 1 cut(s) | 1451 |
| SspMI | CTAG | 6 cut(s) | 732, 767, 821, 1002, 1238, 1520 |
| StyI | CCWWGG | 1 cut(s) | 869 |
| TaaI | ACNGT | 2 cut(s) | 1021, 1109 |
| TaiI | ACGT | 6 cut(s) | 216, 685, 916, 1533, 1612, 1661 |
| TaqI | TCGA | 6 cut(s) | 588, 628, 835, 1090, 1162, 1424 |
| TatI | WGTACW | 4 cut(s) | 562, 956, 1118, 1438 |
| TfiI | GAWTC | 2 cut(s) | 526, 998 |
| Tru1I | TTAA | 6 cut(s) | 134, 150, 263, 338, 702, 987 |
| Tru9I | TTAA | 6 cut(s) | 134, 150, 263, 338, 702, 987 |
| TscAI | CASTG | 1 cut(s) | 1114 |
| TseFI | GTSAC | 1 cut(s) | 1415 |
| TseI | GCWGC | 5 cut(s) | 203, 710, 1345, 1662, 1665 |
| Tsp45I | GTSAC | 1 cut(s) | 1415 |
| TspDTI | ATGAA | 8 cut(s) | 107, 462, 614, 771, 942, 1063, 1500, 1554 |
| TspRI | CASTG | 1 cut(s) | 1114 |
| VpaK11BI | GGWCC | 4 cut(s) | 359, 604, 1258, 1293 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 589 |
| XapI | RAATTY | 1 cut(s) | 989 |
| XbaI | TCTAGA | 1 cut(s) | 1001 |
| XceI | RCATGY | 3 cut(s) | 385, 1436, 1501 |
| XmnI | GAANNNNTTC | 1 cut(s) | 933 |
| XspI | CTAG | 6 cut(s) | 732, 767, 821, 1002, 1238, 1520 |
| ZrmI | AGTACT | 1 cut(s) | 958 |
| Zsp2I | ATGCAT | 1 cut(s) | 650 |