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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 718 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 863 |
| AclWI | GGATC | 1 cut(s) | 745 |
| AcoI | YGGCCR | 1 cut(s) | 854 |
| AcsI | RAATTY | 1 cut(s) | 62 |
| AdeI | CACNNNGTG | 1 cut(s) | 572 |
| AfaI | GTAC | 3 cut(s) | 409, 740, 1007 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 290, 668, 831, 863 |
| AflII | CTTAAG | 1 cut(s) | 68 |
| AflIII | ACRYGT | 1 cut(s) | 492 |
| AgsI | TTSAA | 8 cut(s) | 59, 124, 244, 427, 448, 763, 1093, 1114 |
| AjnI | CCWGG | 2 cut(s) | 400, 538 |
| AluBI | AGCT | 4 cut(s) | 198, 458, 657, 893 |
| AluI | AGCT | 4 cut(s) | 198, 458, 657, 893 |
| AlwI | GGATC | 1 cut(s) | 745 |
| Ama87I | CYCGRG | 1 cut(s) | 722 |
| AoxI | GGCC | 2 cut(s) | 854, 950 |
| ApeKI | GCWGC | 6 cut(s) | 111, 248, 517, 637, 657, 1072 |
| ApoI | RAATTY | 1 cut(s) | 62 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 597 |
| AspA2I | CCTAGG | 1 cut(s) | 875 |
| AspS9I | GGNCC | 3 cut(s) | 147, 166, 1034 |
| AsuC2I | CCSGG | 3 cut(s) | 723, 724, 1047 |
| AsuHPI | GGTGA | 1 cut(s) | 683 |
| AvaI | CYCGRG | 1 cut(s) | 722 |
| AvaII | GGWCC | 3 cut(s) | 147, 166, 1034 |
| AvrII | CCTAGG | 1 cut(s) | 875 |
| BaeGI | GKGCMC | 1 cut(s) | 723 |
| BalI | TGGCCA | 1 cut(s) | 856 |
| BanI | GGYRCC | 1 cut(s) | 718 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 989, 1021 |
| BbsI | GAAGAC | 1 cut(s) | 354 |
| BbvI | GCAGC | 6 cut(s) | 98, 235, 504, 644, 649, 1084 |
| BccI | CCATC | 5 cut(s) | 235, 374, 577, 899, 1099 |
| BceAI | ACGGC | 1 cut(s) | 1060 |
| BciT130I | CCWGG | 2 cut(s) | 402, 540 |
| BcnI | CCSGG | 3 cut(s) | 723, 724, 1047 |
| BfaI | CTAG | 3 cut(s) | 252, 876, 890 |
| BfmI | CTRYAG | 2 cut(s) | 199, 1070 |
| BfrI | CTTAAG | 1 cut(s) | 68 |
| BisI | GCNGC | 6 cut(s) | 112, 249, 518, 638, 658, 1073 |
| BlnI | CCTAGG | 1 cut(s) | 875 |
| BlsI | GCNGC | 6 cut(s) | 113, 250, 519, 639, 659, 1074 |
| Bme1390I | CCNGG | 5 cut(s) | 402, 540, 723, 724, 1047 |
| Bme18I | GGWCC | 3 cut(s) | 147, 166, 1034 |
| BmeT110I | CYCGRG | 1 cut(s) | 722 |
| BmgT120I | GGNCC | 3 cut(s) | 147, 166, 1034 |
| BmiI | GGNNCC | 2 cut(s) | 720, 881 |
| BmrFI | CCNGG | 5 cut(s) | 402, 540, 723, 724, 1047 |
| BmrI | ACTGGG | 1 cut(s) | 698 |
| BmsI | GCATC | 4 cut(s) | 466, 630, 637, 1116 |
| BmuI | ACTGGG | 1 cut(s) | 698 |
| BpiI | GAAGAC | 1 cut(s) | 354 |
| BpuMI | CCSGG | 3 cut(s) | 723, 724, 1047 |
| BsaAI | YACGTR | 1 cut(s) | 969 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1065 |
| BsaJI | CCNNGG | 5 cut(s) | 539, 722, 755, 875, 983 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 290, 668, 831, 863 |
| Bse1I | ACTGG | 1 cut(s) | 693 |
| Bse3DI | GCAATG | 1 cut(s) | 212 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1065 |
| BseBI | CCWGG | 2 cut(s) | 402, 540 |
| BseDI | CCNNGG | 5 cut(s) | 539, 722, 755, 875, 983 |
| BseGI | GGATG | 9 cut(s) | 21, 310, 337, 385, 588, 774, 812, 910, 1110 |
| BseJI | GATNNNNATC | 1 cut(s) | 1065 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 290, 668, 831, 863 |
| BseMI | GCAATG | 1 cut(s) | 212 |
| BseNI | ACTGG | 1 cut(s) | 693 |
| BseSI | GKGCMC | 1 cut(s) | 723 |
| BseXI | GCAGC | 6 cut(s) | 98, 235, 504, 644, 649, 1084 |
| BshFI | GGCC | 2 cut(s) | 856, 952 |
| BshNI | GGYRCC | 1 cut(s) | 718 |
| BsiHKCI | CYCGRG | 1 cut(s) | 722 |
| BsiSI | CCGG | 2 cut(s) | 723, 1047 |
| BslFI | GGGAC | 1 cut(s) | 107 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 290, 668, 831, 863 |
| BsmFI | GGGAC | 1 cut(s) | 107 |
| BsmI | GAATGC | 1 cut(s) | 250 |
| BsnI | GGCC | 2 cut(s) | 856, 952 |
| BsoBI | CYCGRG | 1 cut(s) | 722 |
| Bsp1286I | GDGCHC | 1 cut(s) | 723 |
| Bsp143I | GATC | 2 cut(s) | 32, 750 |
| Bsp19I | CCATGG | 1 cut(s) | 983 |
| BspANI | GGCC | 2 cut(s) | 856, 952 |
| BspLI | GGNNCC | 2 cut(s) | 720, 881 |
| BspMAI | CTGCAG | 1 cut(s) | 1074 |
| BspPI | GGATC | 1 cut(s) | 745 |
| BspT107I | GGYRCC | 1 cut(s) | 718 |
| BspTI | CTTAAG | 1 cut(s) | 68 |
| BsrDI | GCAATG | 1 cut(s) | 212 |
| BsrI | ACTGG | 1 cut(s) | 693 |
| BssECI | CCNNGG | 5 cut(s) | 539, 722, 755, 875, 983 |
| BssMI | GATC | 2 cut(s) | 32, 750 |
| BssT1I | CCWWGG | 3 cut(s) | 755, 875, 983 |
| Bst2UI | CCWGG | 2 cut(s) | 402, 540 |
| Bst4CI | ACNGT | 3 cut(s) | 271, 784, 923 |
| Bst6I | CTCTTC | 2 cut(s) | 294, 992 |
| BstAFI | CTTAAG | 1 cut(s) | 68 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 111 |
| BstBAI | YACGTR | 1 cut(s) | 969 |
| BstC8I | GCNNGC | 3 cut(s) | 481, 642, 950 |
| BstDEI | CTNAG | 2 cut(s) | 884, 929 |
| BstDSI | CCRYGG | 1 cut(s) | 983 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 288 |
| BstF5I | GGATG | 9 cut(s) | 21, 310, 337, 385, 588, 774, 812, 910, 1110 |
| BstKTI | GATC | 2 cut(s) | 35, 753 |
| BstMBI | GATC | 2 cut(s) | 32, 750 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 111, 117, 126, 245 |
| BstNI | CCWGG | 2 cut(s) | 402, 540 |
| BstNSI | RCATGY | 2 cut(s) | 496, 644 |
| BstSCI | CCNGG | 5 cut(s) | 400, 538, 721, 722, 1045 |
| BstSFI | CTRYAG | 2 cut(s) | 199, 1070 |
| BstSLI | GKGCMC | 1 cut(s) | 723 |
| BstV1I | GCAGC | 6 cut(s) | 98, 235, 504, 644, 649, 1084 |
| BstV2I | GAAGAC | 1 cut(s) | 354 |
| BsuRI | GGCC | 2 cut(s) | 856, 952 |
| BtgI | CCRYGG | 1 cut(s) | 983 |
| BtsCI | GGATG | 9 cut(s) | 21, 310, 337, 385, 588, 774, 812, 910, 1110 |
| BtsI | GCAGTG | 1 cut(s) | 331 |
| BtsIMutI | CAGTG | 1 cut(s) | 331 |
| Cac8I | GCNNGC | 3 cut(s) | 481, 642, 950 |
| Cfr13I | GGNCC | 3 cut(s) | 147, 166, 1034 |
| Cfr9I | CCCGGG | 1 cut(s) | 722 |
| Csp6I | GTAC | 3 cut(s) | 408, 739, 1006 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 194, 229 |
| CviQI | GTAC | 3 cut(s) | 408, 739, 1006 |
| DdeI | CTNAG | 2 cut(s) | 884, 929 |
| DpnI | GATC | 2 cut(s) | 34, 752 |
| DpnII | GATC | 2 cut(s) | 32, 750 |
| DraIII | CACNNNGTG | 1 cut(s) | 572 |
| EaeI | YGGCCR | 1 cut(s) | 854 |
| Eam1104I | CTCTTC | 2 cut(s) | 294, 992 |
| EarI | CTCTTC | 2 cut(s) | 294, 992 |
| Eco130I | CCWWGG | 3 cut(s) | 755, 875, 983 |
| Eco47I | GGWCC | 3 cut(s) | 147, 166, 1034 |
| Eco88I | CYCGRG | 1 cut(s) | 722 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 288 |
| EcoRI | GAATTC | 1 cut(s) | 62 |
| EcoRII | CCWGG | 2 cut(s) | 400, 538 |
| EcoT14I | CCWWGG | 3 cut(s) | 755, 875, 983 |
| ErhI | CCWWGG | 3 cut(s) | 755, 875, 983 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 51, 83 |
| FaqI | GGGAC | 1 cut(s) | 107 |
| FauNDI | CATATG | 1 cut(s) | 107 |
| Fnu4HI | GCNGC | 6 cut(s) | 112, 249, 518, 638, 658, 1073 |
| FokI | GGATG | 9 cut(s) | 28, 317, 344, 392, 595, 781, 799, 917, 1117 |
| Fsp4HI | GCNGC | 6 cut(s) | 112, 249, 518, 638, 658, 1073 |
| FspBI | CTAG | 3 cut(s) | 252, 876, 890 |
| GluI | GCNGC | 6 cut(s) | 112, 249, 518, 638, 658, 1073 |
| HaeIII | GGCC | 2 cut(s) | 856, 952 |
| HapII | CCGG | 2 cut(s) | 723, 1047 |
| HincII | GTYRAC | 2 cut(s) | 274, 1017 |
| HindII | GTYRAC | 2 cut(s) | 274, 1017 |
| HinfI | GANTC | 6 cut(s) | 260, 280, 350, 598, 674, 821 |
| HpaII | CCGG | 2 cut(s) | 723, 1047 |
| HphI | GGTGA | 1 cut(s) | 683 |
| Hpy166II | GTNNAC | 2 cut(s) | 274, 1017 |
| Hpy188I | TCNGA | 5 cut(s) | 48, 265, 453, 490, 904 |
| Hpy188III | TCNNGA | 2 cut(s) | 284, 1032 |
| Hpy8I | GTNNAC | 2 cut(s) | 274, 1017 |
| HpyAV | CCTTC | 4 cut(s) | 305, 518, 721, 986 |
| HpyCH4III | ACNGT | 3 cut(s) | 271, 784, 923 |
| HpyCH4IV | ACGT | 2 cut(s) | 968, 1019 |
| HpyCH4V | TGCA | 6 cut(s) | 77, 575, 621, 637, 993, 1072 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 111, 117, 126, 245 |
| HpyF3I | CTNAG | 2 cut(s) | 884, 929 |
| HpySE526I | ACGT | 2 cut(s) | 968, 1019 |
| Kzo9I | GATC | 2 cut(s) | 32, 750 |
| Lsp1109I | GCAGC | 6 cut(s) | 98, 235, 504, 644, 649, 1084 |
| LweI | GCATC | 4 cut(s) | 466, 630, 637, 1116 |
| MaeI | CTAG | 3 cut(s) | 252, 876, 890 |
| MaeII | ACGT | 2 cut(s) | 968, 1019 |
| MaeIII | GTNAC | 1 cut(s) | 534 |
| MalI | GATC | 2 cut(s) | 34, 752 |
| MboI | GATC | 2 cut(s) | 32, 750 |
| MboII | GAAGA | 6 cut(s) | 35, 71, 311, 320, 359, 1009 |
| MhlI | GDGCHC | 1 cut(s) | 723 |
| MlsI | TGGCCA | 1 cut(s) | 856 |
| MluCI | AATT | 4 cut(s) | 62, 339, 498, 1026 |
| MluNI | TGGCCA | 1 cut(s) | 856 |
| MlyI | GAGTC | 1 cut(s) | 344 |
| Mox20I | TGGCCA | 1 cut(s) | 856 |
| MroXI | GAANNNNTTC | 1 cut(s) | 597 |
| MscI | TGGCCA | 1 cut(s) | 856 |
| MseI | TTAA | 6 cut(s) | 69, 132, 180, 497, 912, 1025 |
| MslI | CAYNNNNRTG | 2 cut(s) | 645, 988 |
| Msp20I | TGGCCA | 1 cut(s) | 856 |
| MspA1I | CMGCKG | 1 cut(s) | 657 |
| MspCI | CTTAAG | 1 cut(s) | 68 |
| MspI | CCGG | 2 cut(s) | 723, 1047 |
| MspR9I | CCNGG | 5 cut(s) | 402, 540, 723, 724, 1047 |
| Mva1269I | GAATGC | 1 cut(s) | 250 |
| MvaI | CCWGG | 2 cut(s) | 402, 540 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 111, 117, 126, 245 |
| NciI | CCSGG | 3 cut(s) | 723, 724, 1047 |
| NcoI | CCATGG | 1 cut(s) | 983 |
| NdeI | CATATG | 1 cut(s) | 107 |
| NdeII | GATC | 2 cut(s) | 32, 750 |
| NlaIV | GGNNCC | 2 cut(s) | 720, 881 |
| NspI | RCATGY | 2 cut(s) | 496, 644 |
| PaeI | GCATGC | 1 cut(s) | 644 |
| PciI | ACATGT | 1 cut(s) | 492 |
| PctI | GAATGC | 1 cut(s) | 250 |
| PdmI | GAANNNNTTC | 1 cut(s) | 597 |
| PfeI | GAWTC | 5 cut(s) | 260, 280, 598, 674, 821 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 863 |
| PkrI | GCNGC | 6 cut(s) | 113, 250, 519, 639, 659, 1074 |
| PleI | GAGTC | 1 cut(s) | 344 |
| PpsI | GAGTC | 1 cut(s) | 344 |
| Ppu21I | YACGTR | 1 cut(s) | 969 |
| PscI | ACATGT | 1 cut(s) | 492 |
| Psp6I | CCWGG | 2 cut(s) | 400, 538 |
| PspGI | CCWGG | 2 cut(s) | 400, 538 |
| PspN4I | GGNNCC | 2 cut(s) | 720, 881 |
| PspPI | GGNCC | 3 cut(s) | 147, 166, 1034 |
| PstI | CTGCAG | 1 cut(s) | 1074 |
| PvuII | CAGCTG | 1 cut(s) | 657 |
| RsaI | GTAC | 3 cut(s) | 409, 740, 1007 |
| RsaNI | GTAC | 3 cut(s) | 408, 739, 1006 |
| RseI | CAYNNNNRTG | 2 cut(s) | 645, 988 |
| SaqAI | TTAA | 6 cut(s) | 69, 132, 180, 497, 912, 1025 |
| SatI | GCNGC | 6 cut(s) | 112, 249, 518, 638, 658, 1073 |
| Sau3AI | GATC | 2 cut(s) | 32, 750 |
| Sau96I | GGNCC | 3 cut(s) | 147, 166, 1034 |
| SchI | GAGTC | 1 cut(s) | 344 |
| ScrFI | CCNGG | 5 cut(s) | 402, 540, 723, 724, 1047 |
| SduI | GDGCHC | 1 cut(s) | 723 |
| SfaNI | GCATC | 4 cut(s) | 466, 630, 637, 1116 |
| SfcI | CTRYAG | 2 cut(s) | 199, 1070 |
| SinI | GGWCC | 3 cut(s) | 147, 166, 1034 |
| SmaI | CCCGGG | 1 cut(s) | 724 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 645, 988 |
| SmlI | CTYRAG | 1 cut(s) | 68 |
| SmoI | CTYRAG | 1 cut(s) | 68 |
| SphI | GCATGC | 1 cut(s) | 644 |
| Sse9I | AATT | 4 cut(s) | 62, 339, 498, 1026 |
| SspI | AATATT | 1 cut(s) | 941 |
| SspMI | CTAG | 3 cut(s) | 252, 876, 890 |
| StyD4I | CCNGG | 5 cut(s) | 400, 538, 721, 722, 1045 |
| StyI | CCWWGG | 3 cut(s) | 755, 875, 983 |
| TaaI | ACNGT | 3 cut(s) | 271, 784, 923 |
| TaiI | ACGT | 2 cut(s) | 971, 1022 |
| TaqI | TCGA | 1 cut(s) | 353 |
| TasI | AATT | 4 cut(s) | 62, 339, 498, 1026 |
| TatI | WGTACW | 1 cut(s) | 1005 |
| TfiI | GAWTC | 5 cut(s) | 260, 280, 598, 674, 821 |
| Tru1I | TTAA | 6 cut(s) | 69, 132, 180, 497, 912, 1025 |
| Tru9I | TTAA | 6 cut(s) | 69, 132, 180, 497, 912, 1025 |
| TscAI | CASTG | 1 cut(s) | 331 |
| TseI | GCWGC | 6 cut(s) | 111, 248, 517, 637, 657, 1072 |
| TspDTI | ATGAA | 9 cut(s) | 32, 293, 321, 380, 590, 606, 888, 933, 1010 |
| TspMI | CCCGGG | 1 cut(s) | 722 |
| TspRI | CASTG | 1 cut(s) | 331 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 863 |
| Vha464I | CTTAAG | 1 cut(s) | 68 |
| VpaK11BI | GGWCC | 3 cut(s) | 147, 166, 1034 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 288 |
| XapI | RAATTY | 1 cut(s) | 62 |
| XceI | RCATGY | 2 cut(s) | 496, 644 |
| XmaI | CCCGGG | 1 cut(s) | 722 |
| XmaJI | CCTAGG | 1 cut(s) | 875 |
| XmnI | GAANNNNTTC | 1 cut(s) | 597 |
| XspI | CTAG | 3 cut(s) | 252, 876, 890 |