Domain of unknown function (DUF4216)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transpos_assoc | PF13963 | 3 - 76 | 1.8e-16 | Transposase-associated domain |
| Transposase_21 | PF02992 | 290 - 500 | 5.5e-98 | Transposase family tnp2 |
| DUF4218 | PF13960 | 700 - 762 | 1e-23 | Domain of unknown function (DUF4218) |
| DUF4216 | PF13952 | 956 - 1008 | 6.4e-12 | Domain of unknown function (DUF4216) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 405, 1044, 2006 |
| AbsI | CCTCGAGG | 1 cut(s) | 1110 |
| AccB1I | GGYRCC | 2 cut(s) | 74, 882 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 332, 3148 |
| AccI | GTMKAC | 2 cut(s) | 2793, 3006 |
| AccII | CGCG | 1 cut(s) | 971 |
| AccIII | TCCGGA | 1 cut(s) | 37 |
| AclWI | GGATC | 6 cut(s) | 1455, 2633, 2775, 2907, 2993, 3006 |
| AcoI | YGGCCR | 2 cut(s) | 1022, 1737 |
| AcsI | RAATTY | 4 cut(s) | 742, 932, 2451, 3161 |
| AcuI | CTGAAG | 3 cut(s) | 512, 582, 3087 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 37, 243, 332, 869, 935, 1242, 1268, 3148 |
| AflIII | ACRYGT | 2 cut(s) | 813, 2611 |
| AgeI | ACCGGT | 1 cut(s) | 2254 |
| AjnI | CCWGG | 3 cut(s) | 91, 439, 1102 |
| Alw21I | GWGCWC | 3 cut(s) | 701, 1634, 1918 |
| Alw26I | GTCTC | 4 cut(s) | 763, 1599, 2318, 3082 |
| AlwI | GGATC | 6 cut(s) | 1455, 2633, 2775, 2907, 2993, 3006 |
| Ama87I | CYCGRG | 2 cut(s) | 1110, 2559 |
| Aor13HI | TCCGGA | 1 cut(s) | 37 |
| AoxI | GGCC | 5 cut(s) | 468, 619, 1022, 1115, 1737 |
| ApaI | GGGCCC | 1 cut(s) | 1119 |
| ApeKI | GCWGC | 6 cut(s) | 163, 322, 1232, 1424, 2240, 3232 |
| ApoI | RAATTY | 4 cut(s) | 742, 932, 2451, 3161 |
| AsiGI | ACCGGT | 1 cut(s) | 2254 |
| AsuC2I | CCSGG | 1 cut(s) | 1119 |
| AsuHPI | GGTGA | 3 cut(s) | 1852, 2109, 2867 |
| AsuII | TTCGAA | 1 cut(s) | 1411 |
| AvaI | CYCGRG | 2 cut(s) | 1110, 2559 |
| AvaII | GGWCC | 7 cut(s) | 377, 1106, 1245, 2209, 2252, 2678, 2840 |
| AxyI | CCTNAGG | 2 cut(s) | 387, 864 |
| BaeGI | GKGCMC | 2 cut(s) | 79, 1119 |
| BalI | TGGCCA | 2 cut(s) | 1024, 1739 |
| BamHI | GGATCC | 1 cut(s) | 2998 |
| BanI | GGYRCC | 2 cut(s) | 74, 882 |
| BanII | GRGCYC | 2 cut(s) | 969, 1119 |
| BauI | CACGAG | 2 cut(s) | 1773, 1864 |
| Bbv12I | GWGCWC | 3 cut(s) | 701, 1634, 1918 |
| BbvI | GCAGC | 6 cut(s) | 175, 334, 1219, 1436, 2227, 3244 |
| BceAI | ACGGC | 3 cut(s) | 15, 455, 933 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1391, 1425, 2450, 2484 |
| BciT130I | CCWGG | 3 cut(s) | 93, 441, 1104 |
| BciVI | GTATCC | 1 cut(s) | 2286 |
| BclI | TGATCA | 1 cut(s) | 1993 |
| BcnI | CCSGG | 1 cut(s) | 1119 |
| BcoDI | GTCTC | 4 cut(s) | 763, 1599, 2318, 3082 |
| BfaI | CTAG | 9 cut(s) | 207, 747, 795, 1682, 2441, 2682, 2697, 2757, 3171 |
| BfuI | GTATCC | 1 cut(s) | 2286 |
| BglII | AGATCT | 2 cut(s) | 1780, 3130 |
| BisI | GCNGC | 6 cut(s) | 164, 323, 1233, 1425, 2241, 3233 |
| BlsI | GCNGC | 6 cut(s) | 165, 324, 1234, 1426, 2242, 3234 |
| BmcAI | AGTACT | 1 cut(s) | 3302 |
| Bme1390I | CCNGG | 4 cut(s) | 93, 441, 1104, 1119 |
| Bme18I | GGWCC | 7 cut(s) | 377, 1106, 1245, 2209, 2252, 2678, 2840 |
| BmeT110I | CYCGRG | 2 cut(s) | 1110, 2559 |
| BmiI | GGNNCC | 6 cut(s) | 76, 378, 884, 1117, 2841, 3000 |
| BmrFI | CCNGG | 4 cut(s) | 93, 441, 1104, 1119 |
| BmsI | GCATC | 5 cut(s) | 175, 409, 631, 1728, 3219 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 994, 1026 |
| Bpu10I | CCTNAGC | 2 cut(s) | 765, 961 |
| Bpu14I | TTCGAA | 1 cut(s) | 1411 |
| BpuMI | CCSGG | 1 cut(s) | 1119 |
| Bsa29I | ATCGAT | 1 cut(s) | 1131 |
| BsaAI | YACGTR | 1 cut(s) | 1913 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2772, 3255 |
| BsaJI | CCNNGG | 3 cut(s) | 91, 439, 1055 |
| BsaWI | WCCGGW | 2 cut(s) | 37, 2254 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 327, 357, 509, 539 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 37, 243, 332, 869, 935, 1242, 1268, 3148 |
| Bse118I | RCCGGY | 1 cut(s) | 2254 |
| Bse1I | ACTGG | 6 cut(s) | 755, 1025, 1477, 2120, 3002, 3202 |
| Bse21I | CCTNAGG | 2 cut(s) | 387, 864 |
| Bse3DI | GCAATG | 2 cut(s) | 1487, 2497 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2772, 3255 |
| BseAI | TCCGGA | 1 cut(s) | 37 |
| BseBI | CCWGG | 3 cut(s) | 93, 441, 1104 |
| BseCI | ATCGAT | 1 cut(s) | 1131 |
| BseDI | CCNNGG | 3 cut(s) | 91, 439, 1055 |
| BseJI | GATNNNNATC | 2 cut(s) | 2772, 3255 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 37, 243, 332, 869, 935, 1242, 1268, 3148 |
| BseMI | GCAATG | 2 cut(s) | 1487, 2497 |
| BseMII | CTCAG | 5 cut(s) | 378, 716, 729, 2838, 3258 |
| BseNI | ACTGG | 6 cut(s) | 755, 1025, 1477, 2120, 3002, 3202 |
| BseRI | GAGGAG | 1 cut(s) | 288 |
| BseSI | GKGCMC | 2 cut(s) | 79, 1119 |
| BseXI | GCAGC | 6 cut(s) | 175, 334, 1219, 1436, 2227, 3244 |
| BsgI | GTGCAG | 3 cut(s) | 341, 1797, 1836 |
| Bsh1236I | CGCG | 1 cut(s) | 971 |
| BshFI | GGCC | 5 cut(s) | 470, 621, 1024, 1117, 1739 |
| BshNI | GGYRCC | 2 cut(s) | 74, 882 |
| BshTI | ACCGGT | 1 cut(s) | 2254 |
| BshVI | ATCGAT | 1 cut(s) | 1131 |
| BsiHKAI | GWGCWC | 3 cut(s) | 701, 1634, 1918 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1110, 2559 |
| BsiSI | CCGG | 3 cut(s) | 38, 1119, 2255 |
| BslFI | GGGAC | 6 cut(s) | 390, 633, 1389, 1741, 2421, 3202 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 37, 243, 332, 869, 935, 1242, 1268, 3148 |
| BsmAI | GTCTC | 4 cut(s) | 763, 1599, 2318, 3082 |
| BsmFI | GGGAC | 6 cut(s) | 390, 633, 1389, 1741, 2421, 3202 |
| BsmI | GAATGC | 2 cut(s) | 1482, 2501 |
| BsnI | GGCC | 5 cut(s) | 470, 621, 1024, 1117, 1739 |
| BsoBI | CYCGRG | 2 cut(s) | 1110, 2559 |
| Bsp119I | TTCGAA | 1 cut(s) | 1411 |
| Bsp120I | GGGCCC | 1 cut(s) | 1115 |
| Bsp1286I | GDGCHC | 6 cut(s) | 79, 701, 969, 1119, 1634, 1918 |
| Bsp13I | TCCGGA | 1 cut(s) | 37 |
| Bsp1407I | TGTACA | 1 cut(s) | 116 |
| Bsp19I | CCATGG | 1 cut(s) | 1055 |
| Bsp68I | TCGCGA | 1 cut(s) | 971 |
| BspANI | GGCC | 5 cut(s) | 470, 621, 1024, 1117, 1739 |
| BspCNI | CTCAG | 5 cut(s) | 379, 715, 730, 2839, 3259 |
| BspDI | ATCGAT | 1 cut(s) | 1131 |
| BspEI | TCCGGA | 1 cut(s) | 37 |
| BspFNI | CGCG | 1 cut(s) | 971 |
| BspHI | TCATGA | 1 cut(s) | 876 |
| BspLI | GGNNCC | 6 cut(s) | 76, 378, 884, 1117, 2841, 3000 |
| BspPI | GGATC | 6 cut(s) | 1455, 2633, 2775, 2907, 2993, 3006 |
| BspT104I | TTCGAA | 1 cut(s) | 1411 |
| BspT107I | GGYRCC | 2 cut(s) | 74, 882 |
| BsrDI | GCAATG | 2 cut(s) | 1487, 2497 |
| BsrFI | RCCGGY | 1 cut(s) | 2254 |
| BsrGI | TGTACA | 1 cut(s) | 116 |
| BsrI | ACTGG | 6 cut(s) | 755, 1025, 1477, 2120, 3002, 3202 |
| BssAI | RCCGGY | 1 cut(s) | 2254 |
| BssECI | CCNNGG | 3 cut(s) | 91, 439, 1055 |
| BssSI | CACGAG | 2 cut(s) | 1773, 1864 |
| BssT1I | CCWWGG | 1 cut(s) | 1055 |
| Bst2BI | CACGAG | 2 cut(s) | 1773, 1864 |
| Bst2UI | CCWGG | 3 cut(s) | 93, 441, 1104 |
| Bst4CI | ACNGT | 7 cut(s) | 157, 1319, 1467, 1650, 2016, 2476, 2692 |
| Bst6I | CTCTTC | 2 cut(s) | 2138, 2229 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2017, 2496 |
| BstAUI | TGTACA | 1 cut(s) | 116 |
| BstBAI | YACGTR | 1 cut(s) | 1913 |
| BstBI | TTCGAA | 1 cut(s) | 1411 |
| BstC8I | GCNNGC | 4 cut(s) | 293, 849, 969, 2022 |
| BstDSI | CCRYGG | 1 cut(s) | 1055 |
| BstFNI | CGCG | 1 cut(s) | 971 |
| BstMAI | GTCTC | 4 cut(s) | 763, 1599, 2318, 3082 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 2017, 2246, 2496, 2972, 2981 |
| BstNI | CCWGG | 3 cut(s) | 93, 441, 1104 |
| BstNSI | RCATGY | 6 cut(s) | 295, 817, 851, 1311, 3023, 3107 |
| BstSCI | CCNGG | 4 cut(s) | 91, 439, 1102, 1117 |
| BstSLI | GKGCMC | 2 cut(s) | 79, 1119 |
| BstUI | CGCG | 1 cut(s) | 971 |
| BstV1I | GCAGC | 6 cut(s) | 175, 334, 1219, 1436, 2227, 3244 |
| BstX2I | RGATCY | 3 cut(s) | 1780, 2998, 3130 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 535 |
| BstYI | RGATCY | 3 cut(s) | 1780, 2998, 3130 |
| Bsu15I | ATCGAT | 1 cut(s) | 1131 |
| Bsu36I | CCTNAGG | 2 cut(s) | 387, 864 |
| BsuI | GTATCC | 1 cut(s) | 2286 |
| BsuRI | GGCC | 5 cut(s) | 470, 621, 1024, 1117, 1739 |
| BsuTUI | ATCGAT | 1 cut(s) | 1131 |
| BtgI | CCRYGG | 1 cut(s) | 1055 |
| BtgZI | GCGATG | 1 cut(s) | 1364 |
| BtsI | GCAGTG | 1 cut(s) | 1091 |
| BtsIMutI | CAGTG | 3 cut(s) | 710, 1091, 1315 |
| BtuMI | TCGCGA | 1 cut(s) | 971 |
| Cac8I | GCNNGC | 4 cut(s) | 293, 849, 969, 2022 |
| CciI | TCATGA | 1 cut(s) | 876 |
| Cfr10I | RCCGGY | 1 cut(s) | 2254 |
| ClaI | ATCGAT | 1 cut(s) | 1131 |
| CseI | GACGC | 1 cut(s) | 2340 |
| CspAI | ACCGGT | 1 cut(s) | 2254 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2044, 2079 |
| EaeI | YGGCCR | 2 cut(s) | 1022, 1737 |
| Eam1104I | CTCTTC | 2 cut(s) | 2138, 2229 |
| EarI | CTCTTC | 2 cut(s) | 2138, 2229 |
| Eco130I | CCWWGG | 1 cut(s) | 1055 |
| Eco24I | GRGCYC | 2 cut(s) | 969, 1119 |
| Eco32I | GATATC | 2 cut(s) | 1129, 2649 |
| Eco47I | GGWCC | 7 cut(s) | 377, 1106, 1245, 2209, 2252, 2678, 2840 |
| Eco57I | CTGAAG | 3 cut(s) | 512, 582, 3087 |
| Eco81I | CCTNAGG | 2 cut(s) | 387, 864 |
| Eco88I | CYCGRG | 2 cut(s) | 1110, 2559 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1106, 1115, 2840 |
| EcoRI | GAATTC | 1 cut(s) | 742 |
| EcoRII | CCWGG | 3 cut(s) | 91, 439, 1102 |
| EcoRV | GATATC | 2 cut(s) | 1129, 2649 |
| EcoT14I | CCWWGG | 1 cut(s) | 1055 |
| EcoT38I | GRGCYC | 2 cut(s) | 969, 1119 |
| ErhI | CCWWGG | 1 cut(s) | 1055 |
| FaqI | GGGAC | 6 cut(s) | 390, 633, 1389, 1741, 2421, 3202 |
| FbaI | TGATCA | 1 cut(s) | 1993 |
| FblI | GTMKAC | 2 cut(s) | 2793, 3006 |
| Fnu4HI | GCNGC | 6 cut(s) | 164, 323, 1233, 1425, 2241, 3233 |
| FriOI | GRGCYC | 2 cut(s) | 969, 1119 |
| Fsp4HI | GCNGC | 6 cut(s) | 164, 323, 1233, 1425, 2241, 3233 |
| FspBI | CTAG | 9 cut(s) | 207, 747, 795, 1682, 2441, 2682, 2697, 2757, 3171 |
| GluI | GCNGC | 6 cut(s) | 164, 323, 1233, 1425, 2241, 3233 |
| HaeIII | GGCC | 5 cut(s) | 470, 621, 1024, 1117, 1739 |
| HapII | CCGG | 3 cut(s) | 38, 1119, 2255 |
| HgaI | GACGC | 1 cut(s) | 2340 |
| HincII | GTYRAC | 2 cut(s) | 1470, 2794 |
| HindII | GTYRAC | 2 cut(s) | 1470, 2794 |
| HindIII | AAGCTT | 2 cut(s) | 139, 2982 |
| HpaII | CCGG | 3 cut(s) | 38, 1119, 2255 |
| HphI | GGTGA | 3 cut(s) | 1852, 2109, 2867 |
| Hpy166II | GTNNAC | 6 cut(s) | 436, 1221, 1470, 2794, 3007, 3199 |
| Hpy188I | TCNGA | 7 cut(s) | 729, 739, 892, 943, 1530, 2093, 2653 |
| Hpy8I | GTNNAC | 6 cut(s) | 436, 1221, 1470, 2794, 3007, 3199 |
| Hpy99I | CGWCG | 3 cut(s) | 2334, 2472, 2550 |
| HpyAV | CCTTC | 9 cut(s) | 208, 557, 1159, 1222, 1288, 1820, 2199, 2336, 2652 |
| HpyCH4III | ACNGT | 7 cut(s) | 157, 1319, 1467, 1650, 2016, 2476, 2692 |
| HpyCH4IV | ACGT | 5 cut(s) | 1534, 1912, 2035, 2548, 2611 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 2017, 2246, 2496, 2972, 2981 |
| HpySE526I | ACGT | 5 cut(s) | 1534, 1912, 2035, 2548, 2611 |
| Kpn2I | TCCGGA | 1 cut(s) | 37 |
| Ksp22I | TGATCA | 1 cut(s) | 1993 |
| LmnI | GCTCC | 5 cut(s) | 217, 275, 1921, 2458, 2569 |
| Lsp1109I | GCAGC | 6 cut(s) | 175, 334, 1219, 1436, 2227, 3244 |
| LweI | GCATC | 5 cut(s) | 175, 409, 631, 1728, 3219 |
| MaeI | CTAG | 9 cut(s) | 207, 747, 795, 1682, 2441, 2682, 2697, 2757, 3171 |
| MaeII | ACGT | 5 cut(s) | 1534, 1912, 2035, 2548, 2611 |
| MaeIII | GTNAC | 5 cut(s) | 86, 512, 1355, 2692, 3031 |
| MfeI | CAATTG | 2 cut(s) | 330, 2025 |
| MflI | RGATCY | 3 cut(s) | 1780, 2998, 3130 |
| MhlI | GDGCHC | 6 cut(s) | 79, 701, 969, 1119, 1634, 1918 |
| MlsI | TGGCCA | 2 cut(s) | 1024, 1739 |
| MluNI | TGGCCA | 2 cut(s) | 1024, 1739 |
| MlyI | GAGTC | 5 cut(s) | 236, 1328, 1363, 2320, 3184 |
| MmeI | TCCRAC | 4 cut(s) | 444, 2109, 2547, 2618 |
| Mox20I | TGGCCA | 2 cut(s) | 1024, 1739 |
| MroI | TCCGGA | 1 cut(s) | 37 |
| MscI | TGGCCA | 2 cut(s) | 1024, 1739 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1060, 2946 |
| Msp20I | TGGCCA | 2 cut(s) | 1024, 1739 |
| MspI | CCGG | 3 cut(s) | 38, 1119, 2255 |
| MspR9I | CCNGG | 4 cut(s) | 93, 441, 1104, 1119 |
| MunI | CAATTG | 2 cut(s) | 330, 2025 |
| Mva1269I | GAATGC | 2 cut(s) | 1482, 2501 |
| MvaI | CCWGG | 3 cut(s) | 93, 441, 1104 |
| MvnI | CGCG | 1 cut(s) | 971 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 2017, 2246, 2496, 2972, 2981 |
| NciI | CCSGG | 1 cut(s) | 1119 |
| NcoI | CCATGG | 1 cut(s) | 1055 |
| NlaIV | GGNNCC | 6 cut(s) | 76, 378, 884, 1117, 2841, 3000 |
| NmeAIII | GCCGAG | 2 cut(s) | 740, 1619 |
| NmuCI | GTSAC | 3 cut(s) | 512, 1355, 2692 |
| NruI | TCGCGA | 1 cut(s) | 971 |
| NspI | RCATGY | 6 cut(s) | 295, 817, 851, 1311, 3023, 3107 |
| NspV | TTCGAA | 1 cut(s) | 1411 |
| PaeI | GCATGC | 2 cut(s) | 295, 851 |
| PaeR7I | CTCGAG | 2 cut(s) | 1110, 2559 |
| PagI | TCATGA | 1 cut(s) | 876 |
| PciI | ACATGT | 1 cut(s) | 813 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2335, 2776 |
| PctI | GAATGC | 2 cut(s) | 1482, 2501 |
| PfeI | GAWTC | 7 cut(s) | 581, 734, 873, 893, 1273, 1764, 2357 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 332, 3148 |
| PfoI | TCCNGGA | 1 cut(s) | 1102 |
| PinAI | ACCGGT | 1 cut(s) | 2254 |
| PkrI | GCNGC | 6 cut(s) | 165, 324, 1234, 1426, 2242, 3234 |
| PleI | GAGTC | 5 cut(s) | 235, 1328, 1362, 2320, 3184 |
| PpsI | GAGTC | 5 cut(s) | 235, 1328, 1362, 2320, 3184 |
| Ppu21I | YACGTR | 1 cut(s) | 1913 |
| PpuMI | RGGWCCY | 2 cut(s) | 1106, 2840 |
| PscI | ACATGT | 1 cut(s) | 813 |
| PsiI | TTATAA | 3 cut(s) | 405, 1044, 2006 |
| Psp5II | RGGWCCY | 2 cut(s) | 1106, 2840 |
| Psp6I | CCWGG | 3 cut(s) | 91, 439, 1102 |
| PspGI | CCWGG | 3 cut(s) | 91, 439, 1102 |
| PspN4I | GGNNCC | 6 cut(s) | 76, 378, 884, 1117, 2841, 3000 |
| PspOMI | GGGCCC | 1 cut(s) | 1115 |
| PspPPI | RGGWCCY | 2 cut(s) | 1106, 2840 |
| PspXI | VCTCGAGB | 1 cut(s) | 1110 |
| PsuI | RGATCY | 3 cut(s) | 1780, 2998, 3130 |
| RruI | TCGCGA | 1 cut(s) | 971 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1060, 2946 |
| SalI | GTCGAC | 1 cut(s) | 2792 |
| SatI | GCNGC | 6 cut(s) | 164, 323, 1233, 1425, 2241, 3233 |
| ScaI | AGTACT | 1 cut(s) | 3302 |
| SchI | GAGTC | 5 cut(s) | 236, 1328, 1363, 2320, 3184 |
| ScrFI | CCNGG | 4 cut(s) | 93, 441, 1104, 1119 |
| SduI | GDGCHC | 6 cut(s) | 79, 701, 969, 1119, 1634, 1918 |
| SfaNI | GCATC | 5 cut(s) | 175, 409, 631, 1728, 3219 |
| Sfr274I | CTCGAG | 2 cut(s) | 1110, 2559 |
| SfuI | TTCGAA | 1 cut(s) | 1411 |
| SinI | GGWCC | 7 cut(s) | 377, 1106, 1245, 2209, 2252, 2678, 2840 |
| SlaI | CTCGAG | 2 cut(s) | 1110, 2559 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1060, 2946 |
| SmlI | CTYRAG | 2 cut(s) | 1110, 2559 |
| SmoI | CTYRAG | 2 cut(s) | 1110, 2559 |
| SphI | GCATGC | 2 cut(s) | 295, 851 |
| SspI | AATATT | 1 cut(s) | 1612 |
| SspMI | CTAG | 9 cut(s) | 207, 747, 795, 1682, 2441, 2682, 2697, 2757, 3171 |
| StyD4I | CCNGG | 4 cut(s) | 91, 439, 1102, 1117 |
| StyI | CCWWGG | 1 cut(s) | 1055 |
| TaaI | ACNGT | 7 cut(s) | 157, 1319, 1467, 1650, 2016, 2476, 2692 |
| TaiI | ACGT | 5 cut(s) | 1537, 1915, 2038, 2551, 2614 |
| TatI | WGTACW | 5 cut(s) | 116, 1004, 1030, 2102, 3300 |
| TfiI | GAWTC | 7 cut(s) | 581, 734, 873, 893, 1273, 1764, 2357 |
| TscAI | CASTG | 3 cut(s) | 710, 1098, 1322 |
| TseFI | GTSAC | 3 cut(s) | 512, 1355, 2692 |
| TseI | GCWGC | 6 cut(s) | 163, 322, 1232, 1424, 2240, 3232 |
| Tsp45I | GTSAC | 3 cut(s) | 512, 1355, 2692 |
| TspRI | CASTG | 3 cut(s) | 710, 1098, 1322 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 332, 3148 |
| VpaK11BI | GGWCC | 7 cut(s) | 377, 1106, 1245, 2209, 2252, 2678, 2840 |
| XapI | RAATTY | 4 cut(s) | 742, 932, 2451, 3161 |
| XceI | RCATGY | 6 cut(s) | 295, 817, 851, 1311, 3023, 3107 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2563, 2717 |
| XhoI | CTCGAG | 2 cut(s) | 1110, 2559 |
| XmiI | GTMKAC | 2 cut(s) | 2793, 3006 |
| XspI | CTAG | 9 cut(s) | 207, 747, 795, 1682, 2441, 2682, 2697, 2757, 3171 |
| ZrmI | AGTACT | 1 cut(s) | 3302 |